Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86796 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47352 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47237 * 299.99887 * 3 2 1 6 6 H 1.48493 * 109.47461 * 60.00093 * 3 2 1 7 7 C 1.39899 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99756 * 185.58513 * 7 2 1 9 9 C 1.41151 * 120.00389 * 5.59113 * 7 2 1 10 10 C 1.40887 * 120.16048 * 214.42678 * 9 7 2 11 11 C 1.36373 * 119.84943 * 180.25042 * 10 9 7 12 12 C 1.39464 * 120.17792 * 359.51752 * 11 10 9 13 13 N 1.39268 * 119.83750 * 180.23163 * 12 11 10 14 14 C 1.34776 * 120.00260 * 325.99368 * 13 12 11 15 15 O 1.21288 * 120.00023 * 354.21728 * 14 13 12 16 16 C 1.50697 * 120.00328 * 174.21811 * 14 13 12 17 17 H 1.09002 * 110.33230 * 57.24856 * 16 14 13 18 18 C 1.54483 * 110.37207 * 295.00398 * 16 14 13 19 19 C 1.54512 * 104.06247 * 217.18869 * 18 16 14 20 20 C 1.54475 * 104.06074 * 359.97438 * 19 18 16 21 21 O 1.44419 * 104.80870 * 23.97900 * 20 19 18 22 22 C 1.39580 * 120.32356 * 0.25563 * 12 11 10 23 23 Cl 1.73601 * 119.92702 * 179.97438 * 22 12 11 24 24 C 1.36474 * 120.14791 * 359.97438 * 22 12 11 25 25 H 0.97001 * 120.00145 * 359.97438 * 1 2 3 26 26 H 1.08008 * 120.07637 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.90711 * 179.79575 * 11 10 9 28 28 H 0.96997 * 119.99832 * 145.99755 * 13 12 11 29 29 H 1.09006 * 110.50897 * 335.83368 * 18 16 14 30 30 H 1.09001 * 110.51255 * 98.54229 * 18 16 14 31 31 H 1.08993 * 110.51150 * 118.64007 * 19 18 16 32 32 H 1.08999 * 110.50815 * 241.35297 * 19 18 16 33 33 H 1.08998 * 110.37688 * 142.81510 * 20 19 18 34 34 H 1.09006 * 110.37134 * 265.03569 * 20 19 18 35 35 H 1.07996 * 120.09189 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2126 6 1 1.8840 2.3964 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0844 -1.2137 0.0916 9 6 1.3076 -2.4312 -0.1180 10 6 1.7662 -3.5795 0.5571 11 6 1.0873 -4.7558 0.4340 12 6 -0.0644 -4.8218 -0.3497 13 7 -0.7549 -6.0256 -0.4666 14 6 -0.0806 -7.1925 -0.4623 15 8 1.1322 -7.1921 -0.4626 16 6 -0.8336 -8.4979 -0.4573 17 1 -1.5019 -8.5529 -1.3166 18 6 -1.6323 -8.6530 0.8559 19 6 -1.5223 -10.1583 1.1867 20 6 -0.6707 -10.7346 0.0339 21 8 0.0873 -9.6102 -0.4629 22 6 -0.5280 -3.6875 -1.0180 23 17 -1.9624 -3.7815 -1.9914 24 6 0.1437 -2.5046 -0.9079 25 1 -0.4850 0.8400 0.0004 26 1 2.6556 -3.5293 1.1679 27 1 1.4399 -5.6375 0.9485 28 1 -1.7212 -6.0241 -0.5511 29 1 -1.1840 -8.0539 1.6486 30 1 -2.6741 -8.3703 0.7049 31 1 -1.0196 -10.3034 2.1428 32 1 -2.5097 -10.6196 1.1993 33 1 -0.0004 -11.5087 0.4075 34 1 -1.3140 -11.1363 -0.7490 35 1 -0.2160 -1.6274 -1.4250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334532529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -88.863145 kcal Electronic energy + Delta-G solvation = -20943.918789 eV Core-core repulsion = 17545.496358 eV Total energy + Delta-G solvation = -3398.422432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62492 -40.09614 -38.90149 -37.26697 -36.19235 -34.86324 -33.09823 -31.50317 -31.34057 -30.13267 -27.01891 -24.86144 -23.58168 -22.67901 -22.42106 -21.18793 -19.44074 -18.87091 -18.21931 -17.39621 -17.13492 -16.50720 -16.31316 -16.02032 -15.74394 -15.19893 -14.81522 -14.69169 -14.53814 -14.30922 -14.01733 -13.62710 -13.07119 -12.87669 -12.80452 -12.71926 -12.65602 -12.27072 -12.16844 -12.05670 -11.90172 -11.69827 -11.55372 -11.26621 -11.00701 -10.81481 -10.53311 -9.45456 -8.88264 -8.61381 -6.39218 0.55843 0.89460 1.34165 1.40964 1.42247 1.56173 1.65814 1.95251 2.22838 2.68975 3.08943 3.45833 3.52949 3.67342 3.90642 4.08305 4.22737 4.25652 4.36780 4.64782 4.68719 4.81153 4.84731 4.93299 4.95729 5.02017 5.14316 5.15650 5.25355 5.40173 5.61730 5.75092 5.81726 5.97968 6.17087 6.48220 6.54899 6.81391 6.87290 7.22551 8.35424 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.003786 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.922552 B = 7394.741197 C = 7986.945214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.491 4.491 8 H 0.080 0.920 9 C 0.087 3.913 10 C -0.213 4.213 11 C -0.079 4.079 12 C 0.024 3.976 13 N -0.638 5.638 14 C 0.503 3.497 15 O -0.561 6.561 16 C 0.064 3.936 17 H 0.124 0.876 18 C -0.144 4.144 19 C -0.146 4.146 20 C 0.033 3.967 21 O -0.386 6.386 22 C -0.024 4.024 23 Cl -0.084 7.084 24 C -0.149 4.149 25 H 0.289 0.711 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.415 0.585 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 -13.383 0.811 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.521 4.521 8 H 0.098 0.902 9 C 0.084 3.916 10 C -0.233 4.233 11 C -0.100 4.100 12 C -0.071 4.071 13 N -0.285 5.285 14 C 0.291 3.709 15 O -0.439 6.439 16 C 0.003 3.997 17 H 0.142 0.858 18 C -0.182 4.182 19 C -0.183 4.183 20 C -0.043 4.043 21 O -0.305 6.305 22 C -0.053 4.053 23 Cl -0.055 7.055 24 C -0.170 4.170 25 H 0.100 0.900 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.253 0.747 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.165 -13.302 0.679 15.622 hybrid contribution -0.173 0.909 -0.030 0.926 sum -8.338 -12.392 0.649 14.950 Atomic orbital electron populations 1.69821 1.08627 1.30566 1.36627 1.26717 0.95723 1.04288 0.91303 0.85071 0.79180 0.76082 0.78869 1.18327 1.18979 1.19097 1.19772 0.95352 0.90913 1.46071 0.90186 1.17861 0.91716 0.93188 0.88838 1.21031 1.03439 0.93770 1.05038 1.20330 0.94888 0.97189 0.97560 1.16880 0.99116 0.85126 1.05945 1.42787 1.10632 1.03115 1.71927 1.21091 0.88037 0.85891 0.75833 1.90698 1.16027 1.87689 1.49468 1.22947 0.90389 0.84305 1.02046 0.85831 1.23001 1.01970 0.98575 0.94629 1.22950 1.02480 0.93571 0.99311 1.23782 0.95390 0.88950 0.96196 1.89252 1.35456 1.19008 1.86784 1.20403 0.91369 0.95196 0.98299 1.98249 1.38439 1.98560 1.70282 1.20857 0.98605 0.95317 1.02203 0.90021 0.87317 0.86998 0.74695 0.91831 0.86277 0.90564 0.87005 0.87992 0.89748 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.08 10.95 21.82 0.24 -41.84 16 2 C 0.03 1.66 5.31 85.24 0.45 2.11 16 3 Si 0.99 37.58 29.56 68.60 2.03 39.61 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.49 -25.94 9.03 23.39 0.21 -25.73 16 8 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 9 C 0.09 4.64 5.51 -21.28 -0.12 4.52 16 10 C -0.21 -10.70 9.74 22.48 0.22 -10.48 16 11 C -0.08 -3.77 8.57 22.13 0.19 -3.58 16 12 C 0.02 1.05 6.28 38.58 0.24 1.29 16 13 N -0.64 -21.99 5.01 -303.02 -1.52 -23.50 16 14 C 0.50 17.76 6.79 87.66 0.60 18.36 16 15 O -0.56 -25.71 14.28 15.31 0.22 -25.50 16 16 C 0.06 1.56 3.71 30.35 0.11 1.68 16 17 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 18 C -0.14 -2.50 6.61 31.61 0.21 -2.29 16 19 C -0.15 -1.92 7.09 31.61 0.22 -1.69 16 20 C 0.03 0.54 7.63 72.48 0.55 1.09 16 21 O -0.39 -10.96 10.91 -130.62 -1.43 -12.38 16 22 C -0.02 -1.09 6.30 22.18 0.14 -0.95 16 23 Cl -0.08 -3.06 27.90 -2.72 -0.08 -3.14 16 24 C -0.15 -7.65 8.33 22.50 0.19 -7.46 16 25 H 0.29 13.25 8.30 -92.71 -0.77 12.49 16 26 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 27 H 0.11 5.26 6.46 -2.91 -0.02 5.24 16 28 H 0.42 11.35 8.02 -92.71 -0.74 10.60 16 29 H 0.06 1.37 7.87 -2.38 -0.02 1.35 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.12 6.38 6.45 -2.91 -0.02 6.36 16 Total: -1.00 -67.05 312.67 3.07 -63.98 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.39 Total: 25.92 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 3.22 Total: -23.14 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.28 Total: -65.35 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.21 Total: -37.88 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.08 Total: -3.14 kcal Total: -67.05 3.07 -63.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334532529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.886 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds