Wall clock time and date at job start Tue Mar 31 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86801 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46815 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47338 * 299.99132 * 3 2 1 6 6 H 1.48499 * 109.47468 * 60.00021 * 3 2 1 7 7 C 1.39947 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00032 * 192.18417 * 7 2 1 9 9 C 1.41066 * 120.00185 * 12.18923 * 7 2 1 10 10 C 1.40743 * 120.29376 * 27.94863 * 9 7 2 11 11 C 1.37540 * 119.81503 * 179.97438 * 10 9 7 12 12 Cl 1.73593 * 119.79199 * 180.02562 * 11 10 9 13 13 C 1.39006 * 120.41768 * 359.97438 * 11 10 9 14 14 C 1.38187 * 120.60530 * 0.02562 * 13 11 10 15 15 C 1.38608 * 120.17276 * 0.25496 * 14 13 11 16 16 N 1.39143 * 120.21466 * 179.74768 * 15 14 13 17 17 C 1.34778 * 120.00083 * 28.64743 * 16 15 14 18 18 O 1.21290 * 119.99887 * 355.56615 * 17 16 15 19 19 C 1.50697 * 120.00297 * 175.56684 * 17 16 15 20 20 H 1.09007 * 110.45793 * 302.60933 * 19 17 16 21 21 C 1.54513 * 110.51532 * 180.02562 * 19 17 16 22 22 C 1.54479 * 104.06289 * 241.35471 * 21 19 17 23 23 O 1.44428 * 104.80296 * 23.97818 * 22 21 19 24 24 C 1.44432 * 105.27407 * 319.48812 * 23 22 21 25 25 H 0.96993 * 119.99864 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.09093 * 0.03124 * 10 9 7 27 27 H 1.07997 * 119.69497 * 179.97438 * 13 11 10 28 28 H 1.08002 * 119.91685 * 179.97438 * 14 13 11 29 29 H 0.97003 * 120.00439 * 208.65118 * 16 15 14 30 30 H 1.08997 * 110.50732 * 359.97438 * 21 19 17 31 31 H 1.08993 * 110.51268 * 122.57334 * 21 19 17 32 32 H 1.08998 * 110.37264 * 142.80106 * 22 21 19 33 33 H 1.08998 * 110.36959 * 265.14772 * 22 21 19 34 34 H 1.09002 * 110.36872 * 281.67887 * 24 23 22 35 35 H 1.09005 * 110.37238 * 159.34811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8837 2.3965 1.2125 7 6 2.0083 -1.2120 0.0005 8 1 3.0701 -1.2224 0.1979 9 6 1.3269 -2.4200 -0.2569 10 6 0.1689 -2.4254 -1.0567 11 6 -0.4875 -3.6090 -1.3018 12 17 -1.9154 -3.6150 -2.2890 13 6 -0.0141 -4.8005 -0.7648 14 6 1.1212 -4.8153 0.0229 15 6 1.7987 -3.6361 0.2905 16 7 2.9390 -3.6491 1.0879 17 6 3.7175 -4.7484 1.1325 18 8 3.3823 -5.7533 0.5419 19 6 5.0045 -4.7290 1.9163 20 1 5.6560 -3.9313 1.5594 21 6 5.7189 -6.0955 1.8182 22 6 5.7784 -6.5937 3.2793 23 8 4.6955 -5.9098 3.9468 24 6 4.7169 -4.5632 3.4250 25 1 -0.4849 0.8400 -0.0004 26 1 -0.2028 -1.5028 -1.4777 27 1 -0.5389 -5.7231 -0.9644 28 1 1.4790 -5.7473 0.4348 29 1 3.1736 -2.8671 1.6117 30 1 5.1410 -6.7853 1.2031 31 1 6.7233 -5.9732 1.4130 32 1 5.6274 -7.6725 3.3188 33 1 6.7329 -6.3263 3.7327 34 1 5.5086 -3.9845 3.9009 35 1 3.7506 -4.0821 3.5766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335193010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:52 Heat of formation + Delta-G solvation = -89.837420 kcal Electronic energy + Delta-G solvation = -21273.159222 eV Core-core repulsion = 17874.694543 eV Total energy + Delta-G solvation = -3398.464679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67241 -39.98808 -38.78755 -37.20312 -35.60008 -35.32972 -33.26084 -31.66006 -30.70848 -29.50365 -27.25581 -24.87105 -23.78243 -23.09375 -22.06115 -20.73696 -19.37081 -18.69353 -17.92866 -17.36604 -17.23880 -16.71272 -16.34173 -15.97446 -15.77805 -15.30095 -14.86138 -14.66650 -14.37543 -14.03435 -13.61786 -13.43907 -13.21327 -12.91825 -12.84302 -12.60599 -12.41228 -12.29402 -12.25814 -12.14303 -11.93053 -11.84694 -11.43519 -11.10647 -10.99167 -10.73483 -10.36203 -9.46000 -8.83960 -8.53117 -6.39215 0.62474 0.92246 1.44262 1.50061 1.53709 1.58170 1.72868 2.20745 2.34765 2.68787 3.04334 3.44234 3.56444 3.78792 3.94893 4.20561 4.31498 4.41484 4.53037 4.54554 4.66210 4.74065 4.85372 4.94726 4.96089 5.00272 5.18990 5.23133 5.28121 5.51489 5.69396 5.82605 5.87124 5.98043 6.11404 6.46201 6.67955 6.82802 6.90780 7.35179 8.31542 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.005524 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.631269 B = 5067.191129 C = 6928.876803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.984 3.016 4 H -0.249 1.249 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.478 4.478 8 H 0.094 0.906 9 C 0.083 3.917 10 C -0.163 4.163 11 C -0.023 4.023 12 Cl -0.104 7.104 13 C -0.222 4.222 14 C -0.098 4.098 15 C 0.020 3.980 16 N -0.634 5.634 17 C 0.503 3.497 18 O -0.569 6.569 19 C -0.138 4.138 20 H 0.143 0.857 21 C -0.145 4.145 22 C 0.045 3.955 23 O -0.403 6.403 24 C 0.055 3.945 25 H 0.289 0.711 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.415 0.585 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 -2.113 5.336 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.172 1.172 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.507 4.507 8 H 0.112 0.888 9 C 0.079 3.921 10 C -0.184 4.184 11 C -0.050 4.050 12 Cl -0.075 7.075 13 C -0.242 4.242 14 C -0.118 4.118 15 C -0.075 4.075 16 N -0.276 5.276 17 C 0.292 3.708 18 O -0.449 6.449 19 C -0.159 4.159 20 H 0.160 0.840 21 C -0.183 4.183 22 C -0.031 4.031 23 O -0.322 6.322 24 C -0.022 4.022 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.569 -2.748 5.034 12.025 hybrid contribution -0.326 1.058 -0.356 1.163 sum 10.243 -1.690 4.678 11.387 Atomic orbital electron populations 1.69864 1.09106 1.30764 1.34920 1.26770 0.95437 1.04551 0.91167 0.85105 0.79741 0.76076 0.78563 1.17206 1.19903 1.19239 1.19629 0.96772 0.90497 1.43836 0.88835 1.17598 0.92556 0.92185 0.89779 1.21068 0.99054 0.95626 1.02630 1.20862 0.90006 0.95636 0.98530 1.98244 1.40188 1.99028 1.70053 1.20404 1.00505 0.95921 1.07403 1.20941 0.94045 0.97582 0.99235 1.17943 0.92856 0.94640 1.02101 1.42899 1.23155 1.17278 1.44276 1.21184 0.86090 0.82386 0.81123 1.90564 1.73772 1.33397 1.47178 1.22803 0.93599 1.02633 0.96909 0.83958 1.23008 1.02086 0.94545 0.98677 1.23624 0.90888 0.98309 0.90324 1.89132 1.53784 1.24017 1.65311 1.23565 1.03899 0.85317 0.89408 0.89971 0.86263 0.86504 0.85616 0.74698 0.91144 0.87148 0.88773 0.89174 0.87336 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.82 10.86 21.83 0.24 -39.58 16 2 C 0.04 1.65 5.23 85.25 0.45 2.10 16 3 Si 0.98 33.96 29.58 68.60 2.03 35.99 16 4 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.48 -22.34 8.34 23.38 0.20 -22.14 16 8 H 0.09 3.97 7.28 -2.91 -0.02 3.94 16 9 C 0.08 4.15 5.57 -21.18 -0.12 4.03 16 10 C -0.16 -8.34 8.42 22.72 0.19 -8.15 16 11 C -0.02 -1.12 6.31 22.29 0.14 -0.98 16 12 Cl -0.10 -4.30 28.94 -2.72 -0.08 -4.38 16 13 C -0.22 -10.36 9.82 22.44 0.22 -10.14 16 14 C -0.10 -4.64 8.74 22.35 0.20 -4.45 16 15 C 0.02 0.92 6.44 38.86 0.25 1.17 16 16 N -0.63 -23.91 4.84 -302.29 -1.46 -25.37 16 17 C 0.50 17.67 6.94 87.66 0.61 18.27 16 18 O -0.57 -24.32 12.34 -3.06 -0.04 -24.35 16 19 C -0.14 -3.21 3.51 -10.53 -0.04 -3.24 16 20 H 0.14 2.41 8.14 -2.38 -0.02 2.39 16 21 C -0.15 -3.08 6.67 31.61 0.21 -2.87 16 22 C 0.04 0.85 7.63 72.48 0.55 1.41 16 23 O -0.40 -10.52 11.65 -148.98 -1.74 -12.26 16 24 C 0.06 1.17 7.17 72.48 0.52 1.69 16 25 H 0.29 12.79 8.30 -92.71 -0.77 12.02 16 26 H 0.12 6.39 6.21 -2.91 -0.02 6.37 16 27 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 28 H 0.13 6.01 5.72 -2.91 -0.02 5.99 16 29 H 0.42 13.56 7.68 -92.71 -0.71 12.85 16 30 H 0.07 1.97 6.50 -2.39 -0.02 1.96 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.99 7.66 -2.38 -0.02 1.97 16 Total: -1.00 -62.03 308.43 2.76 -59.27 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.43 Total: 33.98 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 3.38 Total: -23.30 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -1.23 Total: -64.95 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.77 Total: -36.61 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Atomic # 17 Polarization: -4.30 SS G_CDS: -0.08 Total: -4.38 kcal Total: -62.03 2.76 -59.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335193010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.568 kcal (2) G-P(sol) polarization free energy of solvation -62.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds