Wall clock time and date at job start Tue Mar 31 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48496 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46891 * 300.00074 * 3 2 1 6 6 H 1.48503 * 109.46751 * 60.00199 * 3 2 1 7 7 C 1.39903 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99968 * 196.23531 * 7 2 1 9 9 C 1.41146 * 120.00492 * 16.23233 * 7 2 1 10 10 C 1.40888 * 120.16407 * 208.87996 * 9 7 2 11 11 C 1.36370 * 119.85264 * 180.02562 * 10 9 7 12 12 C 1.39465 * 120.17769 * 359.73094 * 11 10 9 13 13 N 1.39269 * 119.83866 * 180.29427 * 12 11 10 14 14 C 1.34777 * 119.99941 * 329.19149 * 13 12 11 15 15 O 1.21281 * 120.00288 * 4.66048 * 14 13 12 16 16 C 1.50700 * 120.00159 * 184.66493 * 14 13 12 17 17 H 1.09004 * 110.45694 * 302.60295 * 16 14 13 18 18 C 1.54507 * 110.51233 * 180.02562 * 16 14 13 19 19 C 1.54482 * 104.05978 * 241.35112 * 18 16 14 20 20 O 1.44423 * 104.80595 * 23.97954 * 19 18 16 21 21 C 1.44433 * 105.27255 * 319.48827 * 20 19 18 22 22 C 1.39579 * 120.32110 * 0.55020 * 12 11 10 23 23 Cl 1.73605 * 119.92548 * 179.72547 * 22 12 11 24 24 C 1.36471 * 120.14887 * 359.44201 * 22 12 11 25 25 H 0.97005 * 119.99766 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.07107 * 0.04653 * 10 9 7 27 27 H 1.08008 * 119.90815 * 180.02562 * 11 10 9 28 28 H 0.97004 * 120.00493 * 149.19167 * 13 12 11 29 29 H 1.08997 * 110.51197 * 359.97438 * 18 16 14 30 30 H 1.09002 * 110.50981 * 122.57692 * 18 16 14 31 31 H 1.09002 * 110.36746 * 142.81420 * 19 18 16 32 32 H 1.08997 * 110.37503 * 265.14608 * 19 18 16 33 33 H 1.08996 * 110.36702 * 281.67712 * 21 20 19 34 34 H 1.09003 * 110.36951 * 159.34166 * 21 20 19 35 35 H 1.07998 * 120.09313 * 180.25307 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3963 1.2126 7 6 2.0082 -1.2116 -0.0005 8 1 3.0560 -1.2305 0.2610 9 6 1.3447 -2.4095 -0.3428 10 6 1.7748 -3.6368 0.1993 11 6 1.1294 -4.7903 -0.1361 12 6 0.0423 -4.7571 -1.0091 13 7 -0.6154 -5.9387 -1.3420 14 6 0.0655 -7.1011 -1.3806 15 8 1.2302 -7.1332 -1.0440 16 6 -0.6202 -8.3612 -1.8422 17 1 -1.4979 -8.5640 -1.2283 18 6 0.3577 -9.5566 -1.7993 19 6 0.4413 -10.0259 -3.2688 20 8 0.0816 -8.8645 -4.0482 21 6 -1.0118 -8.2496 -3.3323 22 6 -0.3863 -3.5461 -1.5550 23 17 -1.7362 -3.5176 -2.6462 24 6 0.2497 -2.3837 -1.2283 25 1 -0.4850 0.8401 0.0004 26 1 2.6135 -3.6638 0.8792 27 1 1.4581 -5.7316 0.2793 28 1 -1.5636 -5.9251 -1.5461 29 1 1.3373 -9.2362 -1.4448 30 1 -0.0368 -10.3502 -1.1647 31 1 1.4559 -10.3443 -3.5082 32 1 -0.2642 -10.8371 -3.4488 33 1 -1.9401 -8.7884 -3.5221 34 1 -1.1135 -7.2034 -3.6207 35 1 -0.0853 -1.4467 -1.6480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334524347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:28 Heat of formation + Delta-G solvation = -89.412738 kcal Electronic energy + Delta-G solvation = -21081.201255 eV Core-core repulsion = 17682.754991 eV Total energy + Delta-G solvation = -3398.446264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70842 -40.03800 -38.88455 -37.27167 -36.19800 -34.87374 -33.27713 -31.34003 -31.10384 -29.98750 -27.05238 -24.72843 -23.77339 -23.10082 -22.30103 -20.86640 -19.47605 -18.69526 -18.02345 -17.37712 -17.16374 -16.91760 -16.15942 -15.98948 -15.89403 -15.27499 -15.02672 -14.72519 -14.38152 -14.09461 -13.82995 -13.56470 -12.99117 -12.95243 -12.87072 -12.68210 -12.43850 -12.35650 -12.17099 -12.04978 -11.91432 -11.86127 -11.61057 -11.32289 -10.93979 -10.75359 -10.41431 -9.44159 -8.93276 -8.67746 -6.35864 0.59931 0.92106 1.35147 1.39545 1.42251 1.55178 1.69736 2.20536 2.23408 2.64807 3.03141 3.40660 3.55251 3.72281 3.93837 4.18787 4.27897 4.33065 4.45067 4.63959 4.67507 4.73491 4.84561 4.87488 4.93819 4.97203 5.18533 5.22037 5.24851 5.41611 5.65332 5.81814 5.82941 5.97398 6.19730 6.47377 6.59914 6.81861 6.84768 7.27258 8.28629 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.003977 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.077417 B = 7038.164291 C = 7646.860788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.038 3.962 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.224 4.224 11 C -0.081 4.081 12 C 0.013 3.987 13 N -0.642 5.642 14 C 0.506 3.494 15 O -0.565 6.565 16 C -0.137 4.137 17 H 0.149 0.851 18 C -0.145 4.145 19 C 0.043 3.957 20 O -0.405 6.405 21 C 0.054 3.946 22 C -0.023 4.023 23 Cl -0.086 7.086 24 C -0.160 4.160 25 H 0.291 0.709 26 H 0.106 0.894 27 H 0.127 0.873 28 H 0.413 0.587 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -13.311 -3.875 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.084 3.916 10 C -0.244 4.244 11 C -0.101 4.101 12 C -0.082 4.082 13 N -0.286 5.286 14 C 0.295 3.705 15 O -0.445 6.445 16 C -0.158 4.158 17 H 0.167 0.833 18 C -0.183 4.183 19 C -0.033 4.033 20 O -0.324 6.324 21 C -0.023 4.023 22 C -0.051 4.051 23 Cl -0.057 7.057 24 C -0.181 4.181 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.250 0.750 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.688 -13.150 -3.948 14.862 hybrid contribution -0.190 1.042 0.200 1.078 sum -5.878 -12.108 -3.748 13.972 Atomic orbital electron populations 1.69859 1.08881 1.30908 1.34757 1.26738 0.95533 1.04416 0.91105 0.85141 0.79407 0.76107 0.79008 1.18223 1.18864 1.18937 1.19798 0.97984 0.91924 1.42205 0.90079 1.17848 0.91222 0.93306 0.89176 1.20991 1.04821 0.92847 1.05720 1.20654 0.95193 0.98215 0.96059 1.16944 1.01313 0.84512 1.05452 1.42908 1.12734 1.05253 1.67737 1.21188 0.86691 0.85600 0.77001 1.90606 1.18734 1.85851 1.49267 1.22812 1.01433 0.91687 0.99882 0.83304 1.23016 1.00215 0.96489 0.98612 1.23634 1.02266 0.88528 0.88860 1.89144 1.52548 1.42259 1.48495 1.23571 0.91497 0.99857 0.87327 1.20372 0.93159 0.94312 0.97259 1.98247 1.45324 1.98821 1.63337 1.20718 1.00150 0.95640 1.01593 0.89797 0.87575 0.85561 0.74955 0.91232 0.86807 0.89013 0.89060 0.87195 0.89957 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.51 11.16 21.82 0.24 -41.27 16 2 C 0.04 1.87 5.13 85.24 0.44 2.30 16 3 Si 0.98 37.32 29.59 68.60 2.03 39.35 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.49 -25.94 9.02 23.39 0.21 -25.73 16 8 H 0.08 4.16 7.90 -2.91 -0.02 4.13 16 9 C 0.09 4.70 5.53 -21.28 -0.12 4.58 16 10 C -0.22 -11.31 9.74 22.48 0.22 -11.09 16 11 C -0.08 -3.85 8.65 22.13 0.19 -3.66 16 12 C 0.01 0.55 6.39 38.58 0.25 0.80 16 13 N -0.64 -21.84 4.89 -303.02 -1.48 -23.33 16 14 C 0.51 16.56 6.93 87.66 0.61 17.17 16 15 O -0.57 -23.37 12.42 -3.03 -0.04 -23.41 16 16 C -0.14 -2.85 3.51 -10.53 -0.04 -2.88 16 17 H 0.15 1.93 8.14 -2.38 -0.02 1.91 16 18 C -0.15 -2.85 6.67 31.61 0.21 -2.64 16 19 C 0.04 0.79 7.63 72.49 0.55 1.35 16 20 O -0.41 -10.42 11.65 -148.98 -1.74 -12.16 16 21 C 0.05 1.09 7.17 72.48 0.52 1.61 16 22 C -0.02 -1.03 6.30 22.18 0.14 -0.89 16 23 Cl -0.09 -3.15 27.84 -2.72 -0.08 -3.23 16 24 C -0.16 -8.28 8.37 22.50 0.19 -8.09 16 25 H 0.29 13.29 8.30 -92.70 -0.77 12.52 16 26 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 27 H 0.13 5.88 5.86 -2.91 -0.02 5.86 16 28 H 0.41 11.39 7.92 -92.71 -0.73 10.66 16 29 H 0.07 1.86 6.50 -2.39 -0.02 1.85 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.87 7.72 -2.39 -0.02 1.85 16 35 H 0.11 6.13 6.43 -2.91 -0.02 6.12 16 Total: -1.00 -65.34 309.31 2.72 -62.63 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.40 Total: 28.58 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 3.37 Total: -27.17 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -1.24 Total: -64.59 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.77 Total: -35.56 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -0.08 Total: -3.23 kcal Total: -65.34 2.72 -62.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334524347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.788 kcal (2) G-P(sol) polarization free energy of solvation -65.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds