Wall clock time and date at job start Tue Mar 31 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48496 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46891 * 300.00074 * 3 2 1 6 6 H 1.48503 * 109.46751 * 60.00199 * 3 2 1 7 7 C 1.39903 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99968 * 196.23531 * 7 2 1 9 9 C 1.41146 * 120.00492 * 16.23233 * 7 2 1 10 10 C 1.40888 * 120.16407 * 208.87996 * 9 7 2 11 11 C 1.36370 * 119.85264 * 180.02562 * 10 9 7 12 12 C 1.39465 * 120.17769 * 359.73094 * 11 10 9 13 13 N 1.39269 * 119.83866 * 180.29427 * 12 11 10 14 14 C 1.34777 * 119.99941 * 329.19149 * 13 12 11 15 15 O 1.21281 * 120.00288 * 4.66048 * 14 13 12 16 16 C 1.50700 * 120.00159 * 184.66493 * 14 13 12 17 17 H 1.09004 * 110.45694 * 302.60295 * 16 14 13 18 18 C 1.54507 * 110.51233 * 180.02562 * 16 14 13 19 19 C 1.54482 * 104.05978 * 241.35112 * 18 16 14 20 20 O 1.44423 * 104.80595 * 23.97954 * 19 18 16 21 21 C 1.44433 * 105.27255 * 319.48827 * 20 19 18 22 22 C 1.39579 * 120.32110 * 0.55020 * 12 11 10 23 23 Cl 1.73605 * 119.92548 * 179.72547 * 22 12 11 24 24 C 1.36471 * 120.14887 * 359.44201 * 22 12 11 25 25 H 0.97005 * 119.99766 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.07107 * 0.04653 * 10 9 7 27 27 H 1.08008 * 119.90815 * 180.02562 * 11 10 9 28 28 H 0.97004 * 120.00493 * 149.19167 * 13 12 11 29 29 H 1.08997 * 110.51197 * 359.97438 * 18 16 14 30 30 H 1.09002 * 110.50981 * 122.57692 * 18 16 14 31 31 H 1.09002 * 110.36746 * 142.81420 * 19 18 16 32 32 H 1.08997 * 110.37503 * 265.14608 * 19 18 16 33 33 H 1.08996 * 110.36702 * 281.67712 * 21 20 19 34 34 H 1.09003 * 110.36951 * 159.34166 * 21 20 19 35 35 H 1.07998 * 120.09313 * 180.25307 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3963 1.2126 7 6 2.0082 -1.2116 -0.0005 8 1 3.0560 -1.2305 0.2610 9 6 1.3447 -2.4095 -0.3428 10 6 1.7748 -3.6368 0.1993 11 6 1.1294 -4.7903 -0.1361 12 6 0.0423 -4.7571 -1.0091 13 7 -0.6154 -5.9387 -1.3420 14 6 0.0655 -7.1011 -1.3806 15 8 1.2302 -7.1332 -1.0440 16 6 -0.6202 -8.3612 -1.8422 17 1 -1.4979 -8.5640 -1.2283 18 6 0.3577 -9.5566 -1.7993 19 6 0.4413 -10.0259 -3.2688 20 8 0.0816 -8.8645 -4.0482 21 6 -1.0118 -8.2496 -3.3323 22 6 -0.3863 -3.5461 -1.5550 23 17 -1.7362 -3.5176 -2.6462 24 6 0.2497 -2.3837 -1.2283 25 1 -0.4850 0.8401 0.0004 26 1 2.6135 -3.6638 0.8792 27 1 1.4581 -5.7316 0.2793 28 1 -1.5636 -5.9251 -1.5461 29 1 1.3373 -9.2362 -1.4448 30 1 -0.0368 -10.3502 -1.1647 31 1 1.4559 -10.3443 -3.5082 32 1 -0.2642 -10.8371 -3.4488 33 1 -1.9401 -8.7884 -3.5221 34 1 -1.1135 -7.2034 -3.6207 35 1 -0.0853 -1.4467 -1.6480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334524347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:29 Heat of formation + Delta-G solvation = -71.746998 kcal Electronic energy + Delta-G solvation = -21080.435211 eV Core-core repulsion = 17682.754991 eV Total energy + Delta-G solvation = -3397.680220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41701 -38.72579 -37.32093 -35.57057 -34.54305 -33.17186 -32.21922 -29.76179 -29.44767 -28.70414 -25.34938 -23.57247 -22.45066 -21.54870 -20.70823 -19.52234 -17.73616 -17.25170 -16.70159 -16.20842 -15.88290 -15.39661 -15.07664 -14.50284 -14.27563 -13.94119 -13.45219 -13.05895 -12.77784 -12.61714 -12.34836 -12.05828 -11.84093 -11.55195 -11.42784 -11.31453 -11.16398 -11.04718 -10.95505 -10.51488 -10.38426 -10.18477 -9.99729 -9.83159 -9.59615 -9.14349 -8.86111 -7.59354 -7.13457 -6.88076 -4.45340 2.33575 2.80366 2.91141 3.03449 3.08797 3.10347 3.18651 3.60176 3.85843 3.88753 4.34637 4.46888 4.74121 4.85523 5.00167 5.09495 5.31163 5.42463 5.47143 5.57630 5.61207 5.73123 6.11016 6.17524 6.51089 6.59953 6.66778 6.83699 6.98391 7.06378 7.26991 7.48105 7.63493 7.81874 8.04770 8.08563 8.37351 8.61280 8.71264 8.77280 10.06190 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.003977 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.077417 B = 7038.164291 C = 7646.860788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.211 4.211 11 C -0.072 4.072 12 C 0.001 3.999 13 N -0.646 5.646 14 C 0.511 3.489 15 O -0.526 6.526 16 C -0.145 4.145 17 H 0.108 0.892 18 C -0.146 4.146 19 C 0.046 3.954 20 O -0.369 6.369 21 C 0.056 3.944 22 C -0.015 4.015 23 Cl -0.121 7.121 24 C -0.143 4.143 25 H 0.283 0.717 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.398 0.602 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 -11.959 -3.301 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.231 4.231 11 C -0.092 4.092 12 C -0.092 4.092 13 N -0.289 5.289 14 C 0.297 3.703 15 O -0.403 6.403 16 C -0.167 4.167 17 H 0.126 0.874 18 C -0.184 4.184 19 C -0.031 4.031 20 O -0.288 6.288 21 C -0.022 4.022 22 C -0.043 4.043 23 Cl -0.093 7.093 24 C -0.164 4.164 25 H 0.094 0.906 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.232 0.768 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.115 -11.762 -3.363 12.907 hybrid contribution -0.597 0.793 0.073 0.995 sum -4.712 -10.969 -3.290 12.383 Atomic orbital electron populations 1.69821 1.07578 1.29589 1.34327 1.25952 0.94810 1.01505 0.92136 0.86216 0.81009 0.80648 0.78669 1.18258 1.19576 1.19886 1.19584 0.97802 0.90798 1.40196 0.89801 1.17553 0.90289 0.92608 0.88337 1.20834 1.04319 0.92590 1.05327 1.20531 0.94570 0.98571 0.95492 1.16852 1.02174 0.83046 1.07169 1.42892 1.11997 1.06246 1.67725 1.20157 0.86993 0.84588 0.78547 1.90617 1.16701 1.85125 1.47817 1.22699 1.00393 0.94728 0.98901 0.87385 1.22992 1.01941 0.95936 0.97540 1.23440 1.01181 0.88671 0.89829 1.89178 1.51465 1.40829 1.47313 1.23410 0.90485 0.99963 0.88326 1.20332 0.92324 0.94747 0.96913 1.98250 1.47413 1.98856 1.64732 1.20799 0.99366 0.95341 1.00849 0.90588 0.87935 0.85823 0.76764 0.87976 0.90194 0.88925 0.92373 0.91249 0.88484 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.61 11.16 55.55 0.62 -18.99 16 2 C 0.07 1.80 5.13 -17.34 -0.09 1.71 16 3 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.45 -11.60 9.02 -37.86 -0.34 -11.94 16 8 H 0.08 2.06 7.90 -52.48 -0.41 1.64 16 9 C 0.12 2.98 5.53 -106.80 -0.59 2.39 16 10 C -0.21 -5.12 9.74 -39.25 -0.38 -5.50 16 11 C -0.07 -1.66 8.65 -39.80 -0.34 -2.01 16 12 C 0.00 0.03 6.39 -83.52 -0.53 -0.51 16 13 N -0.65 -11.40 4.89 -9.71 -0.05 -11.45 16 14 C 0.51 8.68 6.93 -10.99 -0.08 8.61 16 15 O -0.53 -10.83 12.42 5.56 0.07 -10.77 16 16 C -0.15 -1.74 3.51 -90.21 -0.32 -2.06 16 17 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.15 -1.63 6.67 -25.16 -0.17 -1.80 16 19 C 0.05 0.48 7.63 37.94 0.29 0.77 16 20 O -0.37 -5.15 11.65 -35.23 -0.41 -5.56 16 21 C 0.06 0.64 7.17 37.93 0.27 0.92 16 22 C -0.02 -0.34 6.30 -39.72 -0.25 -0.59 16 23 Cl -0.12 -2.29 27.84 -51.86 -1.44 -3.73 16 24 C -0.14 -3.59 8.37 -39.23 -0.33 -3.92 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 27 H 0.12 2.81 5.86 -52.48 -0.31 2.51 16 28 H 0.40 5.93 7.92 -40.82 -0.32 5.60 16 29 H 0.10 1.40 6.50 -51.93 -0.34 1.07 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.21 7.72 -51.93 -0.40 0.81 16 35 H 0.13 3.34 6.43 -52.49 -0.34 3.00 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -28.90 309.31 -8.23 -37.14 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.79 Total: 9.60 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.86 Total: -13.93 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.57 Total: -30.43 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.34 Total: -16.32 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.44 Total: -3.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.90 -8.23 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334524347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.611 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds