Wall clock time and date at job start Tue Mar 31 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86801 * 120.00292 * 2 1 4 4 H 1.48504 * 109.47316 * 240.00310 * 3 2 1 5 5 H 1.48501 * 109.47009 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47168 * 119.99774 * 3 2 1 7 7 C 1.39899 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 175.19548 * 7 2 1 9 9 C 1.41150 * 120.00189 * 355.18482 * 7 2 1 10 10 C 1.40894 * 120.15813 * 214.93294 * 9 7 2 11 11 C 1.36376 * 119.84514 * 179.97438 * 10 9 7 12 12 C 1.39467 * 120.18145 * 0.02562 * 11 10 9 13 13 N 1.39264 * 119.83826 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99904 * 335.08778 * 13 12 11 15 15 O 1.21280 * 120.00249 * 354.43069 * 14 13 12 16 16 C 1.50705 * 120.00016 * 174.43174 * 14 13 12 17 17 H 1.09000 * 110.42002 * 302.69677 * 16 14 13 18 18 C 1.54482 * 110.36916 * 64.99898 * 16 14 13 19 19 C 1.54512 * 104.06298 * 142.81156 * 18 16 14 20 20 C 1.54484 * 104.18191 * 359.93141 * 19 18 16 21 21 O 1.44420 * 110.37363 * 180.38144 * 16 14 13 22 22 C 1.39583 * 120.32061 * 0.26990 * 12 11 10 23 23 Cl 1.73600 * 119.92100 * 179.70546 * 22 12 11 24 24 C 1.36475 * 120.14538 * 359.44894 * 22 12 11 25 25 H 0.97004 * 119.99784 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.07734 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.90530 * 179.97438 * 11 10 9 28 28 H 0.97003 * 120.00365 * 155.08718 * 13 12 11 29 29 H 1.08996 * 110.51064 * 24.16598 * 18 16 14 30 30 H 1.09000 * 110.51578 * 261.45341 * 18 16 14 31 31 H 1.08996 * 110.51383 * 118.64064 * 19 18 16 32 32 H 1.09002 * 110.51104 * 241.21950 * 19 18 16 33 33 H 1.09000 * 110.37338 * 94.92054 * 20 19 18 34 34 H 1.08997 * 110.37204 * 217.25639 * 20 19 18 35 35 H 1.08005 * 120.08682 * 180.29270 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0853 -1.2132 -0.0789 9 6 1.3061 -2.4319 0.1015 10 6 1.8682 -3.5151 0.8057 11 6 1.1841 -4.6910 0.9007 12 6 -0.0688 -4.8236 0.3027 13 7 -0.7614 -6.0275 0.4047 14 6 -0.0881 -7.1771 0.6085 15 8 1.1247 -7.1789 0.6022 16 6 -0.8422 -8.4605 0.8440 17 1 -1.5056 -8.3595 1.7029 18 6 -1.6481 -8.8495 -0.4152 19 6 -1.5412 -10.3900 -0.4683 20 6 -0.6820 -10.7525 0.7633 21 8 0.0784 -9.5548 1.0456 22 6 -0.6298 -3.7572 -0.4019 23 17 -2.1867 -3.9361 -1.1487 24 6 0.0407 -2.5726 -0.5004 25 1 -0.4850 0.8401 0.0004 26 1 2.8381 -3.4141 1.2698 27 1 1.6142 -5.5221 1.4399 28 1 -1.7284 -6.0387 0.3291 29 1 -1.2037 -8.4048 -1.3055 30 1 -2.6889 -8.5423 -0.3126 31 1 -2.5290 -10.8443 -0.3919 32 1 -1.0460 -10.7070 -1.3861 33 1 -1.3202 -11.0044 1.6103 34 1 -0.0150 -11.5822 0.5297 35 1 -0.3963 -1.7465 -1.0419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334532528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:21 Heat of formation + Delta-G solvation = -67.725175 kcal Electronic energy + Delta-G solvation = -20946.858173 eV Core-core repulsion = 17549.352353 eV Total energy + Delta-G solvation = -3397.505821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.32574 -38.80670 -37.26968 -35.56855 -34.51043 -33.15171 -32.18722 -30.19635 -29.46256 -28.64238 -25.36100 -23.69055 -21.91226 -21.61945 -20.93487 -19.72659 -17.77687 -17.30041 -16.78517 -16.32418 -15.49458 -15.32837 -15.02089 -14.47668 -14.22405 -13.91042 -13.54149 -13.30701 -12.91741 -12.62831 -12.42965 -11.96367 -11.77004 -11.72637 -11.53205 -11.40364 -11.12068 -10.99926 -10.93579 -10.53632 -10.39736 -10.12388 -10.06095 -9.91228 -9.49868 -9.19061 -8.83720 -7.58235 -7.00360 -6.73627 -4.46779 2.29222 2.80686 2.96345 3.04997 3.06799 3.07964 3.21780 3.25478 3.90457 4.04129 4.36802 4.53976 4.61850 4.70685 4.92021 4.96761 5.20757 5.37187 5.44123 5.46493 5.57100 5.73118 5.81991 6.15801 6.47112 6.50561 6.65219 6.85661 6.97402 7.13356 7.29670 7.54409 7.63398 7.85777 8.04605 8.11818 8.41522 8.60498 8.76397 8.79608 10.17110 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.003800 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.157632 B = 7366.566736 C = 8133.011548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.106 3.894 10 C -0.198 4.198 11 C -0.085 4.085 12 C 0.018 3.982 13 N -0.645 5.645 14 C 0.505 3.495 15 O -0.509 6.509 16 C 0.060 3.940 17 H 0.094 0.906 18 C -0.147 4.147 19 C -0.153 4.153 20 C 0.041 3.959 21 O -0.344 6.344 22 C -0.025 4.025 23 Cl -0.120 7.120 24 C -0.133 4.133 25 H 0.281 0.719 26 H 0.104 0.896 27 H 0.126 0.874 28 H 0.399 0.601 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 -12.662 -0.029 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.147 4.147 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.103 3.897 10 C -0.218 4.218 11 C -0.105 4.105 12 C -0.076 4.076 13 N -0.290 5.290 14 C 0.291 3.709 15 O -0.384 6.384 16 C -0.002 4.002 17 H 0.111 0.889 18 C -0.185 4.185 19 C -0.191 4.191 20 C -0.036 4.036 21 O -0.262 6.262 22 C -0.053 4.053 23 Cl -0.092 7.092 24 C -0.153 4.153 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.234 0.766 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.271 -12.533 -0.012 14.014 hybrid contribution -0.679 0.722 -0.097 0.996 sum -6.950 -11.811 -0.108 13.704 Atomic orbital electron populations 1.69726 1.07315 1.29259 1.36930 1.25922 0.95002 1.01377 0.92354 0.86185 0.79782 0.79769 0.79905 1.18921 1.20334 1.18974 1.19477 0.94985 0.89911 1.44266 0.90125 1.17605 0.91236 0.92312 0.88540 1.20938 1.01387 0.94453 1.04995 1.20545 0.93092 0.97954 0.98938 1.16941 0.96506 0.84942 1.09218 1.42878 1.09982 1.05252 1.70884 1.20058 0.88297 0.84111 0.78471 1.90678 1.13518 1.85467 1.48705 1.22849 0.90901 0.87873 0.98556 0.88887 1.22951 1.00960 0.96338 0.98294 1.22933 1.01004 0.95357 0.99759 1.23523 0.94845 0.89065 0.96159 1.89316 1.33210 1.13695 1.89964 1.20376 0.86887 0.96612 1.01467 1.98247 1.30822 1.97908 1.82227 1.21212 0.96933 0.94692 1.02512 0.90742 0.87786 0.85674 0.76608 0.89831 0.89535 0.90235 0.90352 0.92037 0.88694 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.17 10.59 55.55 0.59 -19.59 16 2 C 0.07 1.70 5.42 -17.34 -0.09 1.60 16 3 Si 0.92 18.38 29.56 -169.99 -5.03 13.35 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.71 9.02 -37.86 -0.34 -12.06 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.11 2.75 5.55 -106.80 -0.59 2.16 16 10 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 11 C -0.09 -2.00 8.64 -39.79 -0.34 -2.34 16 12 C 0.02 0.39 6.44 -83.52 -0.54 -0.15 16 13 N -0.65 -11.54 5.14 -9.71 -0.05 -11.59 16 14 C 0.51 9.07 6.87 -10.98 -0.08 8.99 16 15 O -0.51 -11.34 13.68 -13.66 -0.19 -11.53 16 16 C 0.06 0.79 3.72 -27.10 -0.10 0.69 16 17 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.15 -1.51 6.61 -25.16 -0.17 -1.68 16 19 C -0.15 -1.27 7.08 -25.16 -0.18 -1.45 16 20 C 0.04 0.39 7.65 37.94 0.29 0.68 16 21 O -0.34 -5.09 10.91 -54.45 -0.59 -5.69 16 22 C -0.03 -0.57 6.30 -39.72 -0.25 -0.82 16 23 Cl -0.12 -2.26 27.75 -51.86 -1.44 -3.69 16 24 C -0.13 -3.34 8.38 -39.23 -0.33 -3.67 16 25 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 26 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 27 H 0.13 2.93 5.76 -52.49 -0.30 2.63 16 28 H 0.40 5.97 7.74 -40.82 -0.32 5.66 16 29 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.15 3.78 6.13 -52.48 -0.32 3.46 16 LS Contribution 310.94 15.07 4.69 4.69 Total: -1.00 -29.54 310.94 -8.98 -38.52 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.85 Total: 8.78 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.10 Total: -13.25 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.54 Total: -31.18 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.78 Total: -17.21 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.44 Total: -3.69 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.54 -8.98 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334532528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.204 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds