Wall clock time and date at job start Tue Mar 31 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86801 * 120.00292 * 2 1 4 4 H 1.48504 * 109.47316 * 240.00310 * 3 2 1 5 5 H 1.48501 * 109.47009 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47168 * 119.99774 * 3 2 1 7 7 C 1.39899 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 175.19548 * 7 2 1 9 9 C 1.41150 * 120.00189 * 355.18482 * 7 2 1 10 10 C 1.40894 * 120.15813 * 214.93294 * 9 7 2 11 11 C 1.36376 * 119.84514 * 179.97438 * 10 9 7 12 12 C 1.39467 * 120.18145 * 0.02562 * 11 10 9 13 13 N 1.39264 * 119.83826 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99904 * 335.08778 * 13 12 11 15 15 O 1.21280 * 120.00249 * 354.43069 * 14 13 12 16 16 C 1.50705 * 120.00016 * 174.43174 * 14 13 12 17 17 H 1.09000 * 110.42002 * 302.69677 * 16 14 13 18 18 C 1.54482 * 110.36916 * 64.99898 * 16 14 13 19 19 C 1.54512 * 104.06298 * 142.81156 * 18 16 14 20 20 C 1.54484 * 104.18191 * 359.93141 * 19 18 16 21 21 O 1.44420 * 110.37363 * 180.38144 * 16 14 13 22 22 C 1.39583 * 120.32061 * 0.26990 * 12 11 10 23 23 Cl 1.73600 * 119.92100 * 179.70546 * 22 12 11 24 24 C 1.36475 * 120.14538 * 359.44894 * 22 12 11 25 25 H 0.97004 * 119.99784 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.07734 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.90530 * 179.97438 * 11 10 9 28 28 H 0.97003 * 120.00365 * 155.08718 * 13 12 11 29 29 H 1.08996 * 110.51064 * 24.16598 * 18 16 14 30 30 H 1.09000 * 110.51578 * 261.45341 * 18 16 14 31 31 H 1.08996 * 110.51383 * 118.64064 * 19 18 16 32 32 H 1.09002 * 110.51104 * 241.21950 * 19 18 16 33 33 H 1.09000 * 110.37338 * 94.92054 * 20 19 18 34 34 H 1.08997 * 110.37204 * 217.25639 * 20 19 18 35 35 H 1.08005 * 120.08682 * 180.29270 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0853 -1.2132 -0.0789 9 6 1.3061 -2.4319 0.1015 10 6 1.8682 -3.5151 0.8057 11 6 1.1841 -4.6910 0.9007 12 6 -0.0688 -4.8236 0.3027 13 7 -0.7614 -6.0275 0.4047 14 6 -0.0881 -7.1771 0.6085 15 8 1.1247 -7.1789 0.6022 16 6 -0.8422 -8.4605 0.8440 17 1 -1.5056 -8.3595 1.7029 18 6 -1.6481 -8.8495 -0.4152 19 6 -1.5412 -10.3900 -0.4683 20 6 -0.6820 -10.7525 0.7633 21 8 0.0784 -9.5548 1.0456 22 6 -0.6298 -3.7572 -0.4019 23 17 -2.1867 -3.9361 -1.1487 24 6 0.0407 -2.5726 -0.5004 25 1 -0.4850 0.8401 0.0004 26 1 2.8381 -3.4141 1.2698 27 1 1.6142 -5.5221 1.4399 28 1 -1.7284 -6.0387 0.3291 29 1 -1.2037 -8.4048 -1.3055 30 1 -2.6889 -8.5423 -0.3126 31 1 -2.5290 -10.8443 -0.3919 32 1 -1.0460 -10.7070 -1.3861 33 1 -1.3202 -11.0044 1.6103 34 1 -0.0150 -11.5822 0.5297 35 1 -0.3963 -1.7465 -1.0419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334532528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:20 Heat of formation + Delta-G solvation = -84.949833 kcal Electronic energy + Delta-G solvation = -20947.605091 eV Core-core repulsion = 17549.352353 eV Total energy + Delta-G solvation = -3398.252738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67175 -40.09331 -38.89351 -37.26815 -36.19411 -34.87764 -33.09626 -31.51450 -31.31335 -30.10935 -27.02179 -24.87755 -23.58012 -22.67764 -22.43629 -21.19941 -19.49480 -18.84006 -18.12946 -17.42492 -17.14529 -16.56266 -16.17823 -16.08436 -15.78726 -15.14884 -14.82720 -14.67272 -14.52711 -14.31622 -14.10667 -13.51523 -13.16121 -12.90328 -12.74917 -12.71655 -12.59973 -12.27466 -12.21086 -12.05788 -11.89510 -11.69588 -11.60974 -11.27691 -11.01964 -10.81984 -10.45526 -9.43460 -8.81918 -8.55746 -6.38926 0.55082 0.91770 1.34698 1.41859 1.43399 1.53177 1.68531 1.91517 2.23487 2.71352 3.07415 3.43695 3.52328 3.66747 3.90232 4.06789 4.22615 4.30757 4.36850 4.65576 4.67568 4.80853 4.85546 4.92670 4.97419 5.01316 5.13894 5.17195 5.27669 5.43386 5.64429 5.74828 5.81606 6.01252 6.20565 6.50094 6.54765 6.83719 6.89076 7.19536 8.36825 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.003800 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.157632 B = 7366.566736 C = 8133.011548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.078 3.922 10 C -0.209 4.209 11 C -0.096 4.096 12 C 0.028 3.972 13 N -0.637 5.637 14 C 0.502 3.498 15 O -0.558 6.558 16 C 0.064 3.936 17 H 0.126 0.874 18 C -0.146 4.146 19 C -0.146 4.146 20 C 0.033 3.967 21 O -0.386 6.386 22 C -0.030 4.030 23 Cl -0.083 7.083 24 C -0.149 4.149 25 H 0.288 0.712 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.416 0.584 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.957 -13.764 -0.056 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.097 0.903 9 C 0.075 3.925 10 C -0.229 4.229 11 C -0.116 4.116 12 C -0.067 4.067 13 N -0.283 5.283 14 C 0.290 3.710 15 O -0.435 6.435 16 C 0.003 3.997 17 H 0.143 0.857 18 C -0.184 4.184 19 C -0.183 4.183 20 C -0.043 4.043 21 O -0.305 6.305 22 C -0.059 4.059 23 Cl -0.054 7.054 24 C -0.170 4.170 25 H 0.099 0.901 26 H 0.126 0.874 27 H 0.142 0.858 28 H 0.253 0.747 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.244 -13.676 -0.045 15.968 hybrid contribution -0.167 0.882 -0.100 0.903 sum -8.411 -12.794 -0.145 15.312 Atomic orbital electron populations 1.69789 1.08553 1.30430 1.37185 1.26744 0.95803 1.04312 0.91351 0.85128 0.78504 0.75437 0.79897 1.18439 1.19229 1.18730 1.19714 0.95189 0.90920 1.46290 0.90265 1.17897 0.92166 0.92980 0.89441 1.21072 1.01831 0.94736 1.05282 1.20634 0.93946 0.97525 0.99465 1.17003 0.96026 0.86260 1.07403 1.42831 1.10679 1.04122 1.70644 1.21079 0.88051 0.85393 0.76457 1.90652 1.15973 1.86317 1.50605 1.22960 0.90349 0.85035 1.01315 0.85696 1.23020 1.01931 0.97706 0.95698 1.22945 1.02467 0.93869 0.99029 1.23827 0.95274 0.87476 0.97690 1.89281 1.35323 1.15519 1.90416 1.20372 0.88399 0.95916 1.01202 1.98245 1.27936 1.97769 1.81493 1.21123 0.97300 0.95318 1.03271 0.90115 0.87392 0.85834 0.74651 0.91838 0.86267 0.87005 0.90582 0.89699 0.87921 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.35 10.59 21.82 0.23 -42.12 16 2 C 0.03 1.55 5.42 85.24 0.46 2.01 16 3 Si 0.99 37.81 29.56 68.60 2.03 39.84 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.49 -26.08 9.02 23.39 0.21 -25.87 16 8 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 9 C 0.08 4.20 5.55 -21.28 -0.12 4.08 16 10 C -0.21 -10.63 9.74 22.49 0.22 -10.41 16 11 C -0.10 -4.60 8.64 22.13 0.19 -4.41 16 12 C 0.03 1.23 6.44 38.58 0.25 1.48 16 13 N -0.64 -22.08 5.14 -303.02 -1.56 -23.63 16 14 C 0.50 17.66 6.87 87.66 0.60 18.26 16 15 O -0.56 -25.25 13.68 15.34 0.21 -25.04 16 16 C 0.06 1.56 3.72 30.35 0.11 1.67 16 17 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 18 C -0.15 -2.52 6.61 31.61 0.21 -2.31 16 19 C -0.15 -1.90 7.08 31.61 0.22 -1.68 16 20 C 0.03 0.54 7.65 72.49 0.55 1.10 16 21 O -0.39 -10.88 10.91 -130.60 -1.43 -12.30 16 22 C -0.03 -1.37 6.30 22.18 0.14 -1.23 16 23 Cl -0.08 -2.99 27.75 -2.72 -0.08 -3.07 16 24 C -0.15 -7.70 8.38 22.49 0.19 -7.51 16 25 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 26 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 27 H 0.12 5.98 5.76 -2.91 -0.02 5.96 16 28 H 0.42 11.49 7.74 -92.71 -0.72 10.77 16 29 H 0.06 1.37 7.86 -2.39 -0.02 1.35 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.13 7.03 6.13 -2.91 -0.02 7.01 16 Total: -1.00 -66.78 310.94 3.07 -63.70 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.42 Total: 27.45 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.24 Total: -24.81 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.33 Total: -65.76 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.22 Total: -37.35 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -0.08 Total: -3.07 kcal Total: -66.78 3.07 -63.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334532528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.247 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds