Wall clock time and date at job start Tue Mar 31 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48502 * 109.47080 * 239.99662 * 3 2 1 5 5 H 1.48494 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46717 * 119.99986 * 3 2 1 7 7 C 1.39955 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99857 * 194.97946 * 7 2 1 9 9 C 1.41071 * 119.99829 * 14.98057 * 7 2 1 10 10 C 1.40732 * 120.29373 * 31.79271 * 9 7 2 11 11 C 1.37550 * 119.81164 * 179.72860 * 10 9 7 12 12 Cl 1.73596 * 119.79100 * 180.02562 * 11 10 9 13 13 C 1.38999 * 120.41728 * 0.02562 * 11 10 9 14 14 C 1.38191 * 120.60583 * 359.97438 * 13 11 10 15 15 C 1.38601 * 120.17108 * 359.97438 * 14 13 11 16 16 N 1.39156 * 120.21364 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99200 * 21.09734 * 16 15 14 18 18 O 1.21277 * 120.00562 * 5.15862 * 17 16 15 19 19 C 1.50700 * 119.99544 * 185.15475 * 17 16 15 20 20 H 1.09002 * 110.75118 * 62.01716 * 19 17 16 21 21 C 1.55305 * 110.85050 * 185.71863 * 19 17 16 22 22 C 1.54942 * 100.94328 * 152.32623 * 21 19 17 23 23 O 1.43643 * 105.13708 * 323.55357 * 22 21 19 24 24 C 1.43239 * 109.96906 * 24.42971 * 23 22 21 25 25 H 0.96999 * 119.99637 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.09689 * 359.74550 * 10 9 7 27 27 H 1.08001 * 119.69610 * 179.97438 * 13 11 10 28 28 H 1.08003 * 119.91111 * 180.02562 * 14 13 11 29 29 H 0.96994 * 120.00574 * 201.09765 * 16 15 14 30 30 H 1.09003 * 111.11960 * 270.24563 * 21 19 17 31 31 H 1.09002 * 111.12193 * 34.39908 * 21 19 17 32 32 H 1.08998 * 110.30515 * 204.63764 * 22 21 19 33 33 H 1.08996 * 110.31248 * 82.47292 * 22 21 19 34 34 H 1.09004 * 109.83249 * 238.77274 * 24 23 22 35 35 H 1.09000 * 109.83024 * 117.80723 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0963 1.6963 1.2126 7 6 2.0083 -1.2121 0.0005 8 1 3.0607 -1.2278 0.2423 9 6 1.3389 -2.4131 -0.3147 10 6 0.2661 -2.4099 -1.2256 11 6 -0.3761 -3.5876 -1.5301 12 17 -1.6989 -3.5831 -2.6542 13 6 0.0276 -4.7813 -0.9433 14 6 1.0788 -4.8044 -0.0467 15 6 1.7441 -3.6323 0.2771 16 7 2.8024 -3.6545 1.1803 17 6 3.4611 -4.8060 1.4184 18 8 3.1940 -5.8009 0.7782 19 6 4.5294 -4.8574 2.4800 20 1 4.1097 -4.6357 3.4613 21 6 5.2446 -6.2359 2.4783 22 6 6.6386 -5.8448 3.0302 23 8 6.9119 -4.5488 2.4743 24 6 5.6840 -3.8889 2.1449 25 1 -0.4849 0.8401 -0.0004 26 1 -0.0520 -1.4854 -1.6844 27 1 -0.4851 -5.6991 -1.1905 28 1 1.3834 -5.7383 0.4022 29 1 3.0662 -2.8413 1.6385 30 1 4.7425 -6.9397 3.1422 31 1 5.3206 -6.6378 1.4679 32 1 7.3902 -6.5631 2.7028 33 1 6.6134 -5.7920 4.1186 34 1 5.6675 -3.6475 1.0821 35 1 5.5847 -2.9771 2.7338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335192989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:50 Heat of formation + Delta-G solvation = -89.901979 kcal Electronic energy + Delta-G solvation = -21204.523059 eV Core-core repulsion = 17806.055580 eV Total energy + Delta-G solvation = -3398.467479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68700 -40.04922 -38.87839 -37.21453 -35.56585 -35.36315 -33.36120 -31.69140 -30.79303 -29.58133 -27.24369 -24.82557 -23.62853 -23.15554 -22.19682 -20.87282 -19.37775 -18.71698 -17.98336 -17.57066 -17.23770 -16.58543 -16.32166 -15.99596 -15.55337 -15.31778 -14.80001 -14.60702 -14.41677 -14.21166 -14.03280 -13.47551 -13.26895 -13.07147 -12.84942 -12.66599 -12.45668 -12.35914 -12.23254 -12.17044 -11.97312 -11.92427 -11.44427 -11.06516 -10.97180 -10.62318 -10.36763 -9.45985 -8.81942 -8.53341 -6.38812 0.59668 0.91050 1.43413 1.49769 1.53332 1.54862 1.68994 2.20634 2.26787 2.69161 2.89815 3.27370 3.54670 3.76698 3.90528 4.13597 4.18769 4.32005 4.47735 4.53251 4.71060 4.77922 4.86109 4.91900 4.94629 4.98162 5.15530 5.20758 5.22304 5.51458 5.64678 5.85856 5.91513 5.95297 6.10174 6.43330 6.66605 6.81632 6.89727 7.28307 8.31987 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.005536 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.501411 B = 5056.257690 C = 7075.095529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.043 3.957 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.250 1.250 7 C -0.489 4.489 8 H 0.092 0.908 9 C 0.086 3.914 10 C -0.159 4.159 11 C -0.025 4.025 12 Cl -0.103 7.103 13 C -0.215 4.215 14 C -0.105 4.105 15 C 0.025 3.975 16 N -0.632 5.632 17 C 0.508 3.492 18 O -0.564 6.564 19 C -0.136 4.136 20 H 0.141 0.859 21 C -0.133 4.133 22 C 0.051 3.949 23 O -0.401 6.401 24 C 0.062 3.938 25 H 0.290 0.710 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.136 0.864 29 H 0.416 0.584 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.107 -3.774 7.146 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.174 4.174 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.518 4.518 8 H 0.110 0.890 9 C 0.082 3.918 10 C -0.180 4.180 11 C -0.052 4.052 12 Cl -0.075 7.075 13 C -0.236 4.236 14 C -0.125 4.125 15 C -0.070 4.070 16 N -0.274 5.274 17 C 0.297 3.703 18 O -0.444 6.444 19 C -0.157 4.157 20 H 0.159 0.841 21 C -0.171 4.171 22 C -0.025 4.025 23 O -0.321 6.321 24 C -0.014 4.014 25 H 0.100 0.900 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.154 0.846 29 H 0.254 0.746 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.827 -4.229 6.640 11.101 hybrid contribution -0.509 1.057 -0.290 1.209 sum 7.318 -3.171 6.350 10.195 Atomic orbital electron populations 1.69855 1.09031 1.30930 1.34824 1.26661 0.95325 1.04231 0.91147 0.85305 0.78750 0.75838 0.80284 1.19026 1.20030 1.17336 1.19503 0.97474 0.90945 1.43910 0.89009 1.17500 0.92517 0.92054 0.89733 1.20884 1.00446 0.95380 1.01262 1.20854 0.92308 0.95695 0.96342 1.98248 1.48251 1.99024 1.61962 1.20439 1.02386 0.95900 1.04858 1.21077 0.94835 0.97860 0.98734 1.18021 0.95090 0.94940 0.98988 1.43020 1.30731 1.12341 1.41283 1.20911 0.82538 0.82526 0.84372 1.90573 1.67062 1.36065 1.50690 1.22956 0.94351 0.99138 0.99286 0.84092 1.23156 0.95419 0.95267 1.03279 1.23609 0.95966 0.83915 0.99002 1.88385 1.28977 1.31245 1.83464 1.23117 0.81796 0.95590 1.00945 0.89980 0.87264 0.86209 0.84647 0.74595 0.87650 0.91249 0.88230 0.89547 0.92395 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.88 11.29 21.83 0.25 -39.63 16 2 C 0.04 1.94 5.15 85.25 0.44 2.38 16 3 Si 0.98 34.45 29.59 68.60 2.03 36.48 16 4 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.28 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 7 C -0.49 -22.88 8.23 23.38 0.19 -22.68 16 8 H 0.09 3.92 7.29 -2.91 -0.02 3.90 16 9 C 0.09 4.26 5.50 -21.18 -0.12 4.14 16 10 C -0.16 -8.03 8.41 22.72 0.19 -7.84 16 11 C -0.03 -1.17 6.31 22.29 0.14 -1.03 16 12 Cl -0.10 -4.20 28.94 -2.72 -0.08 -4.28 16 13 C -0.22 -9.73 9.82 22.44 0.22 -9.51 16 14 C -0.10 -4.79 8.75 22.35 0.20 -4.59 16 15 C 0.02 1.14 6.51 38.86 0.25 1.39 16 16 N -0.63 -23.27 5.12 -302.30 -1.55 -24.82 16 17 C 0.51 17.04 6.86 87.66 0.60 17.64 16 18 O -0.56 -22.79 12.71 -3.02 -0.04 -22.83 16 19 C -0.14 -3.13 3.40 -10.28 -0.03 -3.17 16 20 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 21 C -0.13 -2.77 6.23 32.05 0.20 -2.57 16 22 C 0.05 0.89 7.78 72.65 0.56 1.45 16 23 O -0.40 -9.57 11.36 -148.98 -1.69 -11.26 16 24 C 0.06 1.43 7.29 72.45 0.53 1.95 16 25 H 0.29 12.92 8.30 -92.71 -0.77 12.16 16 26 H 0.11 5.79 6.61 -2.91 -0.02 5.77 16 27 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 28 H 0.14 6.08 5.49 -2.91 -0.02 6.07 16 29 H 0.42 13.54 7.43 -92.71 -0.69 12.85 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.79 7.47 -2.39 -0.02 1.77 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.53 7.81 -2.38 -0.02 1.52 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -59.07 309.70 2.74 -56.33 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.45 Total: 32.45 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 3.37 Total: -22.44 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -1.30 Total: -64.45 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.73 Total: -34.09 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Atomic # 17 Polarization: -4.20 SS G_CDS: -0.08 Total: -4.28 kcal Total: -59.07 2.74 -56.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335192989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.571 kcal (2) G-P(sol) polarization free energy of solvation -59.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds