Wall clock time and date at job start Tue Mar 31 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86801 * 120.00133 * 2 1 4 4 H 1.48503 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46828 * 60.00186 * 3 2 1 6 6 H 1.48500 * 109.46860 * 299.99737 * 3 2 1 7 7 C 1.39955 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00060 * 201.62359 * 7 2 1 9 9 C 1.41069 * 120.00513 * 21.62817 * 7 2 1 10 10 C 1.40739 * 120.28922 * 37.96139 * 9 7 2 11 11 C 1.37543 * 119.81100 * 180.02562 * 10 9 7 12 12 Cl 1.73608 * 119.78873 * 179.97438 * 11 10 9 13 13 C 1.39001 * 120.42164 * 0.02562 * 11 10 9 14 14 C 1.38189 * 120.60143 * 359.97438 * 13 11 10 15 15 C 1.38607 * 120.17332 * 359.71484 * 14 13 11 16 16 N 1.39149 * 120.21594 * 180.29927 * 15 14 13 17 17 C 1.34776 * 119.99781 * 20.89506 * 16 15 14 18 18 O 1.21280 * 119.99972 * 4.33642 * 17 16 15 19 19 C 1.50696 * 119.99831 * 184.34243 * 17 16 15 20 20 H 1.08996 * 109.87426 * 303.98560 * 19 17 16 21 21 C 1.54098 * 109.88133 * 64.99994 * 19 17 16 22 22 C 1.54810 * 104.19048 * 121.45446 * 21 19 17 23 23 C 1.54989 * 102.09281 * 20.87546 * 22 21 19 24 24 O 1.43747 * 109.87560 * 182.82677 * 19 17 16 25 25 H 0.97009 * 120.00190 * 187.61759 * 1 2 3 26 26 H 1.08000 * 120.09537 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.69812 * 179.97438 * 13 11 10 28 28 H 1.07998 * 119.91313 * 179.97438 * 14 13 11 29 29 H 0.97002 * 120.00446 * 200.89008 * 16 15 14 30 30 H 1.09007 * 110.48526 * 240.13185 * 21 19 17 31 31 H 1.08997 * 110.48954 * 2.63667 * 21 19 17 32 32 H 1.08997 * 110.91023 * 139.08415 * 22 21 19 33 33 H 1.09004 * 110.90458 * 262.64532 * 22 21 19 34 34 H 1.09003 * 110.61653 * 81.48309 * 23 22 21 35 35 H 1.09004 * 110.61972 * 204.47473 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3462 0.0006 5 1 1.8838 2.3963 1.2125 6 1 1.8838 2.3964 -1.2126 7 6 2.0082 -1.2121 0.0005 8 1 3.0313 -1.2449 0.3452 9 6 1.3774 -2.3910 -0.4492 10 6 0.4980 -2.3509 -1.5473 11 6 -0.1121 -3.5063 -1.9772 12 17 -1.1973 -3.4561 -3.3314 13 6 0.1338 -4.7135 -1.3337 14 6 0.9940 -4.7727 -0.2538 15 6 1.6272 -3.6247 0.1961 16 7 2.4984 -3.6843 1.2795 17 6 3.0588 -4.8590 1.6297 18 8 2.8664 -5.8479 0.9544 19 6 3.9243 -4.9437 2.8604 20 1 4.7362 -4.2196 2.7929 21 6 3.0771 -4.6653 4.1171 22 6 3.2392 -5.9437 4.9749 23 6 4.5447 -6.5541 4.4045 24 8 4.4592 -6.2715 2.9912 25 1 -0.4851 -0.8327 0.1114 26 1 0.3022 -1.4156 -2.0504 27 1 -0.3519 -5.6135 -1.6808 28 1 1.1767 -5.7165 0.2381 29 1 2.7025 -2.8805 1.7827 30 1 3.4611 -3.7961 4.6512 31 1 2.0319 -4.5146 3.8469 32 1 3.3553 -5.6926 6.0292 33 1 2.3968 -6.6198 4.8286 34 1 5.4178 -6.0690 4.8409 35 1 4.5742 -7.6296 4.5798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335194082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:46 Heat of formation + Delta-G solvation = -76.812872 kcal Electronic energy + Delta-G solvation = -21277.881887 eV Core-core repulsion = 17879.981994 eV Total energy + Delta-G solvation = -3397.899893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35865 -38.83311 -37.32236 -35.63488 -34.00769 -33.80012 -32.19092 -30.16930 -29.64159 -28.05193 -25.27775 -23.79639 -21.95931 -21.78966 -21.04127 -19.60897 -18.16090 -17.40116 -16.72158 -16.29102 -15.62127 -15.18348 -14.96882 -14.32175 -14.15882 -13.82883 -13.75131 -13.47297 -13.01789 -12.65899 -12.42226 -12.08477 -11.89475 -11.77959 -11.46233 -11.34584 -11.17358 -11.01701 -10.87183 -10.65145 -10.51837 -10.27015 -10.00523 -9.65153 -9.36772 -9.15998 -8.79769 -7.79699 -7.41267 -6.96002 -4.64306 2.20021 2.56623 3.07957 3.08854 3.10747 3.16604 3.25897 3.32885 3.92810 4.06172 4.37882 4.44739 4.69075 4.75028 4.98564 5.04367 5.16507 5.31442 5.48263 5.51556 5.59167 5.78204 5.88543 6.09927 6.15511 6.51014 6.59293 6.70946 6.79362 7.11511 7.24667 7.42445 7.52173 7.63060 7.80463 7.95353 8.16899 8.44128 8.65151 8.75225 9.98601 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.005467 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.530918 B = 5120.275940 C = 6928.909600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.042 3.958 3 Si 1.068 2.932 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.095 3.905 10 C -0.179 4.179 11 C -0.005 4.005 12 Cl -0.119 7.119 13 C -0.212 4.212 14 C -0.091 4.091 15 C 0.036 3.964 16 N -0.633 5.633 17 C 0.497 3.503 18 O -0.517 6.517 19 C 0.063 3.937 20 H 0.093 0.907 21 C -0.149 4.149 22 C -0.153 4.153 23 C 0.044 3.956 24 O -0.347 6.347 25 H 0.297 0.703 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.137 0.863 29 H 0.408 0.592 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -3.908 9.221 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.179 4.179 3 Si 0.892 3.108 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.090 3.910 10 C -0.200 4.200 11 C -0.032 4.032 12 Cl -0.090 7.090 13 C -0.232 4.232 14 C -0.111 4.111 15 C -0.059 4.059 16 N -0.276 5.276 17 C 0.283 3.717 18 O -0.393 6.393 19 C 0.001 3.999 20 H 0.111 0.889 21 C -0.187 4.187 22 C -0.191 4.191 23 C -0.033 4.033 24 O -0.265 6.265 25 H 0.110 0.890 26 H 0.135 0.865 27 H 0.125 0.875 28 H 0.154 0.846 29 H 0.244 0.756 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.896 -3.118 8.412 10.220 hybrid contribution 0.098 -1.062 0.283 1.103 sum 4.993 -4.180 8.695 10.863 Atomic orbital electron populations 1.70389 1.07998 1.34207 1.29688 1.26906 0.95647 1.03939 0.91409 0.83589 0.75337 0.73664 0.78203 1.20224 1.20433 1.19905 1.20234 1.01086 0.93216 1.42264 0.90378 1.17287 0.92234 0.91611 0.89822 1.20886 1.04064 0.96160 0.98856 1.20733 0.95945 0.95806 0.90718 1.98270 1.64839 1.98954 1.46956 1.20242 1.06317 0.95428 1.01206 1.21054 0.95231 0.98103 0.96699 1.17916 0.99548 0.95766 0.92654 1.42856 1.43820 1.10367 1.30550 1.20387 0.81136 0.83800 0.86412 1.90600 1.60045 1.36108 1.52573 1.22593 0.96017 0.87225 0.94045 0.88898 1.22964 1.01799 0.99218 0.94675 1.23134 0.98994 0.96965 0.99983 1.23624 0.96741 1.01431 0.81511 1.89014 1.83816 1.30292 1.23364 0.88993 0.86531 0.87545 0.84577 0.75576 0.89450 0.89627 0.89868 0.90220 0.91950 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.96 12.73 55.55 0.71 -19.25 16 2 C 0.04 0.99 4.98 -17.33 -0.09 0.90 16 3 Si 1.07 20.14 29.98 -169.99 -5.10 15.05 16 4 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 7 C -0.54 -12.73 8.02 -37.87 -0.30 -13.04 16 8 H 0.08 1.76 7.57 -52.48 -0.40 1.37 16 9 C 0.09 2.30 5.02 -106.66 -0.53 1.77 16 10 C -0.18 -4.36 7.89 -38.89 -0.31 -4.67 16 11 C -0.01 -0.12 6.31 -39.55 -0.25 -0.37 16 12 Cl -0.12 -2.39 28.94 -51.86 -1.50 -3.89 16 13 C -0.21 -4.75 9.82 -39.32 -0.39 -5.13 16 14 C -0.09 -2.08 8.76 -39.46 -0.35 -2.43 16 15 C 0.04 0.82 6.52 -83.18 -0.54 0.28 16 16 N -0.63 -12.20 5.16 -9.48 -0.05 -12.24 16 17 C 0.50 9.29 6.80 -10.99 -0.07 9.21 16 18 O -0.52 -11.64 13.43 -14.02 -0.19 -11.83 16 19 C 0.06 0.88 3.85 -27.31 -0.11 0.78 16 20 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.15 -1.63 6.61 -25.20 -0.17 -1.79 16 22 C -0.15 -1.44 7.15 -24.73 -0.18 -1.62 16 23 C 0.04 0.45 7.72 38.21 0.29 0.74 16 24 O -0.35 -5.31 10.74 -54.81 -0.59 -5.90 16 25 H 0.30 7.67 7.03 -40.82 -0.29 7.39 16 26 H 0.12 2.95 7.31 -52.49 -0.38 2.56 16 27 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.14 3.14 5.45 -52.49 -0.29 2.86 16 29 H 0.41 7.00 7.61 -40.82 -0.31 6.69 16 30 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -28.66 311.29 -8.83 -37.49 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -3.82 Total: 11.24 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.98 Total: -15.36 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.66 Total: -31.50 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.78 Total: -17.73 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.10 Total: 15.05 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -1.50 Total: -3.89 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.66 -8.83 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335194082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.321 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds