Wall clock time and date at job start Tue Mar 31 2020 06:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86801 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46815 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47338 * 299.99132 * 3 2 1 6 6 H 1.48499 * 109.47468 * 60.00021 * 3 2 1 7 7 C 1.39947 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00032 * 192.18417 * 7 2 1 9 9 C 1.41066 * 120.00185 * 12.18923 * 7 2 1 10 10 C 1.40743 * 120.29376 * 27.94863 * 9 7 2 11 11 C 1.37540 * 119.81503 * 179.97438 * 10 9 7 12 12 Cl 1.73593 * 119.79199 * 180.02562 * 11 10 9 13 13 C 1.39006 * 120.41768 * 359.97438 * 11 10 9 14 14 C 1.38187 * 120.60530 * 0.02562 * 13 11 10 15 15 C 1.38608 * 120.17276 * 0.25496 * 14 13 11 16 16 N 1.39143 * 120.21466 * 179.74768 * 15 14 13 17 17 C 1.34778 * 120.00083 * 28.64743 * 16 15 14 18 18 O 1.21290 * 119.99887 * 355.56615 * 17 16 15 19 19 C 1.50697 * 120.00297 * 175.56684 * 17 16 15 20 20 H 1.09007 * 110.45793 * 302.60933 * 19 17 16 21 21 C 1.54513 * 110.51532 * 180.02562 * 19 17 16 22 22 C 1.54479 * 104.06289 * 241.35471 * 21 19 17 23 23 O 1.44428 * 104.80296 * 23.97818 * 22 21 19 24 24 C 1.44432 * 105.27407 * 319.48812 * 23 22 21 25 25 H 0.96993 * 119.99864 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.09093 * 0.03124 * 10 9 7 27 27 H 1.07997 * 119.69497 * 179.97438 * 13 11 10 28 28 H 1.08002 * 119.91685 * 179.97438 * 14 13 11 29 29 H 0.97003 * 120.00439 * 208.65118 * 16 15 14 30 30 H 1.08997 * 110.50732 * 359.97438 * 21 19 17 31 31 H 1.08993 * 110.51268 * 122.57334 * 21 19 17 32 32 H 1.08998 * 110.37264 * 142.80106 * 22 21 19 33 33 H 1.08998 * 110.36959 * 265.14772 * 22 21 19 34 34 H 1.09002 * 110.36872 * 281.67887 * 24 23 22 35 35 H 1.09005 * 110.37238 * 159.34811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8837 2.3965 1.2125 7 6 2.0083 -1.2120 0.0005 8 1 3.0701 -1.2224 0.1979 9 6 1.3269 -2.4200 -0.2569 10 6 0.1689 -2.4254 -1.0567 11 6 -0.4875 -3.6090 -1.3018 12 17 -1.9154 -3.6150 -2.2890 13 6 -0.0141 -4.8005 -0.7648 14 6 1.1212 -4.8153 0.0229 15 6 1.7987 -3.6361 0.2905 16 7 2.9390 -3.6491 1.0879 17 6 3.7175 -4.7484 1.1325 18 8 3.3823 -5.7533 0.5419 19 6 5.0045 -4.7290 1.9163 20 1 5.6560 -3.9313 1.5594 21 6 5.7189 -6.0955 1.8182 22 6 5.7784 -6.5937 3.2793 23 8 4.6955 -5.9098 3.9468 24 6 4.7169 -4.5632 3.4250 25 1 -0.4849 0.8400 -0.0004 26 1 -0.2028 -1.5028 -1.4777 27 1 -0.5389 -5.7231 -0.9644 28 1 1.4790 -5.7473 0.4348 29 1 3.1736 -2.8671 1.6117 30 1 5.1410 -6.7853 1.2031 31 1 6.7233 -5.9732 1.4130 32 1 5.6274 -7.6725 3.3188 33 1 6.7329 -6.3263 3.7327 34 1 5.5086 -3.9845 3.9009 35 1 3.7506 -4.0821 3.5766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335193010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:53 Heat of formation + Delta-G solvation = -73.349669 kcal Electronic energy + Delta-G solvation = -21272.444259 eV Core-core repulsion = 17874.694543 eV Total energy + Delta-G solvation = -3397.749717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34712 -38.67428 -37.21960 -35.47316 -33.91078 -33.65523 -32.18966 -29.88863 -29.52905 -28.01179 -25.49435 -23.68985 -22.53048 -21.51456 -20.54701 -19.32194 -17.68271 -17.25453 -16.59450 -16.09267 -15.90810 -15.36333 -14.98395 -14.63179 -14.28901 -13.87218 -13.31717 -13.04000 -12.81919 -12.56248 -12.22810 -11.90958 -11.72345 -11.52056 -11.49789 -11.36583 -11.29484 -10.93594 -10.89675 -10.55006 -10.47258 -10.29276 -9.93166 -9.69568 -9.40525 -9.21827 -8.82873 -7.61096 -7.09194 -6.79599 -4.58570 2.35320 2.69026 2.96664 2.99856 3.04653 3.19358 3.31572 3.73033 3.77435 3.93749 4.42741 4.43501 4.81898 4.94980 5.05650 5.17071 5.36090 5.45904 5.52064 5.63015 5.65878 5.80695 6.16568 6.27943 6.36572 6.66997 6.72637 6.79364 6.97743 6.98822 7.29652 7.48344 7.68081 7.76768 7.88712 8.20032 8.31905 8.59340 8.64562 8.84287 10.01191 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.005524 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.631269 B = 5067.191129 C = 6928.876803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.464 4.464 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.140 4.140 11 C -0.015 4.015 12 Cl -0.124 7.124 13 C -0.215 4.215 14 C -0.085 4.085 15 C 0.021 3.979 16 N -0.635 5.635 17 C 0.508 3.492 18 O -0.533 6.533 19 C -0.145 4.145 20 H 0.110 0.890 21 C -0.146 4.146 22 C 0.046 3.954 23 O -0.371 6.371 24 C 0.055 3.945 25 H 0.284 0.716 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.405 0.595 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.893 -3.053 4.414 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.493 4.493 8 H 0.098 0.902 9 C 0.103 3.897 10 C -0.161 4.161 11 C -0.041 4.041 12 Cl -0.096 7.096 13 C -0.236 4.236 14 C -0.105 4.105 15 C -0.073 4.073 16 N -0.276 5.276 17 C 0.295 3.705 18 O -0.410 6.410 19 C -0.167 4.167 20 H 0.128 0.872 21 C -0.184 4.184 22 C -0.031 4.031 23 O -0.290 6.290 24 C -0.023 4.023 25 H 0.095 0.905 26 H 0.153 0.847 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.241 0.759 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.215 -3.677 4.095 9.888 hybrid contribution 0.440 1.426 -0.058 1.493 sum 8.655 -2.252 4.037 9.812 Atomic orbital electron populations 1.69788 1.07464 1.29540 1.34496 1.25903 0.94840 1.01364 0.92215 0.86204 0.80669 0.80777 0.78790 1.18438 1.19589 1.19839 1.19333 0.96109 0.90309 1.43569 0.90199 1.17263 0.92129 0.91026 0.89254 1.21096 0.97875 0.95752 1.01375 1.20784 0.89259 0.95877 0.98203 1.98254 1.41543 1.99053 1.70746 1.20205 1.00403 0.95467 1.07518 1.20824 0.93597 0.97433 0.98637 1.17815 0.91920 0.95260 1.02321 1.42860 1.23959 1.16219 1.44597 1.20200 0.84976 0.83671 0.81696 1.90583 1.72613 1.32205 1.45648 1.22707 0.96283 1.00761 0.96975 0.87202 1.22986 1.01168 0.95992 0.98260 1.23437 0.90316 0.98224 0.91112 1.89162 1.52252 1.22849 1.64694 1.23427 1.03034 0.85618 0.90180 0.90506 0.84746 0.87947 0.85339 0.75937 0.88034 0.90242 0.89000 0.92392 0.91176 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.92 10.86 55.55 0.60 -18.32 16 2 C 0.08 1.72 5.23 -17.33 -0.09 1.63 16 3 Si 0.91 17.04 29.58 -169.99 -5.03 12.01 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.46 -10.87 8.34 -37.87 -0.32 -11.19 16 8 H 0.08 1.74 7.28 -52.49 -0.38 1.36 16 9 C 0.11 2.64 5.57 -106.65 -0.59 2.05 16 10 C -0.14 -3.50 8.42 -38.89 -0.33 -3.83 16 11 C -0.01 -0.34 6.31 -39.55 -0.25 -0.59 16 12 Cl -0.12 -2.57 28.94 -51.86 -1.50 -4.07 16 13 C -0.22 -4.94 9.82 -39.32 -0.39 -5.33 16 14 C -0.08 -1.97 8.74 -39.46 -0.34 -2.31 16 15 C 0.02 0.48 6.44 -83.18 -0.54 -0.05 16 16 N -0.63 -12.08 4.84 -9.48 -0.05 -12.12 16 17 C 0.51 9.06 6.94 -10.99 -0.08 8.98 16 18 O -0.53 -11.22 12.34 5.55 0.07 -11.15 16 19 C -0.15 -1.87 3.51 -90.21 -0.32 -2.19 16 20 H 0.11 1.16 8.14 -51.92 -0.42 0.73 16 21 C -0.15 -1.72 6.67 -25.16 -0.17 -1.89 16 22 C 0.05 0.50 7.63 37.93 0.29 0.79 16 23 O -0.37 -5.19 11.65 -35.23 -0.41 -5.60 16 24 C 0.05 0.65 7.17 37.93 0.27 0.93 16 25 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 26 H 0.13 3.48 6.21 -52.48 -0.33 3.15 16 27 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.13 2.98 5.72 -52.49 -0.30 2.68 16 29 H 0.40 6.79 7.68 -40.82 -0.31 6.48 16 30 H 0.10 1.45 6.50 -51.93 -0.34 1.11 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.21 7.66 -51.93 -0.40 0.81 16 LS Contribution 308.43 15.07 4.65 4.65 Total: -1.00 -28.05 308.43 -8.24 -36.28 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -3.73 Total: 11.32 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.84 Total: -13.00 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.56 Total: -30.44 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.34 Total: -16.76 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -1.50 Total: -4.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.05 -8.24 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335193010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.068 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds