Wall clock time and date at job start Tue Mar 31 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46833 * 300.00126 * 3 2 1 6 6 H 1.48497 * 109.46998 * 59.99476 * 3 2 1 7 7 C 1.40047 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99852 * 179.72466 * 7 2 1 9 9 C 1.46376 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99603 * 359.71845 * 9 7 2 11 11 N 1.34777 * 120.00069 * 179.72718 * 9 7 2 12 12 C 1.47416 * 125.64897 * 359.68239 * 11 9 7 13 13 C 1.54693 * 104.94415 * 204.07849 * 12 11 9 14 14 C 1.55156 * 101.67271 * 323.28135 * 13 12 11 15 15 H 1.08999 * 110.71950 * 153.70225 * 14 13 12 16 16 O 1.42900 * 110.72106 * 276.96859 * 14 13 12 17 17 C 1.47016 * 125.64640 * 180.02562 * 11 9 7 18 18 H 1.08995 * 109.88714 * 59.47864 * 17 11 9 19 19 C 1.50707 * 109.88172 * 298.47015 * 17 11 9 20 20 C 1.38247 * 119.98353 * 321.18525 * 19 17 11 21 21 C 1.38217 * 120.01097 * 179.72710 * 20 19 17 22 22 C 1.38353 * 119.98586 * 0.54278 * 21 20 19 23 23 Cl 1.73598 * 120.01606 * 179.75053 * 22 21 20 24 24 C 1.38356 * 119.97087 * 359.72876 * 22 21 20 25 25 C 1.38214 * 119.98971 * 359.97438 * 24 22 21 26 26 H 0.96995 * 120.00002 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.37221 * 323.01031 * 12 11 9 28 28 H 1.09002 * 110.36575 * 85.33346 * 12 11 9 29 29 H 1.09003 * 111.10089 * 205.11434 * 13 12 11 30 30 H 1.08994 * 110.84839 * 81.33731 * 13 12 11 31 31 H 0.96705 * 114.00443 * 293.53085 * 16 14 13 32 32 H 1.07996 * 119.99293 * 359.97438 * 20 19 17 33 33 H 1.07997 * 120.00889 * 180.26898 * 21 20 19 34 34 H 1.08003 * 120.00222 * 179.97438 * 24 22 21 35 35 H 1.08002 * 119.99384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 -0.0040 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0053 11 7 1.9490 -3.6477 -0.0045 12 6 3.4159 -3.7928 -0.0169 13 6 3.6734 -5.1904 -0.6281 14 6 2.4959 -6.0119 -0.0400 15 1 2.2475 -6.8501 -0.6909 16 8 2.8066 -6.4685 1.2780 17 6 1.3428 -4.9871 -0.0057 18 1 0.7127 -5.1081 -0.8868 19 6 0.5201 -5.1784 1.2425 20 6 0.9702 -4.6779 2.4501 21 6 0.2135 -4.8481 3.5941 22 6 -0.9892 -5.5292 3.5327 23 17 -1.9371 -5.7491 4.9703 24 6 -1.4364 -6.0347 2.3248 25 6 -0.6817 -5.8585 1.1804 26 1 -0.4850 0.8400 -0.0004 27 1 3.8686 -3.0183 -0.6361 28 1 3.8103 -3.7468 0.9982 29 1 4.6322 -5.5917 -0.2998 30 1 3.6194 -5.1539 -1.7161 31 1 3.5253 -7.1146 1.3114 32 1 1.9113 -4.1505 2.4987 33 1 0.5631 -4.4534 4.5366 34 1 -2.3750 -6.5668 2.2764 35 1 -1.0305 -6.2534 0.2376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335115992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:44 Heat of formation + Delta-G solvation = -82.349777 kcal Electronic energy + Delta-G solvation = -21897.017688 eV Core-core repulsion = 18498.877698 eV Total energy + Delta-G solvation = -3398.139991 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.20357 -39.41994 -38.20654 -37.34652 -35.88334 -34.60770 -32.65781 -31.93895 -31.21274 -28.83126 -27.87972 -24.41509 -23.75681 -22.89696 -22.11528 -20.51805 -18.72770 -18.29064 -17.90207 -17.53135 -16.61204 -16.34443 -16.07768 -15.87888 -15.33528 -14.84493 -14.74856 -14.38857 -14.31785 -14.09453 -13.65850 -13.46687 -13.17117 -12.95077 -12.83975 -12.75851 -12.47420 -12.38133 -12.28964 -12.05856 -11.96578 -11.72326 -11.57348 -10.94701 -10.76888 -9.89056 -9.84099 -9.41756 -9.05091 -8.28147 -6.82982 0.28687 0.45423 1.15690 1.37671 1.38134 1.55193 2.21716 2.47570 2.67684 2.93147 3.32887 3.62098 3.64565 3.82856 3.91858 3.99341 4.08546 4.23443 4.40018 4.47558 4.60618 4.72541 4.81447 4.89633 4.94689 5.02926 5.09175 5.27840 5.28708 5.33357 5.35676 5.62981 5.71518 5.93804 6.06678 6.43958 6.88531 7.06806 7.51109 8.50057 8.69476 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.005941 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.241950 B = 4711.767462 C = 6091.880829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.031 3.969 3 Si 0.991 3.009 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.559 3.441 10 O -0.618 6.618 11 N -0.641 5.641 12 C 0.111 3.889 13 C -0.148 4.148 14 C 0.115 3.885 15 H 0.103 0.897 16 O -0.563 6.563 17 C 0.170 3.830 18 H 0.065 0.935 19 C -0.055 4.055 20 C -0.072 4.072 21 C -0.127 4.127 22 C -0.049 4.049 23 Cl -0.073 7.073 24 C -0.116 4.116 25 C -0.115 4.115 26 H 0.272 0.728 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.150 -13.730 1.996 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.601 4.601 8 H 0.102 0.898 9 C 0.365 3.635 10 O -0.504 6.504 11 N -0.378 5.378 12 C -0.012 4.012 13 C -0.186 4.186 14 C 0.055 3.945 15 H 0.121 0.879 16 O -0.371 6.371 17 C 0.066 3.934 18 H 0.083 0.917 19 C -0.056 4.056 20 C -0.091 4.091 21 C -0.146 4.146 22 C -0.076 4.076 23 Cl -0.044 7.044 24 C -0.135 4.135 25 C -0.134 4.134 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.108 0.892 31 H 0.245 0.755 32 H 0.126 0.874 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.737 -13.179 2.275 14.552 hybrid contribution 0.318 0.752 0.043 0.818 sum 6.054 -12.427 2.319 14.016 Atomic orbital electron populations 1.70198 1.09388 1.28652 1.36762 1.26906 0.95453 1.04696 0.91369 0.85063 0.79505 0.75866 0.78471 1.16929 1.19276 1.19660 1.21399 0.94447 0.89789 1.54499 0.89806 1.18263 0.86366 0.82886 0.75950 1.90583 1.15837 1.87029 1.56915 1.48607 1.06735 1.03619 1.78872 1.22064 0.81201 0.98197 0.99741 1.23439 0.99807 0.93903 1.01414 1.22579 0.92318 0.94639 0.84929 0.87930 1.86638 1.58920 1.64556 1.27032 1.20505 0.94189 0.84775 0.93948 0.91698 1.20131 0.94880 0.95302 0.95288 1.20673 0.98957 0.97514 0.91955 1.21099 0.94154 0.99841 0.99513 1.20874 0.94338 1.03845 0.88499 1.98318 1.71987 1.96140 1.37989 1.21128 1.00887 1.00906 0.90549 1.21135 0.93920 0.99533 0.98779 0.91773 0.91844 0.93365 0.86493 0.89243 0.75456 0.87447 0.84831 0.83164 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.65 11.83 21.84 0.26 -50.39 16 2 C 0.03 1.72 5.50 85.30 0.47 2.19 16 3 Si 0.99 41.35 29.56 68.60 2.03 43.38 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -32.00 8.98 24.83 0.22 -31.78 16 8 H 0.08 4.31 6.65 -2.91 -0.02 4.29 16 9 C 0.56 32.23 7.42 86.36 0.64 32.87 16 10 O -0.62 -41.13 14.85 -4.32 -0.06 -41.19 16 11 N -0.64 -28.44 2.33 -797.69 -1.86 -30.30 16 12 C 0.11 3.76 6.50 86.78 0.56 4.33 16 13 C -0.15 -3.25 6.80 31.91 0.22 -3.04 16 14 C 0.11 2.78 4.17 31.78 0.13 2.92 16 15 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 16 O -0.56 -13.10 11.36 -148.98 -1.69 -14.80 16 17 C 0.17 6.33 3.04 44.60 0.14 6.47 16 18 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 19 C -0.05 -2.14 3.64 -19.86 -0.07 -2.21 16 20 C -0.07 -2.94 8.08 22.27 0.18 -2.76 16 21 C -0.13 -4.74 9.83 22.29 0.22 -4.52 16 22 C -0.05 -1.69 6.32 22.33 0.14 -1.55 16 23 Cl -0.07 -2.15 28.96 -2.72 -0.08 -2.23 16 24 C -0.12 -3.83 9.83 22.29 0.22 -3.61 16 25 C -0.12 -4.06 9.67 22.26 0.22 -3.85 16 26 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 27 H 0.06 2.22 7.15 -2.39 -0.02 2.20 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.40 4.75 9.12 -74.05 -0.68 4.08 16 32 H 0.11 4.63 7.69 -2.91 -0.02 4.61 16 33 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.14 4.27 8.05 -2.91 -0.02 4.25 16 Total: -1.00 -79.61 313.66 2.33 -77.28 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.45 Total: 22.80 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 3.28 Total: -4.55 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.60 Total: -80.69 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -1.76 Total: -55.99 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -79.61 2.33 -77.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335115992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.070 kcal (2) G-P(sol) polarization free energy of solvation -79.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds