Wall clock time and date at job start Tue Mar 31 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46833 * 300.00126 * 3 2 1 6 6 H 1.48497 * 109.46998 * 59.99476 * 3 2 1 7 7 C 1.40047 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99852 * 179.72466 * 7 2 1 9 9 C 1.46376 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99603 * 359.71845 * 9 7 2 11 11 N 1.34777 * 120.00069 * 179.72718 * 9 7 2 12 12 C 1.47416 * 125.64897 * 359.68239 * 11 9 7 13 13 C 1.54693 * 104.94415 * 204.07849 * 12 11 9 14 14 C 1.55156 * 101.67271 * 323.28135 * 13 12 11 15 15 H 1.08999 * 110.71950 * 153.70225 * 14 13 12 16 16 O 1.42900 * 110.72106 * 276.96859 * 14 13 12 17 17 C 1.47016 * 125.64640 * 180.02562 * 11 9 7 18 18 H 1.08995 * 109.88714 * 59.47864 * 17 11 9 19 19 C 1.50707 * 109.88172 * 298.47015 * 17 11 9 20 20 C 1.38247 * 119.98353 * 321.18525 * 19 17 11 21 21 C 1.38217 * 120.01097 * 179.72710 * 20 19 17 22 22 C 1.38353 * 119.98586 * 0.54278 * 21 20 19 23 23 Cl 1.73598 * 120.01606 * 179.75053 * 22 21 20 24 24 C 1.38356 * 119.97087 * 359.72876 * 22 21 20 25 25 C 1.38214 * 119.98971 * 359.97438 * 24 22 21 26 26 H 0.96995 * 120.00002 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.37221 * 323.01031 * 12 11 9 28 28 H 1.09002 * 110.36575 * 85.33346 * 12 11 9 29 29 H 1.09003 * 111.10089 * 205.11434 * 13 12 11 30 30 H 1.08994 * 110.84839 * 81.33731 * 13 12 11 31 31 H 0.96705 * 114.00443 * 293.53085 * 16 14 13 32 32 H 1.07996 * 119.99293 * 359.97438 * 20 19 17 33 33 H 1.07997 * 120.00889 * 180.26898 * 21 20 19 34 34 H 1.08003 * 120.00222 * 179.97438 * 24 22 21 35 35 H 1.08002 * 119.99384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 -0.0040 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0053 11 7 1.9490 -3.6477 -0.0045 12 6 3.4159 -3.7928 -0.0169 13 6 3.6734 -5.1904 -0.6281 14 6 2.4959 -6.0119 -0.0400 15 1 2.2475 -6.8501 -0.6909 16 8 2.8066 -6.4685 1.2780 17 6 1.3428 -4.9871 -0.0057 18 1 0.7127 -5.1081 -0.8868 19 6 0.5201 -5.1784 1.2425 20 6 0.9702 -4.6779 2.4501 21 6 0.2135 -4.8481 3.5941 22 6 -0.9892 -5.5292 3.5327 23 17 -1.9371 -5.7491 4.9703 24 6 -1.4364 -6.0347 2.3248 25 6 -0.6817 -5.8585 1.1804 26 1 -0.4850 0.8400 -0.0004 27 1 3.8686 -3.0183 -0.6361 28 1 3.8103 -3.7468 0.9982 29 1 4.6322 -5.5917 -0.2998 30 1 3.6194 -5.1539 -1.7161 31 1 3.5253 -7.1146 1.3114 32 1 1.9113 -4.1505 2.4987 33 1 0.5631 -4.4534 4.5366 34 1 -2.3750 -6.5668 2.2764 35 1 -1.0305 -6.2534 0.2376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335115992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:44 Heat of formation + Delta-G solvation = -58.308667 kcal Electronic energy + Delta-G solvation = -21895.975188 eV Core-core repulsion = 18498.877698 eV Total energy + Delta-G solvation = -3397.097490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.79125 -38.00144 -36.50524 -36.04767 -34.44645 -32.51621 -31.26055 -30.54341 -29.70627 -27.32543 -26.01018 -22.91459 -22.34120 -21.49137 -20.71539 -18.87154 -17.32842 -16.82189 -16.42889 -15.60642 -15.32160 -14.75834 -14.73039 -14.31960 -13.77747 -13.42101 -13.17355 -13.00476 -12.89770 -12.69759 -12.03133 -11.86702 -11.81207 -11.48119 -11.20944 -11.17674 -10.96885 -10.85122 -10.82299 -10.47664 -10.39525 -10.32179 -10.15860 -9.74375 -8.89065 -8.47105 -8.08583 -7.60633 -7.30250 -6.22405 -4.67641 1.69421 1.87287 2.50111 3.10674 3.18994 3.22950 4.01044 4.13479 4.31532 4.50546 4.58099 4.79612 5.01273 5.19005 5.26769 5.34161 5.44248 5.66474 5.73802 5.82078 5.91136 5.94546 5.97443 6.18300 6.22648 6.36523 6.47272 6.54157 6.68369 6.79124 7.12933 7.26350 7.37098 7.40844 7.77374 8.05797 8.35396 8.99143 9.43089 10.54529 10.73334 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.005941 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.241950 B = 4711.767462 C = 6091.880829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.571 3.429 10 O -0.564 6.564 11 N -0.637 5.637 12 C 0.121 3.879 13 C -0.167 4.167 14 C 0.099 3.901 15 H 0.068 0.932 16 O -0.547 6.547 17 C 0.185 3.815 18 H 0.078 0.922 19 C -0.040 4.040 20 C -0.052 4.052 21 C -0.117 4.117 22 C -0.040 4.040 23 Cl -0.093 7.093 24 C -0.118 4.118 25 C -0.103 4.103 26 H 0.268 0.732 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.371 0.629 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.479 -12.584 2.118 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.378 3.622 10 O -0.445 6.445 11 N -0.377 5.377 12 C -0.003 4.003 13 C -0.205 4.205 14 C 0.040 3.960 15 H 0.086 0.914 16 O -0.351 6.351 17 C 0.080 3.920 18 H 0.095 0.905 19 C -0.041 4.041 20 C -0.071 4.071 21 C -0.135 4.135 22 C -0.067 4.067 23 Cl -0.065 7.065 24 C -0.136 4.136 25 C -0.121 4.121 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.217 0.783 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.994 -11.963 2.395 12.838 hybrid contribution 0.853 0.499 -0.056 0.990 sum 4.847 -11.464 2.339 12.664 Atomic orbital electron populations 1.70026 1.07008 1.27245 1.35088 1.25712 0.94617 1.00255 0.92670 0.86335 0.80486 0.81825 0.78265 1.18754 1.20157 1.20128 1.20898 0.93553 0.88849 1.54195 0.91255 1.18060 0.86785 0.80959 0.76386 1.90644 1.13675 1.85503 1.54677 1.48936 1.04634 1.03547 1.80609 1.21819 0.84042 0.95046 0.99381 1.23474 0.98273 0.97633 1.01119 1.22727 0.94321 0.94947 0.84042 0.91418 1.86679 1.57526 1.63549 1.27370 1.20197 0.92155 0.84977 0.94707 0.90455 1.19947 0.94034 0.94910 0.95259 1.20740 0.98977 0.96430 0.90914 1.20926 0.93644 0.99568 0.99411 1.20748 0.94387 1.04152 0.87373 1.98317 1.72689 1.96277 1.39193 1.20781 1.00204 1.01558 0.91094 1.20811 0.94330 0.99540 0.97466 0.92102 0.91020 0.93210 0.90427 0.90306 0.78303 0.85636 0.85874 0.85838 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.74 11.83 55.55 0.66 -22.08 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.94 29.56 -169.99 -5.02 14.92 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -14.85 8.98 -35.63 -0.32 -15.17 16 8 H 0.07 1.76 6.65 -52.48 -0.35 1.41 16 9 C 0.57 15.83 7.42 -12.99 -0.10 15.73 16 10 O -0.56 -17.86 14.85 5.20 0.08 -17.78 16 11 N -0.64 -13.86 2.33 -166.12 -0.39 -14.25 16 12 C 0.12 2.10 6.50 -2.65 -0.02 2.08 16 13 C -0.17 -2.09 6.80 -24.70 -0.17 -2.26 16 14 C 0.10 1.33 4.17 -24.90 -0.10 1.23 16 15 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 16 O -0.55 -7.03 11.36 -35.23 -0.40 -7.43 16 17 C 0.18 3.44 3.04 -68.11 -0.21 3.23 16 18 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 19 C -0.04 -0.77 3.64 -104.62 -0.38 -1.16 16 20 C -0.05 -1.03 8.08 -39.59 -0.32 -1.35 16 21 C -0.12 -2.14 9.83 -39.55 -0.39 -2.53 16 22 C -0.04 -0.70 6.32 -39.50 -0.25 -0.95 16 23 Cl -0.09 -1.43 28.96 -51.86 -1.50 -2.93 16 24 C -0.12 -1.99 9.83 -39.55 -0.39 -2.38 16 25 C -0.10 -1.83 9.67 -39.59 -0.38 -2.21 16 26 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 27 H 0.07 1.27 7.15 -51.93 -0.37 0.89 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.37 2.90 9.12 45.56 0.42 3.32 16 32 H 0.13 2.58 7.69 -52.49 -0.40 2.18 16 33 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 35 H 0.12 1.88 8.05 -52.49 -0.42 1.46 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -34.58 313.66 -8.19 -42.77 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.22 Total: 5.50 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.12 Total: -3.44 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.27 Total: -36.33 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.32 Total: -25.21 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.58 -8.19 -42.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335115992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.534 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds