Wall clock time and date at job start Tue Mar 31 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86803 * 119.99850 * 2 1 4 4 H 1.48498 * 109.47063 * 270.00190 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00067 * 3 2 1 6 6 H 1.48502 * 109.47340 * 150.00046 * 3 2 1 7 7 C 1.39897 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00109 * 175.60401 * 7 2 1 9 9 C 1.41144 * 120.00103 * 355.60485 * 7 2 1 10 10 C 1.40891 * 120.16300 * 214.74942 * 9 7 2 11 11 C 1.36371 * 119.85324 * 179.76288 * 10 9 7 12 12 C 1.39471 * 120.17748 * 0.53695 * 11 10 9 13 13 N 1.39268 * 119.83962 * 179.71675 * 12 11 10 14 14 C 1.34780 * 120.00024 * 34.71751 * 13 12 11 15 15 O 1.21281 * 119.99784 * 355.74897 * 14 13 12 16 16 C 1.50693 * 120.00197 * 175.75161 * 14 13 12 17 17 H 1.09009 * 110.54077 * 61.15923 * 16 14 13 18 18 C 1.54806 * 110.48953 * 183.77639 * 16 14 13 19 19 C 1.54997 * 102.08980 * 139.56018 * 18 16 14 20 20 O 1.44382 * 103.49026 * 322.97378 * 19 18 16 21 21 C 1.43739 * 106.97409 * 40.06749 * 20 19 18 22 22 C 1.39580 * 120.32086 * 359.43793 * 12 11 10 23 23 Cl 1.73595 * 119.92787 * 180.27754 * 22 12 11 24 24 C 1.36477 * 120.14646 * 0.29809 * 22 12 11 25 25 H 0.97003 * 120.00366 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.07250 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.91711 * 180.24746 * 11 10 9 28 28 H 0.96995 * 119.99740 * 214.71396 * 13 12 11 29 29 H 1.09000 * 110.90845 * 257.75397 * 18 16 14 30 30 H 1.09001 * 110.90647 * 21.32713 * 18 16 14 31 31 H 1.09000 * 110.62378 * 81.47946 * 19 18 16 32 32 H 1.09010 * 110.61733 * 204.47580 * 19 18 16 33 33 H 1.09001 * 109.87874 * 214.06372 * 21 20 19 34 34 H 1.08994 * 109.88370 * 92.90506 * 21 20 19 35 35 H 1.08003 * 120.09043 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0465 -1.4001 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4403 0.7000 7 6 2.0082 -1.2115 -0.0005 8 1 3.0859 -1.2128 -0.0722 9 6 1.3057 -2.4321 0.0926 10 6 1.8650 -3.5192 0.7930 11 6 1.1786 -4.6941 0.8832 12 6 -0.0694 -4.8254 0.2746 13 7 -0.7617 -6.0304 0.3662 14 6 -0.6744 -6.7743 1.4867 15 8 0.0665 -6.4337 2.3844 16 6 -1.4975 -8.0291 1.6241 17 1 -1.2356 -8.7454 0.8453 18 6 -1.2998 -8.6560 3.0256 19 6 -2.7384 -9.1072 3.3853 20 8 -3.5668 -8.0586 2.8385 21 6 -3.0012 -7.6967 1.5676 22 6 -0.6307 -3.7531 -0.4207 23 17 -2.1880 -3.9255 -1.1681 24 6 0.0424 -2.5696 -0.5146 25 1 -0.4851 0.8400 0.0004 26 1 2.8333 -3.4208 1.2611 27 1 1.6046 -5.5267 1.4232 28 1 -1.3066 -6.3342 -0.3765 29 1 -0.6248 -9.5105 2.9778 30 1 -0.9353 -7.9139 3.7358 31 1 -2.9696 -10.0633 2.9158 32 1 -2.8621 -9.1695 4.4666 33 1 -3.1386 -6.6299 1.3910 34 1 -3.4779 -8.2704 0.7728 35 1 -0.3926 -1.7406 -1.0532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334524337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:26 Heat of formation + Delta-G solvation = -72.342459 kcal Electronic energy + Delta-G solvation = -21050.982513 eV Core-core repulsion = 17653.276471 eV Total energy + Delta-G solvation = -3397.706041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40629 -38.77349 -37.37292 -35.56016 -34.55574 -33.14947 -32.25016 -29.78987 -29.46334 -28.69706 -25.33815 -23.45912 -22.49438 -21.55678 -20.74903 -19.56295 -17.71629 -17.29160 -16.76459 -16.30390 -15.81772 -15.38940 -14.99593 -14.54417 -14.25487 -13.92487 -13.43907 -13.03504 -12.90491 -12.61731 -12.39300 -12.10067 -11.68937 -11.57553 -11.50708 -11.39686 -11.16558 -11.03324 -10.95936 -10.62443 -10.35577 -10.12392 -9.84852 -9.80175 -9.54490 -9.20213 -9.00987 -7.59351 -7.06701 -6.75469 -4.50684 2.30918 2.79198 2.93173 3.04380 3.07532 3.10991 3.17316 3.55179 3.82555 3.88924 4.28454 4.52741 4.74941 4.81674 4.99265 5.08521 5.22177 5.40553 5.51898 5.57684 5.59335 5.76506 6.08262 6.15583 6.47738 6.59284 6.69120 6.83991 6.95557 7.11076 7.27592 7.52857 7.61195 7.82015 8.02685 8.08478 8.39117 8.58920 8.74389 8.76964 10.14793 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.003988 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.825295 B = 7019.716422 C = 7561.297823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.109 3.891 10 C -0.202 4.202 11 C -0.074 4.074 12 C 0.009 3.991 13 N -0.648 5.648 14 C 0.511 3.489 15 O -0.525 6.525 16 C -0.145 4.145 17 H 0.108 0.892 18 C -0.139 4.139 19 C 0.046 3.954 20 O -0.374 6.374 21 C 0.056 3.944 22 C -0.020 4.020 23 Cl -0.119 7.119 24 C -0.136 4.136 25 H 0.282 0.718 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.398 0.602 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -12.512 -0.040 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.147 4.147 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.106 3.894 10 C -0.222 4.222 11 C -0.094 4.094 12 C -0.085 4.085 13 N -0.291 5.291 14 C 0.297 3.703 15 O -0.401 6.401 16 C -0.167 4.167 17 H 0.126 0.874 18 C -0.177 4.177 19 C -0.031 4.031 20 O -0.293 6.293 21 C -0.021 4.021 22 C -0.049 4.049 23 Cl -0.091 7.091 24 C -0.157 4.157 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.136 0.864 28 H 0.233 0.767 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.149 -12.028 0.648 12.739 hybrid contribution 0.024 0.516 -0.565 0.765 sum -4.124 -11.512 0.083 12.229 Atomic orbital electron populations 1.69729 1.07358 1.29271 1.36527 1.25937 0.94995 1.01449 0.92360 0.86132 0.80225 0.80127 0.79193 1.19367 1.20149 1.18579 1.19515 0.94958 0.89906 1.44123 0.90067 1.17611 0.91268 0.92362 0.88190 1.20898 1.01487 0.94741 1.05119 1.20380 0.91933 0.98260 0.98836 1.16906 0.94492 0.85347 1.11721 1.42944 1.48596 1.20867 1.16729 1.20193 0.83180 0.84947 0.81992 1.90670 1.38772 1.70763 1.39899 1.22729 0.96368 0.96714 1.00917 0.87403 1.23112 0.97517 1.01669 0.95431 1.23608 0.88867 0.90808 0.99813 1.88901 1.51440 1.55129 1.33795 1.23163 0.89999 1.01991 0.86936 1.20424 0.86157 0.95521 1.02751 1.98252 1.30673 1.97926 1.82218 1.21215 0.97199 0.94548 1.02718 0.90702 0.87858 0.86447 0.76726 0.89820 0.88309 0.92155 0.88721 0.89075 0.91411 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.26 10.59 55.54 0.59 -19.67 16 2 C 0.07 1.68 5.42 -17.34 -0.09 1.59 16 3 Si 0.92 18.32 29.56 -169.99 -5.03 13.29 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.58 9.02 -37.86 -0.34 -11.92 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 9 C 0.11 2.79 5.55 -106.81 -0.59 2.20 16 10 C -0.20 -4.86 9.74 -39.25 -0.38 -5.24 16 11 C -0.07 -1.69 8.62 -39.80 -0.34 -2.03 16 12 C 0.01 0.19 6.32 -83.52 -0.53 -0.34 16 13 N -0.65 -11.23 4.84 -9.71 -0.05 -11.28 16 14 C 0.51 8.61 6.81 -10.99 -0.07 8.53 16 15 O -0.52 -10.84 12.85 5.56 0.07 -10.76 16 16 C -0.15 -1.75 3.44 -90.25 -0.31 -2.06 16 17 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 18 C -0.14 -1.58 6.50 -24.73 -0.16 -1.74 16 19 C 0.05 0.46 7.72 38.21 0.29 0.75 16 20 O -0.37 -5.02 11.52 -35.23 -0.41 -5.43 16 21 C 0.06 0.67 7.32 37.73 0.28 0.95 16 22 C -0.02 -0.46 6.30 -39.72 -0.25 -0.71 16 23 Cl -0.12 -2.25 27.92 -51.86 -1.45 -3.70 16 24 C -0.14 -3.41 8.38 -39.23 -0.33 -3.73 16 25 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 26 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 27 H 0.12 2.62 6.18 -52.49 -0.32 2.29 16 28 H 0.40 5.77 8.05 -40.82 -0.33 5.44 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.38 6.93 -51.93 -0.36 1.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.09 1.23 7.59 -51.93 -0.39 0.84 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.14 3.76 6.13 -52.48 -0.32 3.44 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -28.79 309.53 -8.25 -37.04 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.81 Total: 9.59 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.84 Total: -13.75 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.54 Total: -30.95 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.33 Total: -16.19 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -1.45 Total: -3.70 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.79 -8.25 -37.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334524337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.305 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds