Wall clock time and date at job start Tue Mar 31 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86792 * 120.00323 * 2 1 4 4 H 1.48503 * 109.47333 * 91.57568 * 3 2 1 5 5 H 1.48502 * 109.47126 * 211.58014 * 3 2 1 6 6 H 1.48505 * 109.47025 * 331.57482 * 3 2 1 7 7 C 1.39952 * 119.99374 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00730 * 18.40120 * 7 2 1 9 9 C 1.41070 * 119.99589 * 198.39886 * 7 2 1 10 10 C 1.40741 * 120.29404 * 33.57322 * 9 7 2 11 11 C 1.37545 * 119.81367 * 179.78870 * 10 9 7 12 12 Cl 1.73593 * 119.79277 * 180.22971 * 11 10 9 13 13 C 1.39002 * 120.41495 * 0.48610 * 11 10 9 14 14 C 1.38184 * 120.60924 * 359.74560 * 13 11 10 15 15 C 1.38611 * 120.17219 * 0.02562 * 14 13 11 16 16 N 1.39143 * 120.21344 * 180.02562 * 15 14 13 17 17 C 1.34772 * 119.99949 * 332.08334 * 16 15 14 18 18 O 1.21285 * 120.00422 * 4.09310 * 17 16 15 19 19 C 1.50703 * 119.99998 * 184.08831 * 17 16 15 20 20 H 1.09001 * 110.32928 * 57.25541 * 19 17 16 21 21 C 1.54484 * 110.37341 * 295.00280 * 19 17 16 22 22 C 1.54510 * 104.06053 * 217.19092 * 21 19 17 23 23 C 1.54477 * 104.06458 * 359.97438 * 22 21 19 24 24 O 1.44423 * 104.80261 * 23.98522 * 23 22 21 25 25 H 0.97001 * 119.99180 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.09223 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.69704 * 179.76054 * 13 11 10 28 28 H 1.07999 * 119.91846 * 179.97438 * 14 13 11 29 29 H 0.97005 * 119.99969 * 152.08860 * 16 15 14 30 30 H 1.08996 * 110.50609 * 335.83472 * 21 19 17 31 31 H 1.08998 * 110.50925 * 98.54228 * 21 19 17 32 32 H 1.08994 * 110.51073 * 118.64741 * 22 21 19 33 33 H 1.09004 * 110.50549 * 241.35143 * 22 21 19 34 34 H 1.09007 * 110.36928 * 142.81055 * 23 22 21 35 35 H 1.08997 * 110.37656 * 265.03607 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.5236 2.0271 1.3996 5 1 3.5231 1.4499 -0.7332 6 1 1.4239 2.6620 -0.6665 7 6 2.0083 -1.2121 -0.0005 8 1 1.5097 -2.1234 -0.2962 9 6 3.3649 -1.2435 0.3851 10 6 3.8415 -0.3662 1.3770 11 6 5.1652 -0.4083 1.7484 12 17 5.7512 0.6700 2.9762 13 6 6.0378 -1.3052 1.1432 14 6 5.5894 -2.1711 0.1641 15 6 4.2595 -2.1531 -0.2260 16 7 3.8069 -3.0250 -1.2115 17 6 4.6549 -3.4672 -2.1611 18 8 5.8286 -3.1651 -2.1144 19 6 4.1448 -4.3372 -3.2809 20 1 3.3452 -3.8298 -3.8205 21 6 3.6454 -5.6898 -2.7263 22 6 4.0654 -6.7152 -3.8031 23 6 4.7682 -5.8607 -4.8812 24 8 5.2206 -4.6817 -4.1806 25 1 -0.4849 0.8401 -0.0004 26 1 3.1692 0.3361 1.8472 27 1 7.0757 -1.3257 1.4411 28 1 6.2771 -2.8631 -0.2991 29 1 2.8811 -3.3145 -1.2151 30 1 4.1289 -5.9146 -1.7756 31 1 2.5616 -5.6787 -2.6114 32 1 4.7564 -7.4470 -3.3848 33 1 3.1890 -7.2110 -4.2206 34 1 5.6165 -6.4018 -5.3006 35 1 4.0650 -5.5899 -5.6688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335194089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:48 Heat of formation + Delta-G solvation = -69.044290 kcal Electronic energy + Delta-G solvation = -21278.540242 eV Core-core repulsion = 17880.977220 eV Total energy + Delta-G solvation = -3397.563022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30896 -38.86065 -37.36718 -35.70666 -33.93943 -33.73109 -32.16730 -30.63570 -30.14745 -28.12560 -25.40110 -23.91667 -22.22288 -21.63081 -20.80893 -19.68781 -17.70305 -17.56285 -16.84388 -16.33657 -15.76973 -15.25301 -14.98334 -14.52794 -14.33818 -13.86186 -13.63509 -13.49024 -13.20456 -12.66035 -12.56055 -12.06420 -11.93158 -11.79546 -11.65816 -11.46440 -11.26978 -10.97010 -10.88020 -10.67342 -10.51961 -10.05642 -10.02803 -9.90254 -9.47776 -9.32831 -8.85407 -7.86180 -7.18873 -7.11791 -4.66568 2.10297 2.44297 2.97225 3.02421 3.07347 3.12202 3.24872 3.33268 3.88038 4.10902 4.31816 4.43530 4.67601 4.78951 4.99020 5.05224 5.09414 5.31267 5.46866 5.53092 5.63515 5.79037 5.87120 5.98636 6.07315 6.42413 6.46720 6.64835 6.66824 6.96502 7.11114 7.16620 7.43314 7.45835 7.74284 8.00999 8.10180 8.35484 8.55252 8.71774 9.89092 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.005164 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.911606 B = 5420.849521 C = 6640.928230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.091 3.909 3 Si 0.900 3.100 4 H -0.260 1.260 5 H -0.247 1.247 6 H -0.286 1.286 7 C -0.453 4.453 8 H 0.093 0.907 9 C 0.092 3.908 10 C -0.219 4.219 11 C 0.008 3.992 12 Cl -0.117 7.117 13 C -0.213 4.213 14 C -0.080 4.080 15 C 0.043 3.957 16 N -0.634 5.634 17 C 0.507 3.493 18 O -0.517 6.517 19 C 0.059 3.941 20 H 0.097 0.903 21 C -0.147 4.147 22 C -0.153 4.153 23 C 0.041 3.959 24 O -0.344 6.344 25 H 0.288 0.712 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.408 0.592 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -8.542 -5.132 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.186 1.186 5 H -0.170 1.170 6 H -0.213 1.213 7 C -0.481 4.481 8 H 0.111 0.889 9 C 0.087 3.913 10 C -0.240 4.240 11 C -0.019 4.019 12 Cl -0.089 7.089 13 C -0.233 4.233 14 C -0.100 4.100 15 C -0.051 4.051 16 N -0.278 5.278 17 C 0.292 3.708 18 O -0.393 6.393 19 C -0.002 4.002 20 H 0.114 0.886 21 C -0.185 4.185 22 C -0.190 4.190 23 C -0.036 4.036 24 O -0.262 6.262 25 H 0.098 0.902 26 H 0.137 0.863 27 H 0.127 0.873 28 H 0.153 0.847 29 H 0.244 0.756 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.064 -8.050 -5.095 10.008 hybrid contribution -0.521 0.684 0.120 0.868 sum 2.544 -7.365 -4.976 9.245 Atomic orbital electron populations 1.69684 1.07975 1.30587 1.34202 1.26028 0.94669 1.01510 0.90717 0.86473 0.80920 0.79891 0.80206 1.18577 1.17014 1.21313 1.19100 0.92747 0.96227 1.40025 0.88933 1.17352 0.93121 0.89912 0.90885 1.20898 0.93748 1.06812 1.02553 1.20701 0.94217 0.94209 0.92764 1.98275 1.89302 1.65506 1.55769 1.20251 0.98404 1.01649 1.03042 1.20995 0.94827 0.98780 0.95411 1.17717 0.93305 0.99202 0.94890 1.42785 1.13722 1.45116 1.26170 1.20113 0.86719 0.81351 0.82572 1.90633 1.16623 1.56762 1.75262 1.22854 0.90552 0.95836 0.90946 0.88574 1.22955 1.02461 0.93028 1.00102 1.22934 1.01182 0.98619 0.96294 1.23478 0.99366 0.86136 0.94656 1.89277 1.38041 1.44757 1.54129 0.90169 0.86314 0.87251 0.84657 0.75564 0.89958 0.89314 0.90426 0.90200 0.88816 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.74 13.93 55.55 0.77 -18.96 16 2 C 0.09 2.21 5.38 -17.32 -0.09 2.12 16 3 Si 0.90 20.13 24.83 -169.99 -4.22 15.91 16 4 H -0.26 -5.74 6.44 56.52 0.36 -5.38 16 5 H -0.25 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.45 -10.93 9.01 -37.87 -0.34 -11.27 16 8 H 0.09 2.20 7.08 -52.49 -0.37 1.83 16 9 C 0.09 2.17 5.01 -106.65 -0.53 1.63 16 10 C -0.22 -5.14 7.09 -38.89 -0.28 -5.41 16 11 C 0.01 0.17 6.31 -39.55 -0.25 -0.08 16 12 Cl -0.12 -2.27 28.94 -51.86 -1.50 -3.77 16 13 C -0.21 -4.56 9.82 -39.32 -0.39 -4.95 16 14 C -0.08 -1.75 8.75 -39.46 -0.35 -2.10 16 15 C 0.04 0.95 6.45 -83.18 -0.54 0.42 16 16 N -0.63 -11.89 5.10 -9.48 -0.05 -11.94 16 17 C 0.51 9.33 6.95 -10.99 -0.08 9.25 16 18 O -0.52 -11.45 13.58 -13.65 -0.19 -11.64 16 19 C 0.06 0.84 3.71 -27.10 -0.10 0.74 16 20 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 21 C -0.15 -1.58 6.61 -25.16 -0.17 -1.74 16 22 C -0.15 -1.33 7.09 -25.16 -0.18 -1.51 16 23 C 0.04 0.41 7.63 37.93 0.29 0.70 16 24 O -0.34 -5.28 10.91 -54.44 -0.59 -5.87 16 25 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.12 2.81 5.07 -52.49 -0.27 2.54 16 27 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16 28 H 0.14 2.97 5.67 -52.49 -0.30 2.67 16 29 H 0.41 6.72 7.42 -40.82 -0.30 6.42 16 30 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -28.66 306.05 -7.93 -36.59 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.78 Total: 7.25 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.99 Total: -12.19 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.73 Total: -30.91 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.78 Total: -17.51 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.22 Total: 15.91 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -1.50 Total: -3.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.66 -7.93 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335194089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.451 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds