Wall clock time and date at job start Tue Mar 31 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86801 * 120.00133 * 2 1 4 4 H 1.48503 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46828 * 60.00186 * 3 2 1 6 6 H 1.48500 * 109.46860 * 299.99737 * 3 2 1 7 7 C 1.39955 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00060 * 201.62359 * 7 2 1 9 9 C 1.41069 * 120.00513 * 21.62817 * 7 2 1 10 10 C 1.40739 * 120.28922 * 37.96139 * 9 7 2 11 11 C 1.37543 * 119.81100 * 180.02562 * 10 9 7 12 12 Cl 1.73608 * 119.78873 * 179.97438 * 11 10 9 13 13 C 1.39001 * 120.42164 * 0.02562 * 11 10 9 14 14 C 1.38189 * 120.60143 * 359.97438 * 13 11 10 15 15 C 1.38607 * 120.17332 * 359.71484 * 14 13 11 16 16 N 1.39149 * 120.21594 * 180.29927 * 15 14 13 17 17 C 1.34776 * 119.99781 * 20.89506 * 16 15 14 18 18 O 1.21280 * 119.99972 * 4.33642 * 17 16 15 19 19 C 1.50696 * 119.99831 * 184.34243 * 17 16 15 20 20 H 1.08996 * 109.87426 * 303.98560 * 19 17 16 21 21 C 1.54098 * 109.88133 * 64.99994 * 19 17 16 22 22 C 1.54810 * 104.19048 * 121.45446 * 21 19 17 23 23 C 1.54989 * 102.09281 * 20.87546 * 22 21 19 24 24 O 1.43747 * 109.87560 * 182.82677 * 19 17 16 25 25 H 0.97009 * 120.00190 * 187.61759 * 1 2 3 26 26 H 1.08000 * 120.09537 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.69812 * 179.97438 * 13 11 10 28 28 H 1.07998 * 119.91313 * 179.97438 * 14 13 11 29 29 H 0.97002 * 120.00446 * 200.89008 * 16 15 14 30 30 H 1.09007 * 110.48526 * 240.13185 * 21 19 17 31 31 H 1.08997 * 110.48954 * 2.63667 * 21 19 17 32 32 H 1.08997 * 110.91023 * 139.08415 * 22 21 19 33 33 H 1.09004 * 110.90458 * 262.64532 * 22 21 19 34 34 H 1.09003 * 110.61653 * 81.48309 * 23 22 21 35 35 H 1.09004 * 110.61972 * 204.47473 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3462 0.0006 5 1 1.8838 2.3963 1.2125 6 1 1.8838 2.3964 -1.2126 7 6 2.0082 -1.2121 0.0005 8 1 3.0313 -1.2449 0.3452 9 6 1.3774 -2.3910 -0.4492 10 6 0.4980 -2.3509 -1.5473 11 6 -0.1121 -3.5063 -1.9772 12 17 -1.1973 -3.4561 -3.3314 13 6 0.1338 -4.7135 -1.3337 14 6 0.9940 -4.7727 -0.2538 15 6 1.6272 -3.6247 0.1961 16 7 2.4984 -3.6843 1.2795 17 6 3.0588 -4.8590 1.6297 18 8 2.8664 -5.8479 0.9544 19 6 3.9243 -4.9437 2.8604 20 1 4.7362 -4.2196 2.7929 21 6 3.0771 -4.6653 4.1171 22 6 3.2392 -5.9437 4.9749 23 6 4.5447 -6.5541 4.4045 24 8 4.4592 -6.2715 2.9912 25 1 -0.4851 -0.8327 0.1114 26 1 0.3022 -1.4156 -2.0504 27 1 -0.3519 -5.6135 -1.6808 28 1 1.1767 -5.7165 0.2381 29 1 2.7025 -2.8805 1.7827 30 1 3.4611 -3.7961 4.6512 31 1 2.0319 -4.5146 3.8469 32 1 3.3553 -5.6926 6.0292 33 1 2.3968 -6.6198 4.8286 34 1 5.4178 -6.0690 4.8409 35 1 4.5742 -7.6296 4.5798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335194082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:45 Heat of formation + Delta-G solvation = -92.844835 kcal Electronic energy + Delta-G solvation = -21278.577085 eV Core-core repulsion = 17879.981994 eV Total energy + Delta-G solvation = -3398.595091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.75144 -40.17130 -38.92051 -37.35311 -35.72764 -35.50542 -33.14931 -31.47786 -31.38186 -29.56106 -27.06245 -24.97960 -23.58287 -22.80104 -22.59601 -21.11657 -19.90469 -18.83677 -18.10838 -17.46455 -17.14485 -16.57752 -16.39473 -15.75632 -15.59871 -15.41679 -14.93494 -14.67129 -14.60803 -14.36911 -14.15256 -13.82533 -13.09285 -12.91031 -12.75043 -12.70034 -12.53211 -12.43077 -12.18799 -11.99361 -11.91318 -11.81333 -11.39883 -11.10379 -10.98070 -10.86243 -10.34810 -9.65228 -9.25204 -8.73426 -6.49858 0.44331 0.72987 1.35222 1.57038 1.58481 1.65192 1.82486 1.98427 2.36472 2.65890 3.03591 3.33404 3.44947 3.67218 3.83600 4.01882 4.23431 4.27738 4.35932 4.40328 4.69522 4.75535 4.77762 4.80242 4.89422 4.97439 5.02146 5.12245 5.28744 5.44611 5.60945 5.69285 5.75549 5.81965 5.97675 6.14061 6.50292 6.71774 6.87106 7.20884 8.11682 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.005467 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.530918 B = 5120.275940 C = 6928.909600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.011 3.989 3 Si 1.117 2.883 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.087 0.913 9 C 0.073 3.927 10 C -0.194 4.194 11 C -0.013 4.013 12 Cl -0.095 7.095 13 C -0.211 4.211 14 C -0.104 4.104 15 C 0.034 3.966 16 N -0.628 5.628 17 C 0.493 3.507 18 O -0.560 6.560 19 C 0.068 3.932 20 H 0.120 0.880 21 C -0.146 4.146 22 C -0.148 4.148 23 C 0.037 3.963 24 O -0.385 6.385 25 H 0.281 0.719 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.418 0.582 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.691 -3.373 10.939 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.205 4.205 3 Si 0.935 3.065 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.105 0.895 9 C 0.069 3.931 10 C -0.215 4.215 11 C -0.041 4.041 12 Cl -0.067 7.067 13 C -0.231 4.231 14 C -0.125 4.125 15 C -0.061 4.061 16 N -0.272 5.272 17 C 0.282 3.718 18 O -0.439 6.439 19 C 0.007 3.993 20 H 0.137 0.863 21 C -0.183 4.183 22 C -0.185 4.185 23 C -0.038 4.038 24 O -0.304 6.304 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.142 0.858 28 H 0.152 0.848 29 H 0.256 0.744 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.306 -2.594 10.161 12.237 hybrid contribution -0.357 -1.367 -0.273 1.439 sum 5.949 -3.961 9.888 12.201 Atomic orbital electron populations 1.70506 1.08936 1.33153 1.31998 1.28201 0.95519 1.06940 0.89833 0.82984 0.75083 0.70078 0.78333 1.18369 1.19212 1.20301 1.20411 1.01413 0.93434 1.42714 0.89534 1.17562 0.92778 0.92524 0.90244 1.20833 1.05228 0.95969 0.99429 1.20790 0.96241 0.95472 0.91548 1.98265 1.63918 1.98926 1.45581 1.20484 1.05856 0.95960 1.00800 1.21181 0.95816 0.98173 0.97281 1.18078 0.99517 0.95241 0.93273 1.42866 1.43280 1.11354 1.29699 1.21388 0.80606 0.82584 0.87259 1.90566 1.61625 1.37400 1.54306 1.22686 0.96274 0.87768 0.92584 0.86269 1.23027 1.00292 1.01387 0.93636 1.23152 0.98089 0.95740 1.01556 1.23933 0.98144 1.02585 0.79183 1.88978 1.83925 1.30823 1.26662 0.90752 0.88153 0.85767 0.84800 0.74365 0.86080 0.91416 0.86516 0.91553 0.89305 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.64 12.73 21.83 0.28 -41.36 16 2 C 0.01 0.52 4.98 85.26 0.42 0.94 16 3 Si 1.12 39.52 29.98 68.60 2.06 41.58 16 4 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 5 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 6 H -0.28 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.55 -26.03 8.02 23.38 0.19 -25.84 16 8 H 0.09 3.84 7.57 -2.91 -0.02 3.82 16 9 C 0.07 3.62 5.02 -21.18 -0.11 3.51 16 10 C -0.19 -9.66 7.89 22.72 0.18 -9.48 16 11 C -0.01 -0.62 6.31 22.29 0.14 -0.48 16 12 Cl -0.10 -3.82 28.94 -2.72 -0.08 -3.89 16 13 C -0.21 -9.52 9.82 22.44 0.22 -9.30 16 14 C -0.10 -4.87 8.76 22.35 0.20 -4.67 16 15 C 0.03 1.60 6.52 38.86 0.25 1.86 16 16 N -0.63 -24.14 5.16 -302.31 -1.56 -25.70 16 17 C 0.49 18.34 6.80 87.66 0.60 18.94 16 18 O -0.56 -25.64 13.43 15.69 0.21 -25.43 16 19 C 0.07 1.80 3.85 30.22 0.12 1.91 16 20 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 21 C -0.15 -2.82 6.61 31.58 0.21 -2.61 16 22 C -0.15 -2.36 7.15 31.89 0.23 -2.13 16 23 C 0.04 0.66 7.72 72.66 0.56 1.22 16 24 O -0.39 -11.25 10.74 -130.26 -1.40 -12.65 16 25 H 0.28 14.96 7.03 -92.70 -0.65 14.31 16 26 H 0.10 5.24 7.31 -2.91 -0.02 5.22 16 27 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 28 H 0.13 6.34 5.45 -2.91 -0.02 6.32 16 29 H 0.42 14.04 7.61 -92.71 -0.71 13.34 16 30 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 1.57 7.69 -2.39 -0.02 1.55 16 32 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -63.39 311.29 3.26 -60.13 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.55 Total: 33.45 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.20 Total: -26.12 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -1.28 Total: -67.06 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.19 Total: -38.08 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.06 Total: 41.58 kcal Atomic # 17 Polarization: -3.82 SS G_CDS: -0.08 Total: -3.89 kcal Total: -63.39 3.26 -60.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335194082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.715 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds