Wall clock time and date at job start Tue Mar 31 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86796 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47352 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47237 * 299.99887 * 3 2 1 6 6 H 1.48493 * 109.47461 * 60.00093 * 3 2 1 7 7 C 1.39899 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99756 * 185.58513 * 7 2 1 9 9 C 1.41151 * 120.00389 * 5.59113 * 7 2 1 10 10 C 1.40887 * 120.16048 * 214.42678 * 9 7 2 11 11 C 1.36373 * 119.84943 * 180.25042 * 10 9 7 12 12 C 1.39464 * 120.17792 * 359.51752 * 11 10 9 13 13 N 1.39268 * 119.83750 * 180.23163 * 12 11 10 14 14 C 1.34776 * 120.00260 * 325.99368 * 13 12 11 15 15 O 1.21288 * 120.00023 * 354.21728 * 14 13 12 16 16 C 1.50697 * 120.00328 * 174.21811 * 14 13 12 17 17 H 1.09002 * 110.33230 * 57.24856 * 16 14 13 18 18 C 1.54483 * 110.37207 * 295.00398 * 16 14 13 19 19 C 1.54512 * 104.06247 * 217.18869 * 18 16 14 20 20 C 1.54475 * 104.06074 * 359.97438 * 19 18 16 21 21 O 1.44419 * 104.80870 * 23.97900 * 20 19 18 22 22 C 1.39580 * 120.32356 * 0.25563 * 12 11 10 23 23 Cl 1.73601 * 119.92702 * 179.97438 * 22 12 11 24 24 C 1.36474 * 120.14791 * 359.97438 * 22 12 11 25 25 H 0.97001 * 120.00145 * 359.97438 * 1 2 3 26 26 H 1.08008 * 120.07637 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.90711 * 179.79575 * 11 10 9 28 28 H 0.96997 * 119.99832 * 145.99755 * 13 12 11 29 29 H 1.09006 * 110.50897 * 335.83368 * 18 16 14 30 30 H 1.09001 * 110.51255 * 98.54229 * 18 16 14 31 31 H 1.08993 * 110.51150 * 118.64007 * 19 18 16 32 32 H 1.08999 * 110.50815 * 241.35297 * 19 18 16 33 33 H 1.08998 * 110.37688 * 142.81510 * 20 19 18 34 34 H 1.09006 * 110.37134 * 265.03569 * 20 19 18 35 35 H 1.07996 * 120.09189 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2126 6 1 1.8840 2.3964 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0844 -1.2137 0.0916 9 6 1.3076 -2.4312 -0.1180 10 6 1.7662 -3.5795 0.5571 11 6 1.0873 -4.7558 0.4340 12 6 -0.0644 -4.8218 -0.3497 13 7 -0.7549 -6.0256 -0.4666 14 6 -0.0806 -7.1925 -0.4623 15 8 1.1322 -7.1921 -0.4626 16 6 -0.8336 -8.4979 -0.4573 17 1 -1.5019 -8.5529 -1.3166 18 6 -1.6323 -8.6530 0.8559 19 6 -1.5223 -10.1583 1.1867 20 6 -0.6707 -10.7346 0.0339 21 8 0.0873 -9.6102 -0.4629 22 6 -0.5280 -3.6875 -1.0180 23 17 -1.9624 -3.7815 -1.9914 24 6 0.1437 -2.5046 -0.9079 25 1 -0.4850 0.8400 0.0004 26 1 2.6556 -3.5293 1.1679 27 1 1.4399 -5.6375 0.9485 28 1 -1.7212 -6.0241 -0.5511 29 1 -1.1840 -8.0539 1.6486 30 1 -2.6741 -8.3703 0.7049 31 1 -1.0196 -10.3034 2.1428 32 1 -2.5097 -10.6196 1.1993 33 1 -0.0004 -11.5087 0.4075 34 1 -1.3140 -11.1363 -0.7490 35 1 -0.2160 -1.6274 -1.4250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334532529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:24 Heat of formation + Delta-G solvation = -71.497190 kcal Electronic energy + Delta-G solvation = -20943.165745 eV Core-core repulsion = 17545.496358 eV Total energy + Delta-G solvation = -3397.669387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29500 -38.78655 -37.28396 -35.56333 -34.50464 -33.14332 -32.19037 -30.17757 -29.49305 -28.68046 -25.36087 -23.67674 -21.88901 -21.65266 -20.91389 -19.70857 -17.71988 -17.37418 -16.86316 -16.28898 -15.47567 -15.28647 -15.04000 -14.50976 -14.25713 -13.88833 -13.50128 -13.32869 -12.96651 -12.57863 -12.30131 -11.96669 -11.89094 -11.82363 -11.52351 -11.34915 -11.15401 -11.00059 -10.92884 -10.48742 -10.37271 -10.13681 -10.06024 -9.82614 -9.51154 -9.24285 -8.90030 -7.60713 -7.07144 -6.80311 -4.47760 2.31099 2.77871 2.92950 3.05056 3.06148 3.10285 3.15455 3.32247 3.88995 4.05189 4.37513 4.51982 4.61898 4.71831 4.93383 4.97555 5.22057 5.37972 5.43435 5.47359 5.57574 5.73744 5.82536 6.10638 6.47193 6.52024 6.65100 6.83347 6.94857 7.10347 7.26514 7.48490 7.61817 7.81837 8.03237 8.06159 8.38938 8.61776 8.73599 8.77755 10.14395 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.003786 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.922552 B = 7394.741197 C = 7986.945214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.201 4.201 11 C -0.071 4.071 12 C 0.014 3.986 13 N -0.647 5.647 14 C 0.506 3.494 15 O -0.510 6.510 16 C 0.059 3.941 17 H 0.092 0.908 18 C -0.146 4.146 19 C -0.153 4.153 20 C 0.041 3.959 21 O -0.343 6.343 22 C -0.018 4.018 23 Cl -0.119 7.119 24 C -0.133 4.133 25 H 0.282 0.718 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.398 0.602 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 -12.307 0.940 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.221 4.221 11 C -0.091 4.091 12 C -0.080 4.080 13 N -0.292 5.292 14 C 0.292 3.708 15 O -0.384 6.384 16 C -0.002 4.002 17 H 0.110 0.890 18 C -0.184 4.184 19 C -0.191 4.191 20 C -0.036 4.036 21 O -0.261 6.261 22 C -0.046 4.046 23 Cl -0.091 7.091 24 C -0.154 4.154 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.233 0.767 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.237 -12.189 0.808 13.716 hybrid contribution -0.674 0.749 -0.040 1.008 sum -6.910 -11.440 0.768 13.387 Atomic orbital electron populations 1.69771 1.07359 1.29292 1.36304 1.25919 0.94954 1.01363 0.92316 0.86137 0.80718 0.80598 0.78559 1.18406 1.19756 1.19909 1.19557 0.95235 0.89883 1.44034 0.89926 1.17572 0.90793 0.92510 0.88007 1.20886 1.02951 0.93523 1.04744 1.20240 0.94236 0.97617 0.97046 1.16810 0.99749 0.83760 1.07662 1.42837 1.09900 1.04256 1.72254 1.20084 0.88330 0.84500 0.77923 1.90724 1.13487 1.86864 1.47323 1.22834 0.90947 0.87385 0.99038 0.89007 1.22935 1.00997 0.97359 0.97112 1.22939 1.01028 0.95045 1.00059 1.23480 0.94949 0.90187 0.95021 1.89288 1.33328 1.17384 1.86105 1.20385 0.90318 0.95777 0.98160 1.98252 1.40800 1.98644 1.71398 1.20948 0.97977 0.94874 1.01575 0.90750 0.87768 0.87029 0.76728 0.89847 0.89535 0.90336 0.90228 0.88745 0.92079 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.00 10.95 55.55 0.61 -19.39 16 2 C 0.07 1.73 5.31 -17.34 -0.09 1.64 16 3 Si 0.92 18.23 29.56 -169.99 -5.03 13.21 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -11.67 9.03 -37.86 -0.34 -12.01 16 8 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 9 C 0.11 2.94 5.51 -106.80 -0.59 2.35 16 10 C -0.20 -4.86 9.74 -39.25 -0.38 -5.25 16 11 C -0.07 -1.65 8.57 -39.80 -0.34 -1.99 16 12 C 0.01 0.30 6.28 -83.52 -0.52 -0.23 16 13 N -0.65 -11.52 5.01 -9.71 -0.05 -11.57 16 14 C 0.51 9.12 6.79 -10.99 -0.07 9.05 16 15 O -0.51 -11.50 14.28 -13.65 -0.19 -11.70 16 16 C 0.06 0.79 3.71 -27.11 -0.10 0.69 16 17 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 18 C -0.15 -1.49 6.61 -25.16 -0.17 -1.65 16 19 C -0.15 -1.27 7.09 -25.16 -0.18 -1.45 16 20 C 0.04 0.39 7.63 37.93 0.29 0.68 16 21 O -0.34 -5.12 10.91 -54.44 -0.59 -5.71 16 22 C -0.02 -0.41 6.30 -39.72 -0.25 -0.66 16 23 Cl -0.12 -2.26 27.90 -51.86 -1.45 -3.71 16 24 C -0.13 -3.33 8.33 -39.23 -0.33 -3.66 16 25 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 26 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 27 H 0.11 2.54 6.46 -52.49 -0.34 2.20 16 28 H 0.40 5.90 8.02 -40.82 -0.33 5.57 16 29 H 0.08 0.97 7.87 -51.93 -0.41 0.56 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.13 3.47 6.45 -52.49 -0.34 3.13 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -29.72 312.67 -8.99 -38.70 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.92 Total: 7.95 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.08 Total: -12.49 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.56 Total: -30.96 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.79 Total: -17.41 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.45 Total: -3.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.72 -8.99 -38.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334532529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.792 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds