Wall clock time and date at job start Tue Mar 31 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48502 * 109.47080 * 239.99662 * 3 2 1 5 5 H 1.48494 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46717 * 119.99986 * 3 2 1 7 7 C 1.39955 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99857 * 194.97946 * 7 2 1 9 9 C 1.41071 * 119.99829 * 14.98057 * 7 2 1 10 10 C 1.40732 * 120.29373 * 31.79271 * 9 7 2 11 11 C 1.37550 * 119.81164 * 179.72860 * 10 9 7 12 12 Cl 1.73596 * 119.79100 * 180.02562 * 11 10 9 13 13 C 1.38999 * 120.41728 * 0.02562 * 11 10 9 14 14 C 1.38191 * 120.60583 * 359.97438 * 13 11 10 15 15 C 1.38601 * 120.17108 * 359.97438 * 14 13 11 16 16 N 1.39156 * 120.21364 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99200 * 21.09734 * 16 15 14 18 18 O 1.21277 * 120.00562 * 5.15862 * 17 16 15 19 19 C 1.50700 * 119.99544 * 185.15475 * 17 16 15 20 20 H 1.09002 * 110.75118 * 62.01716 * 19 17 16 21 21 C 1.55305 * 110.85050 * 185.71863 * 19 17 16 22 22 C 1.54942 * 100.94328 * 152.32623 * 21 19 17 23 23 O 1.43643 * 105.13708 * 323.55357 * 22 21 19 24 24 C 1.43239 * 109.96906 * 24.42971 * 23 22 21 25 25 H 0.96999 * 119.99637 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.09689 * 359.74550 * 10 9 7 27 27 H 1.08001 * 119.69610 * 179.97438 * 13 11 10 28 28 H 1.08003 * 119.91111 * 180.02562 * 14 13 11 29 29 H 0.96994 * 120.00574 * 201.09765 * 16 15 14 30 30 H 1.09003 * 111.11960 * 270.24563 * 21 19 17 31 31 H 1.09002 * 111.12193 * 34.39908 * 21 19 17 32 32 H 1.08998 * 110.30515 * 204.63764 * 22 21 19 33 33 H 1.08996 * 110.31248 * 82.47292 * 22 21 19 34 34 H 1.09004 * 109.83249 * 238.77274 * 24 23 22 35 35 H 1.09000 * 109.83024 * 117.80723 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0963 1.6963 1.2126 7 6 2.0083 -1.2121 0.0005 8 1 3.0607 -1.2278 0.2423 9 6 1.3389 -2.4131 -0.3147 10 6 0.2661 -2.4099 -1.2256 11 6 -0.3761 -3.5876 -1.5301 12 17 -1.6989 -3.5831 -2.6542 13 6 0.0276 -4.7813 -0.9433 14 6 1.0788 -4.8044 -0.0467 15 6 1.7441 -3.6323 0.2771 16 7 2.8024 -3.6545 1.1803 17 6 3.4611 -4.8060 1.4184 18 8 3.1940 -5.8009 0.7782 19 6 4.5294 -4.8574 2.4800 20 1 4.1097 -4.6357 3.4613 21 6 5.2446 -6.2359 2.4783 22 6 6.6386 -5.8448 3.0302 23 8 6.9119 -4.5488 2.4743 24 6 5.6840 -3.8889 2.1449 25 1 -0.4849 0.8401 -0.0004 26 1 -0.0520 -1.4854 -1.6844 27 1 -0.4851 -5.6991 -1.1905 28 1 1.3834 -5.7383 0.4022 29 1 3.0662 -2.8413 1.6385 30 1 4.7425 -6.9397 3.1422 31 1 5.3206 -6.6378 1.4679 32 1 7.3902 -6.5631 2.7028 33 1 6.6134 -5.7920 4.1186 34 1 5.6675 -3.6475 1.0821 35 1 5.5847 -2.9771 2.7338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335192989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:51 Heat of formation + Delta-G solvation = -74.377911 kcal Electronic energy + Delta-G solvation = -21203.849885 eV Core-core repulsion = 17806.055580 eV Total energy + Delta-G solvation = -3397.794305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35625 -38.79773 -37.30789 -35.51467 -33.90831 -33.70081 -32.29358 -29.93808 -29.65873 -28.07401 -25.49798 -23.55329 -22.48950 -21.64952 -20.67451 -19.44886 -17.72537 -17.27789 -16.78365 -16.22108 -15.75419 -15.24693 -14.90025 -14.64429 -14.27263 -13.81353 -13.42679 -13.21477 -13.03582 -12.72224 -12.33760 -11.94097 -11.79658 -11.57705 -11.52753 -11.40937 -11.29771 -11.02536 -10.94292 -10.60031 -10.52939 -10.33854 -9.76289 -9.63929 -9.40189 -9.32504 -8.86452 -7.63995 -7.09133 -6.81674 -4.59502 2.28535 2.66698 2.97367 2.97737 3.05387 3.16827 3.27276 3.57074 3.78200 3.87642 4.26608 4.42315 4.83482 4.85833 5.04928 5.12832 5.27647 5.34952 5.59108 5.63007 5.71106 5.82571 6.08631 6.22110 6.31078 6.63704 6.74078 6.83379 6.91274 6.95419 7.27120 7.40422 7.63957 7.68251 7.84739 8.15046 8.28866 8.55051 8.62450 8.76900 10.01377 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.005536 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.501411 B = 5056.257690 C = 7075.095529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.080 3.920 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.473 4.473 8 H 0.080 0.920 9 C 0.111 3.889 10 C -0.137 4.137 11 C -0.015 4.015 12 Cl -0.123 7.123 13 C -0.212 4.212 14 C -0.093 4.093 15 C 0.026 3.974 16 N -0.632 5.632 17 C 0.507 3.493 18 O -0.532 6.532 19 C -0.146 4.146 20 H 0.110 0.890 21 C -0.134 4.134 22 C 0.050 3.950 23 O -0.382 6.382 24 C 0.061 3.939 25 H 0.285 0.715 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.407 0.593 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 -4.000 5.602 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.502 4.502 8 H 0.098 0.902 9 C 0.107 3.893 10 C -0.157 4.157 11 C -0.042 4.042 12 Cl -0.095 7.095 13 C -0.232 4.232 14 C -0.113 4.113 15 C -0.069 4.069 16 N -0.273 5.273 17 C 0.294 3.706 18 O -0.411 6.411 19 C -0.167 4.167 20 H 0.128 0.872 21 C -0.172 4.172 22 C -0.026 4.026 23 O -0.302 6.302 24 C -0.016 4.016 25 H 0.096 0.904 26 H 0.144 0.856 27 H 0.121 0.879 28 H 0.151 0.849 29 H 0.243 0.757 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.433 -4.443 5.076 9.321 hybrid contribution -0.064 1.229 0.213 1.249 sum 6.369 -3.214 5.289 8.881 Atomic orbital electron populations 1.69782 1.07494 1.29880 1.34068 1.25859 0.94773 1.01230 0.92124 0.86345 0.80121 0.80150 0.80081 1.18713 1.20198 1.18901 1.19220 0.96884 0.90647 1.43454 0.90202 1.17177 0.92016 0.90885 0.89209 1.20926 0.99137 0.95515 1.00164 1.20767 0.91716 0.95904 0.95829 1.98257 1.49408 1.99048 1.62810 1.20205 1.02397 0.95470 1.05133 1.20911 0.94492 0.97624 0.98278 1.17880 0.94502 0.95519 0.98977 1.42981 1.31349 1.11206 1.41788 1.20095 0.82500 0.83769 0.84276 1.90596 1.65995 1.35085 1.49374 1.22917 0.95852 0.98012 0.99940 0.87157 1.23142 0.94377 0.95658 1.04015 1.23426 0.96653 0.84873 0.97695 1.88402 1.28716 1.30008 1.83046 1.23128 0.82069 0.94871 1.01575 0.90378 0.85575 0.87868 0.84938 0.75664 0.89465 0.88851 0.89530 0.92089 0.90448 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.89 11.29 55.55 0.63 -18.27 16 2 C 0.08 1.81 5.15 -17.32 -0.09 1.72 16 3 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.47 -11.02 8.23 -37.87 -0.31 -11.34 16 8 H 0.08 1.73 7.29 -52.49 -0.38 1.34 16 9 C 0.11 2.70 5.50 -106.66 -0.59 2.12 16 10 C -0.14 -3.37 8.41 -38.89 -0.33 -3.70 16 11 C -0.02 -0.36 6.31 -39.55 -0.25 -0.61 16 12 Cl -0.12 -2.52 28.94 -51.86 -1.50 -4.02 16 13 C -0.21 -4.75 9.82 -39.32 -0.39 -5.14 16 14 C -0.09 -2.11 8.75 -39.46 -0.35 -2.45 16 15 C 0.03 0.58 6.51 -83.18 -0.54 0.04 16 16 N -0.63 -11.81 5.12 -9.48 -0.05 -11.86 16 17 C 0.51 8.73 6.86 -10.98 -0.08 8.66 16 18 O -0.53 -10.80 12.71 5.56 0.07 -10.73 16 19 C -0.15 -1.84 3.40 -89.83 -0.31 -2.15 16 20 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 21 C -0.13 -1.54 6.23 -24.48 -0.15 -1.69 16 22 C 0.05 0.51 7.78 38.18 0.30 0.81 16 23 O -0.38 -5.02 11.36 -35.23 -0.40 -5.42 16 24 C 0.06 0.75 7.29 37.88 0.28 1.03 16 25 H 0.29 6.30 8.30 -40.82 -0.34 5.97 16 26 H 0.13 3.22 6.61 -52.49 -0.35 2.88 16 27 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.13 2.96 5.49 -52.48 -0.29 2.67 16 29 H 0.41 6.82 7.43 -40.82 -0.30 6.52 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.24 7.47 -51.93 -0.39 0.85 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.06 7.81 -51.93 -0.41 0.65 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -27.24 309.70 -8.20 -35.43 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -3.78 Total: 10.80 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.80 Total: -12.70 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.58 Total: -30.13 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.33 Total: -16.15 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -1.50 Total: -4.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.24 -8.20 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335192989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.945 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds