Wall clock time and date at job start Tue Mar 31 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47389 * 239.99942 * 3 2 1 5 5 H 1.48498 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47568 * 119.99996 * 3 2 1 7 7 C 1.38732 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99664 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00431 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00306 * 174.99653 * 9 7 2 11 11 C 1.39220 * 120.01824 * 275.01235 * 10 9 7 12 12 C 1.38141 * 120.19731 * 179.97438 * 11 10 9 13 13 C 1.38078 * 120.24815 * 359.78332 * 12 11 10 14 14 C 1.39639 * 120.03445 * 0.47473 * 13 12 11 15 15 C 1.47863 * 120.09919 * 179.78909 * 14 13 12 16 16 O 1.21553 * 119.99622 * 187.82946 * 15 14 13 17 17 N 1.34774 * 120.00135 * 7.83089 * 15 14 13 18 18 C 1.47020 * 125.64963 * 354.97140 * 17 15 14 19 19 C 1.54326 * 107.40500 * 178.82804 * 18 17 15 20 20 C 1.55410 * 102.82550 * 337.97589 * 19 18 17 21 21 H 1.09000 * 110.88902 * 277.27044 * 20 19 18 22 22 F 1.39895 * 111.03388 * 153.47083 * 20 19 18 23 23 C 1.47426 * 125.65006 * 174.92711 * 17 15 14 24 24 C 1.38827 * 120.01961 * 94.98750 * 10 9 7 25 25 H 0.97000 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.90071 * 359.97438 * 11 10 9 27 27 H 1.08004 * 119.87587 * 180.02562 * 12 11 10 28 28 H 1.07997 * 119.98344 * 180.23076 * 13 12 11 29 29 H 1.09002 * 109.88538 * 298.32476 * 18 17 15 30 30 H 1.09008 * 109.88295 * 59.33477 * 18 17 15 31 31 H 1.08993 * 110.71982 * 96.24609 * 19 18 17 32 32 H 1.08998 * 110.71904 * 219.52598 * 19 18 17 33 33 H 1.09001 * 110.36632 * 323.00796 * 23 17 15 34 34 H 1.09002 * 110.36305 * 85.32520 * 23 17 15 35 35 H 1.07998 * 120.12203 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2015 0.0001 9 16 1.1288 -2.7274 0.0005 10 6 2.4728 -3.8568 -0.1500 11 6 2.9815 -4.1704 -1.4075 12 6 4.0355 -5.0549 -1.5297 13 6 4.5945 -5.6305 -0.4060 14 6 4.0887 -5.3272 0.8597 15 6 4.6832 -5.9463 2.0637 16 8 4.1556 -5.7952 3.1483 17 7 5.8100 -6.6782 1.9586 18 6 6.4910 -7.0273 0.7033 19 6 7.7471 -7.8449 1.0715 20 6 8.0075 -7.4317 2.5468 21 1 8.5567 -6.4915 2.5959 22 9 8.6834 -8.4419 3.2393 23 6 6.5645 -7.2605 3.0834 24 6 3.0255 -4.4340 0.9852 25 1 -0.4850 0.8400 -0.0004 26 1 2.5508 -3.7208 -2.2899 27 1 4.4264 -5.2942 -2.5077 28 1 5.4208 -6.3186 -0.5063 29 1 5.8297 -7.6258 0.0767 30 1 6.7815 -6.1196 0.1742 31 1 7.5459 -8.9138 1.0006 32 1 8.5881 -7.5667 0.4364 33 1 6.5552 -6.5832 3.9375 34 1 6.1455 -8.2278 3.3608 35 1 2.6329 -4.1926 1.9619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335442864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:16 Heat of formation + Delta-G solvation = -36.906509 kcal Electronic energy + Delta-G solvation = -20498.437703 eV Core-core repulsion = 17116.684776 eV Total energy + Delta-G solvation = -3381.752927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.05779 -40.49088 -38.10479 -37.25567 -32.52909 -32.11863 -30.85623 -30.65423 -28.88969 -25.59004 -24.98765 -22.75210 -22.33895 -21.56751 -20.04422 -18.16210 -17.54639 -17.15803 -16.34389 -15.96775 -15.60562 -15.12160 -14.95953 -14.87243 -14.51657 -14.20334 -14.10682 -13.59951 -13.30018 -13.17544 -13.09128 -12.63506 -12.32155 -12.19561 -11.36206 -11.26109 -11.18246 -11.16239 -11.08870 -10.95415 -10.62059 -10.04498 -9.83478 -9.17061 -9.04121 -8.99504 -8.60442 -8.04882 -6.73445 -6.30364 -4.04568 1.12332 1.63378 2.60796 2.93218 3.18467 3.20161 3.24722 3.43529 3.72224 3.91976 4.01586 4.11058 4.22720 4.36926 4.58764 4.68472 4.94227 5.05482 5.06458 5.14627 5.19927 5.22818 5.35927 5.40288 5.45693 5.60135 5.69282 5.82914 5.87193 6.08034 6.22044 6.53235 6.61996 6.90049 7.16515 7.25796 7.54945 8.09638 8.30153 9.15074 10.76385 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.003427 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.850708 B = 8168.708599 C = 8408.494484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.075 0.925 9 S -0.034 6.034 10 C -0.107 4.107 11 C -0.053 4.053 12 C -0.142 4.142 13 C -0.127 4.127 14 C -0.152 4.152 15 C 0.583 3.417 16 O -0.529 6.529 17 N -0.620 5.620 18 C 0.092 3.908 19 C -0.159 4.159 20 C 0.077 3.923 21 H 0.105 0.895 22 F -0.199 7.199 23 C 0.086 3.914 24 C -0.019 4.019 25 H 0.270 0.730 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.150 0.850 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.838 -14.980 -1.405 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.669 4.669 8 H 0.093 0.907 9 S 0.201 5.799 10 C -0.217 4.217 11 C -0.075 4.075 12 C -0.162 4.162 13 C -0.145 4.145 14 C -0.157 4.157 15 C 0.374 3.626 16 O -0.405 6.405 17 N -0.356 5.356 18 C -0.030 4.030 19 C -0.197 4.197 20 C 0.040 3.960 21 H 0.123 0.877 22 F -0.180 7.180 23 C -0.038 4.038 24 C -0.041 4.041 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.116 -14.898 -0.700 20.536 hybrid contribution 1.929 1.141 -0.185 2.249 sum 16.045 -13.757 -0.884 21.154 Atomic orbital electron populations 1.69974 1.05908 1.27808 1.46855 1.24998 0.95123 0.99093 0.94331 0.86174 0.79240 0.80893 0.78989 1.19847 1.20710 1.19789 1.22793 0.94831 0.90220 1.59044 0.90700 1.83634 1.04024 0.97046 1.95244 1.22833 1.02948 1.02048 0.93921 1.22041 0.93840 0.93912 0.97669 1.21120 0.97897 0.99030 0.98159 1.22496 1.00178 0.99900 0.91883 1.19698 1.00658 1.03005 0.92327 1.18173 0.78352 0.76914 0.89127 1.90791 1.60341 1.60485 1.28901 1.48131 1.26177 1.53837 1.07421 1.22568 0.93207 0.99641 0.87618 1.23396 0.98479 1.02093 0.95771 1.22732 0.92234 0.89864 0.91213 0.87730 1.92832 1.81411 1.62772 1.80990 1.22662 0.89591 1.00540 0.90978 1.21898 0.91260 0.91415 0.99504 0.91973 0.85122 0.85886 0.83278 0.89483 0.89421 0.88975 0.88483 0.89021 0.90110 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.35 13.22 55.49 0.73 -24.61 16 2 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.64 9.46 30.92 0.29 -14.35 16 8 H 0.07 2.07 7.79 -52.48 -0.41 1.66 16 9 S -0.03 -0.88 21.41 -107.50 -2.30 -3.18 16 10 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 11 C -0.05 -0.96 9.79 -39.25 -0.38 -1.35 16 12 C -0.14 -2.00 10.02 -39.68 -0.40 -2.40 16 13 C -0.13 -1.69 8.59 -39.12 -0.34 -2.03 16 14 C -0.15 -2.54 5.87 -104.99 -0.62 -3.16 16 15 C 0.58 9.44 7.81 -12.32 -0.10 9.34 16 16 O -0.53 -10.46 16.67 5.32 0.09 -10.37 16 17 N -0.62 -7.24 3.33 -175.45 -0.58 -7.82 16 18 C 0.09 0.70 4.87 -3.06 -0.01 0.68 16 19 C -0.16 -0.89 6.79 -24.76 -0.17 -1.06 16 20 C 0.08 0.56 4.86 -24.45 -0.12 0.44 16 21 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 22 F -0.20 -1.80 17.24 2.25 0.04 -1.76 16 23 C 0.09 0.85 6.70 -2.53 -0.02 0.83 16 24 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 27 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.15 1.39 2.76 -57.46 -0.16 1.23 16 29 H 0.09 0.58 6.79 -51.93 -0.35 0.23 16 30 H 0.09 0.62 6.67 -51.92 -0.35 0.27 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.14 2.97 7.67 -52.49 -0.40 2.57 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -33.16 314.54 -8.60 -41.76 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.76 Total: -0.65 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.53 Total: -14.32 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.15 Total: -32.44 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.16 -8.60 -41.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335442864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.850 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds