Wall clock time and date at job start Tue Mar 31 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86792 * 120.00323 * 2 1 4 4 H 1.48503 * 109.47333 * 91.57568 * 3 2 1 5 5 H 1.48502 * 109.47126 * 211.58014 * 3 2 1 6 6 H 1.48505 * 109.47025 * 331.57482 * 3 2 1 7 7 C 1.39952 * 119.99374 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00730 * 18.40120 * 7 2 1 9 9 C 1.41070 * 119.99589 * 198.39886 * 7 2 1 10 10 C 1.40741 * 120.29404 * 33.57322 * 9 7 2 11 11 C 1.37545 * 119.81367 * 179.78870 * 10 9 7 12 12 Cl 1.73593 * 119.79277 * 180.22971 * 11 10 9 13 13 C 1.39002 * 120.41495 * 0.48610 * 11 10 9 14 14 C 1.38184 * 120.60924 * 359.74560 * 13 11 10 15 15 C 1.38611 * 120.17219 * 0.02562 * 14 13 11 16 16 N 1.39143 * 120.21344 * 180.02562 * 15 14 13 17 17 C 1.34772 * 119.99949 * 332.08334 * 16 15 14 18 18 O 1.21285 * 120.00422 * 4.09310 * 17 16 15 19 19 C 1.50703 * 119.99998 * 184.08831 * 17 16 15 20 20 H 1.09001 * 110.32928 * 57.25541 * 19 17 16 21 21 C 1.54484 * 110.37341 * 295.00280 * 19 17 16 22 22 C 1.54510 * 104.06053 * 217.19092 * 21 19 17 23 23 C 1.54477 * 104.06458 * 359.97438 * 22 21 19 24 24 O 1.44423 * 104.80261 * 23.98522 * 23 22 21 25 25 H 0.97001 * 119.99180 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.09223 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.69704 * 179.76054 * 13 11 10 28 28 H 1.07999 * 119.91846 * 179.97438 * 14 13 11 29 29 H 0.97005 * 119.99969 * 152.08860 * 16 15 14 30 30 H 1.08996 * 110.50609 * 335.83472 * 21 19 17 31 31 H 1.08998 * 110.50925 * 98.54228 * 21 19 17 32 32 H 1.08994 * 110.51073 * 118.64741 * 22 21 19 33 33 H 1.09004 * 110.50549 * 241.35143 * 22 21 19 34 34 H 1.09007 * 110.36928 * 142.81055 * 23 22 21 35 35 H 1.08997 * 110.37656 * 265.03607 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.5236 2.0271 1.3996 5 1 3.5231 1.4499 -0.7332 6 1 1.4239 2.6620 -0.6665 7 6 2.0083 -1.2121 -0.0005 8 1 1.5097 -2.1234 -0.2962 9 6 3.3649 -1.2435 0.3851 10 6 3.8415 -0.3662 1.3770 11 6 5.1652 -0.4083 1.7484 12 17 5.7512 0.6700 2.9762 13 6 6.0378 -1.3052 1.1432 14 6 5.5894 -2.1711 0.1641 15 6 4.2595 -2.1531 -0.2260 16 7 3.8069 -3.0250 -1.2115 17 6 4.6549 -3.4672 -2.1611 18 8 5.8286 -3.1651 -2.1144 19 6 4.1448 -4.3372 -3.2809 20 1 3.3452 -3.8298 -3.8205 21 6 3.6454 -5.6898 -2.7263 22 6 4.0654 -6.7152 -3.8031 23 6 4.7682 -5.8607 -4.8812 24 8 5.2206 -4.6817 -4.1806 25 1 -0.4849 0.8401 -0.0004 26 1 3.1692 0.3361 1.8472 27 1 7.0757 -1.3257 1.4411 28 1 6.2771 -2.8631 -0.2991 29 1 2.8811 -3.3145 -1.2151 30 1 4.1289 -5.9146 -1.7756 31 1 2.5616 -5.6787 -2.6114 32 1 4.7564 -7.4470 -3.3848 33 1 3.1890 -7.2110 -4.2206 34 1 5.6165 -6.4018 -5.3006 35 1 4.0650 -5.5899 -5.6688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335194089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:48 Heat of formation + Delta-G solvation = -86.041912 kcal Electronic energy + Delta-G solvation = -21279.277314 eV Core-core repulsion = 17880.977220 eV Total energy + Delta-G solvation = -3398.300094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.68892 -40.16071 -38.92442 -37.35142 -35.55647 -35.51505 -33.10064 -32.42802 -31.35721 -29.58204 -27.14511 -25.08474 -23.85623 -22.53994 -22.36287 -21.16148 -19.50962 -19.00635 -18.25532 -17.42476 -17.35392 -16.45036 -16.37273 -16.18984 -15.73825 -15.30227 -15.13520 -14.78070 -14.58778 -14.29353 -14.20002 -13.80668 -13.42140 -13.03646 -12.76287 -12.72113 -12.69525 -12.43940 -12.25300 -12.19067 -11.82980 -11.70362 -11.59550 -11.25383 -11.00546 -10.87348 -10.42913 -9.65648 -8.96340 -8.88347 -6.50728 0.38142 0.64348 1.26525 1.31279 1.33638 1.43541 1.57269 1.99086 2.08318 2.51490 3.10209 3.28375 3.48195 3.67956 3.91965 4.08472 4.20418 4.24579 4.36282 4.41170 4.67534 4.68348 4.74322 4.83093 4.93216 4.96936 5.02578 5.14971 5.18051 5.36735 5.44006 5.67581 5.68732 5.79822 5.98016 6.21071 6.43731 6.68025 6.74361 7.21695 8.10191 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.005164 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.911606 B = 5420.849521 C = 6640.928230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.068 3.932 3 Si 0.933 3.067 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.468 4.468 8 H 0.088 0.912 9 C 0.077 3.923 10 C -0.231 4.231 11 C -0.004 4.004 12 Cl -0.093 7.093 13 C -0.204 4.204 14 C -0.092 4.092 15 C 0.044 3.956 16 N -0.631 5.631 17 C 0.504 3.496 18 O -0.558 6.558 19 C 0.063 3.937 20 H 0.117 0.883 21 C -0.144 4.144 22 C -0.144 4.144 23 C 0.032 3.968 24 O -0.383 6.383 25 H 0.295 0.705 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.419 0.581 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -9.434 -5.692 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.149 4.149 3 Si 0.758 3.242 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.497 4.497 8 H 0.106 0.894 9 C 0.072 3.928 10 C -0.252 4.252 11 C -0.031 4.031 12 Cl -0.064 7.064 13 C -0.224 4.224 14 C -0.113 4.113 15 C -0.051 4.051 16 N -0.275 5.275 17 C 0.292 3.708 18 O -0.437 6.437 19 C 0.002 3.998 20 H 0.134 0.866 21 C -0.182 4.182 22 C -0.182 4.182 23 C -0.044 4.044 24 O -0.302 6.302 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.257 0.743 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.020 -8.955 -5.660 11.016 hybrid contribution -0.362 0.899 0.298 1.014 sum 2.659 -8.056 -5.363 10.036 Atomic orbital electron populations 1.69681 1.08424 1.31450 1.35700 1.26377 0.95025 1.02828 0.90691 0.85976 0.79399 0.78789 0.80079 1.18198 1.19271 1.19799 1.19140 0.93139 0.96295 1.41103 0.89371 1.17483 0.93257 0.90659 0.91398 1.20968 0.94432 1.06938 1.02829 1.20771 0.93939 0.94842 0.93533 1.98275 1.88926 1.64636 1.54569 1.20550 0.99371 1.00506 1.01951 1.21134 0.94901 0.99337 0.95885 1.17908 0.93280 0.98907 0.95005 1.42813 1.14425 1.44489 1.25736 1.21000 0.86036 0.80806 0.82968 1.90598 1.18462 1.58334 1.76306 1.22923 0.90478 0.96827 0.89604 0.86602 1.23004 1.03791 0.91472 0.99973 1.22944 1.02268 0.97885 0.95097 1.23784 1.00549 0.84886 0.95144 1.89239 1.39249 1.46947 1.54805 0.89404 0.86853 0.85102 0.84671 0.74324 0.91257 0.86800 0.90128 0.87275 0.87662 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.71 13.93 21.83 0.30 -40.41 16 2 C 0.07 3.33 5.38 85.25 0.46 3.79 16 3 Si 0.93 41.08 24.83 68.60 1.70 42.78 16 4 H -0.26 -11.04 6.44 99.48 0.64 -10.40 16 5 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.47 -22.72 9.01 23.38 0.21 -22.50 16 8 H 0.09 4.23 7.08 -2.91 -0.02 4.21 16 9 C 0.08 3.62 5.01 -21.18 -0.11 3.51 16 10 C -0.23 -10.75 7.09 22.72 0.16 -10.59 16 11 C 0.00 -0.17 6.31 22.29 0.14 -0.03 16 12 Cl -0.09 -3.44 28.94 -2.72 -0.08 -3.52 16 13 C -0.20 -8.49 9.82 22.44 0.22 -8.27 16 14 C -0.09 -4.02 8.75 22.35 0.20 -3.82 16 15 C 0.04 1.96 6.45 38.86 0.25 2.21 16 16 N -0.63 -23.51 5.10 -302.30 -1.54 -25.05 16 17 C 0.50 18.43 6.95 87.66 0.61 19.04 16 18 O -0.56 -24.97 13.58 15.32 0.21 -24.76 16 19 C 0.06 1.68 3.71 30.35 0.11 1.79 16 20 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 21 C -0.14 -2.76 6.61 31.61 0.21 -2.55 16 22 C -0.14 -2.08 7.09 31.61 0.22 -1.85 16 23 C 0.03 0.58 7.63 72.48 0.55 1.13 16 24 O -0.38 -11.34 10.91 -130.61 -1.43 -12.76 16 25 H 0.30 13.27 8.30 -92.71 -0.77 12.50 16 26 H 0.11 5.33 5.07 -2.91 -0.01 5.32 16 27 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.14 5.95 5.67 -2.91 -0.02 5.93 16 29 H 0.42 13.61 7.42 -92.70 -0.69 12.92 16 30 H 0.07 1.51 7.86 -2.39 -0.02 1.49 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -61.42 306.05 2.80 -58.63 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.39 Total: 23.25 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 3.24 Total: -18.15 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -1.24 Total: -65.46 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.22 Total: -37.52 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.70 Total: 42.78 kcal Atomic # 17 Polarization: -3.44 SS G_CDS: -0.08 Total: -3.52 kcal Total: -61.42 2.80 -58.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335194089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.416 kcal (2) G-P(sol) polarization free energy of solvation -61.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds