Wall clock time and date at job start Tue Mar 31 2020 07:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 H 1.09004 * 109.58359 * 54.99234 * 3 2 1 5 5 C 1.53536 * 109.59126 * 175.27693 * 3 2 1 6 6 N 1.47286 * 107.60881 * 178.09450 * 5 3 2 7 7 C 1.34775 * 121.12505 * 137.95186 * 6 5 3 8 8 O 1.21771 * 119.99695 * 175.92030 * 7 6 5 9 9 C 1.41817 * 120.00575 * 355.91679 * 7 6 5 10 10 H 1.07999 * 119.99714 * 335.14479 * 9 7 6 11 11 C 1.40137 * 120.00157 * 155.13487 * 9 7 6 12 12 N 1.30628 * 119.99481 * 184.40196 * 11 9 7 13 13 Si 1.86798 * 119.99852 * 4.40633 * 11 9 7 14 14 H 1.48494 * 109.46958 * 84.46971 * 13 11 9 15 15 H 1.48501 * 109.46736 * 204.47074 * 13 11 9 16 16 H 1.48496 * 109.47147 * 324.46868 * 13 11 9 17 17 C 1.39979 * 117.74076 * 317.97395 * 6 5 3 18 18 C 1.38827 * 120.10076 * 193.80220 * 17 6 5 19 19 C 1.38137 * 119.87987 * 180.17154 * 18 17 6 20 20 C 1.38404 * 120.10656 * 359.96640 * 19 18 17 21 21 C 1.38288 * 120.32097 * 359.95775 * 20 19 18 22 22 Cl 1.73608 * 119.98024 * 179.97438 * 21 20 19 23 23 C 1.38794 * 120.03725 * 0.02562 * 21 20 19 24 24 O 1.36165 * 119.60620 * 180.28830 * 23 21 20 25 25 H 1.09001 * 109.47193 * 60.00720 * 1 2 3 26 26 H 1.09006 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.48107 * 300.00101 * 1 2 3 28 28 H 1.08998 * 109.48107 * 239.99899 * 2 1 3 29 29 H 1.09001 * 109.47193 * 119.99280 * 2 1 3 30 30 H 1.08997 * 109.82943 * 297.62693 * 5 3 2 31 31 H 1.08999 * 109.82326 * 58.50872 * 5 3 2 32 32 H 0.97007 * 119.99742 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.05886 * 0.15566 * 18 17 6 34 34 H 1.08003 * 119.94608 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.83801 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6062 1.9834 0.8412 5 6 3.5707 1.4474 0.1191 6 7 4.0170 2.8501 0.0684 7 6 4.9819 3.3043 0.8925 8 8 5.3875 4.4473 0.7832 9 6 5.5249 2.4513 1.8868 10 1 4.9433 1.6230 2.2639 11 6 6.8160 2.6829 2.3800 12 7 7.3491 1.8485 3.2320 13 14 7.7744 4.1850 1.8190 14 1 7.3897 5.3555 2.6477 15 1 9.2293 3.9284 1.9698 16 1 7.4663 4.4648 0.3936 17 6 3.4048 3.6954 -0.8643 18 6 3.9667 4.9302 -1.1590 19 6 3.3568 5.7622 -2.0776 20 6 2.1879 5.3663 -2.7042 21 6 1.6235 4.1370 -2.4166 22 17 0.1568 3.6495 -3.2072 23 6 2.2284 3.2932 -1.4955 24 8 1.6684 2.0823 -1.2233 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8692 0.9982 1.0663 31 1 4.0076 0.8891 -0.7088 32 1 8.2427 2.0090 3.5736 33 1 4.8789 5.2398 -0.6707 34 1 3.7927 6.7233 -2.3073 35 1 1.7145 6.0204 -3.4213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335746471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:05 Heat of formation + Delta-G solvation = -54.185570 kcal Electronic energy + Delta-G solvation = -21965.755375 eV Core-core repulsion = 18568.836675 eV Total energy + Delta-G solvation = -3396.918699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77023 -38.17417 -37.52608 -36.02768 -34.51754 -33.70911 -33.18882 -30.09513 -29.54938 -28.02601 -26.66266 -24.05974 -23.00922 -21.88114 -20.70458 -19.61496 -17.87029 -17.22103 -16.78157 -16.11827 -15.66999 -15.05697 -14.83434 -14.39191 -14.25667 -13.92444 -13.78409 -13.55512 -13.04622 -12.82100 -12.49356 -12.22691 -12.01154 -11.82273 -11.65596 -11.52325 -11.27274 -11.06654 -10.97400 -10.70446 -10.65766 -10.55699 -10.43345 -9.77961 -9.28105 -9.26327 -8.03377 -7.85197 -7.20180 -6.92745 -5.20655 1.61038 1.67682 2.42606 3.22091 3.29014 3.39175 3.53619 3.73716 3.82302 4.17661 4.30163 4.68906 4.94213 5.09056 5.14555 5.18689 5.30882 5.38575 5.56481 5.60602 5.71656 5.79191 5.93023 5.94089 6.00264 6.04716 6.17579 6.31159 6.35107 6.51771 6.81865 6.94669 7.03726 7.34636 7.57166 7.79385 7.96163 8.32142 8.73392 9.64604 10.06012 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.006201 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.270819 B = 4514.268718 C = 6022.352337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.073 3.927 4 H 0.074 0.926 5 C 0.081 3.919 6 N -0.564 5.564 7 C 0.552 3.448 8 O -0.593 6.593 9 C -0.526 4.526 10 H 0.094 0.906 11 C 0.103 3.897 12 N -0.810 5.810 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.317 1.317 16 H -0.249 1.249 17 C 0.128 3.872 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.041 4.041 22 Cl -0.074 7.074 23 C 0.075 3.925 24 O -0.301 6.301 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.288 0.712 33 H 0.185 0.815 34 H 0.128 0.872 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -0.989 -7.656 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.016 3.984 4 H 0.092 0.908 5 C -0.042 4.042 6 N -0.285 5.285 7 C 0.367 3.633 8 O -0.486 6.486 9 C -0.560 4.560 10 H 0.111 0.889 11 C -0.118 4.118 12 N -0.438 5.438 13 Si 0.790 3.210 14 H -0.199 1.199 15 H -0.248 1.248 16 H -0.174 1.174 17 C 0.029 3.971 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.149 4.149 21 C -0.069 4.069 22 Cl -0.046 7.046 23 C 0.026 3.974 24 O -0.216 6.216 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.201 0.799 34 H 0.146 0.854 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.575 -0.782 -7.626 12.265 hybrid contribution 0.294 0.356 0.024 0.462 sum -9.281 -0.426 -7.602 12.004 Atomic orbital electron populations 1.21715 0.94954 1.01506 1.02478 1.21511 0.96947 0.92995 1.03483 1.22917 0.95089 0.94623 0.85756 0.90781 1.22540 0.92926 0.83369 1.05348 1.45801 1.38946 1.08942 1.34858 1.17090 0.77506 0.87385 0.81308 1.90080 1.61889 1.20823 1.75776 1.19856 1.01778 1.14989 1.19409 0.88858 1.25895 0.97196 0.97174 0.91497 1.69492 1.16229 1.34438 1.23679 0.85374 0.73463 0.79881 0.82303 1.19942 1.24770 1.17431 1.18121 0.91539 0.93439 0.93973 1.22545 1.03258 0.92209 0.97100 1.21017 0.95353 1.00134 0.97290 1.20699 0.97466 0.94307 1.02440 1.19922 0.91226 0.94928 1.00805 1.98316 1.35002 1.92013 1.79236 1.18228 0.91913 0.87577 0.99705 1.86111 1.65953 1.29681 1.39808 0.91867 0.92635 0.92807 0.90660 0.89559 0.86478 0.90815 0.90158 0.79913 0.85412 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.81 37.15 0.36 -1.27 16 2 C -0.11 -1.33 5.66 -26.73 -0.15 -1.48 16 3 C 0.07 1.14 2.95 -26.45 -0.08 1.06 16 4 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 5 C 0.08 1.45 5.78 -3.33 -0.02 1.43 16 6 N -0.56 -12.28 3.00 -115.51 -0.35 -12.63 16 7 C 0.55 13.83 7.03 -14.89 -0.10 13.73 16 8 O -0.59 -15.66 8.81 5.13 0.05 -15.62 16 9 C -0.53 -13.63 9.05 -37.50 -0.34 -13.97 16 10 H 0.09 2.38 6.27 -52.49 -0.33 2.05 16 11 C 0.10 2.71 5.52 -17.35 -0.10 2.62 16 12 N -0.81 -21.17 13.92 55.55 0.77 -20.40 16 13 Si 0.96 23.21 26.15 -169.99 -4.45 18.77 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.32 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.25 -6.31 6.22 56.52 0.35 -5.96 16 17 C 0.13 2.65 6.34 -83.48 -0.53 2.12 16 18 C -0.13 -2.64 9.02 -39.40 -0.36 -3.00 16 19 C -0.12 -1.95 10.04 -39.56 -0.40 -2.35 16 20 C -0.13 -1.99 9.82 -39.50 -0.39 -2.38 16 21 C -0.04 -0.70 6.33 -39.36 -0.25 -0.95 16 22 Cl -0.07 -1.10 28.47 -51.86 -1.48 -2.58 16 23 C 0.07 1.39 6.52 -38.93 -0.25 1.14 16 24 O -0.30 -5.20 8.98 -20.27 -0.18 -5.38 16 25 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 2.08 5.73 -51.93 -0.30 1.78 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.29 6.91 8.29 -40.82 -0.34 6.57 16 33 H 0.18 4.14 4.90 -53.69 -0.26 3.88 16 34 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -28.37 301.64 -7.55 -35.92 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.86 Total: 0.67 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.60 Total: -3.29 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.43 Total: -33.03 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.14 Total: -21.00 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.45 Total: 18.77 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.48 Total: -2.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.37 -7.55 -35.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335746471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.269 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds