Wall clock time and date at job start Tue Mar 31 2020 07:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47389 * 239.99942 * 3 2 1 5 5 H 1.48498 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47568 * 119.99996 * 3 2 1 7 7 C 1.38732 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99664 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00431 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00306 * 174.99653 * 9 7 2 11 11 C 1.39220 * 120.01824 * 275.01235 * 10 9 7 12 12 C 1.38141 * 120.19731 * 179.97438 * 11 10 9 13 13 C 1.38078 * 120.24815 * 359.78332 * 12 11 10 14 14 C 1.39639 * 120.03445 * 0.47473 * 13 12 11 15 15 C 1.47863 * 120.09919 * 179.78909 * 14 13 12 16 16 O 1.21553 * 119.99622 * 187.82946 * 15 14 13 17 17 N 1.34774 * 120.00135 * 7.83089 * 15 14 13 18 18 C 1.47020 * 125.64963 * 354.97140 * 17 15 14 19 19 C 1.54326 * 107.40500 * 178.82804 * 18 17 15 20 20 C 1.55410 * 102.82550 * 337.97589 * 19 18 17 21 21 H 1.09000 * 110.88902 * 277.27044 * 20 19 18 22 22 F 1.39895 * 111.03388 * 153.47083 * 20 19 18 23 23 C 1.47426 * 125.65006 * 174.92711 * 17 15 14 24 24 C 1.38827 * 120.01961 * 94.98750 * 10 9 7 25 25 H 0.97000 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.90071 * 359.97438 * 11 10 9 27 27 H 1.08004 * 119.87587 * 180.02562 * 12 11 10 28 28 H 1.07997 * 119.98344 * 180.23076 * 13 12 11 29 29 H 1.09002 * 109.88538 * 298.32476 * 18 17 15 30 30 H 1.09008 * 109.88295 * 59.33477 * 18 17 15 31 31 H 1.08993 * 110.71982 * 96.24609 * 19 18 17 32 32 H 1.08998 * 110.71904 * 219.52598 * 19 18 17 33 33 H 1.09001 * 110.36632 * 323.00796 * 23 17 15 34 34 H 1.09002 * 110.36305 * 85.32520 * 23 17 15 35 35 H 1.07998 * 120.12203 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2015 0.0001 9 16 1.1288 -2.7274 0.0005 10 6 2.4728 -3.8568 -0.1500 11 6 2.9815 -4.1704 -1.4075 12 6 4.0355 -5.0549 -1.5297 13 6 4.5945 -5.6305 -0.4060 14 6 4.0887 -5.3272 0.8597 15 6 4.6832 -5.9463 2.0637 16 8 4.1556 -5.7952 3.1483 17 7 5.8100 -6.6782 1.9586 18 6 6.4910 -7.0273 0.7033 19 6 7.7471 -7.8449 1.0715 20 6 8.0075 -7.4317 2.5468 21 1 8.5567 -6.4915 2.5959 22 9 8.6834 -8.4419 3.2393 23 6 6.5645 -7.2605 3.0834 24 6 3.0255 -4.4340 0.9852 25 1 -0.4850 0.8400 -0.0004 26 1 2.5508 -3.7208 -2.2899 27 1 4.4264 -5.2942 -2.5077 28 1 5.4208 -6.3186 -0.5063 29 1 5.8297 -7.6258 0.0767 30 1 6.7815 -6.1196 0.1742 31 1 7.5459 -8.9138 1.0006 32 1 8.5881 -7.5667 0.4364 33 1 6.5552 -6.5832 3.9375 34 1 6.1455 -8.2278 3.3608 35 1 2.6329 -4.1926 1.9619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335442864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:15 Heat of formation + Delta-G solvation = -57.919567 kcal Electronic energy + Delta-G solvation = -20499.348898 eV Core-core repulsion = 17116.684776 eV Total energy + Delta-G solvation = -3382.664122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.69615 -41.60627 -39.32072 -38.34589 -34.66191 -33.21726 -32.01704 -31.75189 -29.76452 -27.74875 -26.00826 -23.89244 -23.47706 -22.32281 -21.17063 -19.94147 -18.63883 -18.16894 -17.61711 -17.05213 -16.93731 -16.53276 -16.16305 -15.89979 -15.73960 -15.41912 -15.00467 -14.81963 -14.61779 -14.28678 -14.11100 -13.76915 -13.68777 -13.18596 -13.06179 -12.96138 -12.72942 -12.51891 -12.11887 -11.83915 -11.74613 -11.53003 -11.24393 -11.17375 -10.73730 -10.11692 -9.78918 -9.70931 -8.82970 -8.39643 -6.20557 -0.21075 0.23452 1.29212 1.38806 1.45069 1.56667 1.64896 1.77593 2.23703 2.75443 2.93255 3.06837 3.32682 3.40981 3.47447 3.54652 3.86190 3.94168 4.05327 4.12465 4.32655 4.37532 4.43655 4.47644 4.56054 4.65307 4.78691 4.86840 4.92894 5.03218 5.16604 5.25056 5.31031 5.36973 5.49295 5.86378 6.14714 6.20029 6.90638 7.00159 8.67437 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.003427 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.850708 B = 8168.708599 C = 8408.494484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.068 0.932 9 S -0.100 6.100 10 C -0.128 4.128 11 C -0.064 4.064 12 C -0.120 4.120 13 C -0.098 4.098 14 C -0.154 4.154 15 C 0.577 3.423 16 O -0.582 6.582 17 N -0.611 5.611 18 C 0.074 3.926 19 C -0.144 4.144 20 C 0.081 3.919 21 H 0.120 0.880 22 F -0.208 7.208 23 C 0.077 3.923 24 C -0.046 4.046 25 H 0.274 0.726 26 H 0.130 0.870 27 H 0.178 0.822 28 H 0.204 0.796 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.853 -16.448 -3.828 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.684 4.684 8 H 0.086 0.914 9 S 0.135 5.865 10 C -0.239 4.239 11 C -0.085 4.085 12 C -0.139 4.139 13 C -0.115 4.115 14 C -0.159 4.159 15 C 0.368 3.632 16 O -0.463 6.463 17 N -0.344 5.344 18 C -0.046 4.046 19 C -0.181 4.181 20 C 0.044 3.956 21 H 0.138 0.862 22 F -0.189 7.189 23 C -0.047 4.047 24 C -0.068 4.068 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.195 0.805 28 H 0.220 0.780 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.175 -16.410 -3.152 24.690 hybrid contribution 0.800 1.385 0.603 1.709 sum 18.976 -15.025 -2.549 24.338 Atomic orbital electron populations 1.70106 1.07587 1.28908 1.47717 1.26026 0.96057 1.02914 0.93557 0.85076 0.78016 0.76021 0.79389 1.18373 1.19640 1.19475 1.23027 0.94647 0.91470 1.59284 0.91351 1.83550 1.08441 0.98712 1.95795 1.22454 1.02899 1.02530 0.96013 1.22125 0.95241 0.95251 0.95912 1.21645 0.95320 0.96184 1.00792 1.23164 1.00004 0.98695 0.89682 1.19804 0.99562 1.02114 0.94412 1.18133 0.79459 0.77480 0.88151 1.90763 1.62327 1.62700 1.30542 1.48084 1.24606 1.51716 1.09966 1.22986 0.94305 1.01230 0.86086 1.23396 0.98210 1.02250 0.94270 1.22782 0.90154 0.90429 0.92195 0.86209 1.92822 1.81340 1.63271 1.81451 1.22819 0.91570 0.99905 0.90374 1.21599 0.93538 0.93886 0.97756 0.91670 0.85177 0.80457 0.78021 0.87358 0.87570 0.88087 0.85296 0.90726 0.90100 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.76 13.22 21.64 0.29 -54.47 16 2 C 0.02 1.13 5.49 84.84 0.47 1.59 16 3 Si 0.99 44.19 29.55 68.60 2.03 46.21 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.52 9.46 67.94 0.64 -30.87 16 8 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 9 S -0.10 -5.51 21.41 -56.49 -1.21 -6.72 16 10 C -0.13 -5.68 5.45 22.65 0.12 -5.56 16 11 C -0.06 -2.25 9.79 22.48 0.22 -2.03 16 12 C -0.12 -2.83 10.02 22.21 0.22 -2.61 16 13 C -0.10 -2.18 8.59 22.57 0.19 -1.99 16 14 C -0.15 -5.02 5.87 -20.10 -0.12 -5.14 16 15 C 0.58 18.55 7.81 86.79 0.68 19.23 16 16 O -0.58 -24.35 16.67 -3.88 -0.06 -24.42 16 17 N -0.61 -12.81 3.33 -827.29 -2.75 -15.56 16 18 C 0.07 0.72 4.87 86.73 0.42 1.14 16 19 C -0.14 -0.79 6.79 31.87 0.22 -0.58 16 20 C 0.08 0.91 4.86 32.07 0.16 1.07 16 21 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 22 F -0.21 -3.16 17.24 44.97 0.78 -2.38 16 23 C 0.08 1.40 6.70 86.85 0.58 1.98 16 24 C -0.05 -1.95 9.34 22.70 0.21 -1.74 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.20 2.33 2.76 -7.58 -0.02 2.31 16 29 H 0.11 0.70 6.79 -2.39 -0.02 0.68 16 30 H 0.11 0.75 6.67 -2.38 -0.02 0.73 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 4.99 7.67 -2.91 -0.02 4.96 16 Total: -1.00 -80.49 314.54 4.19 -76.31 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.11 Total: 6.53 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 4.02 Total: -25.50 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -2.47 Total: -70.03 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.21 Total: -6.72 kcal Total: -80.49 4.19 -76.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335442864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal (2) G-P(sol) polarization free energy of solvation -80.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds