Wall clock time and date at job start Tue Mar 31 2020 07:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 H 1.09004 * 109.58359 * 54.99234 * 3 2 1 5 5 C 1.53536 * 109.59126 * 175.27693 * 3 2 1 6 6 N 1.47286 * 107.60881 * 178.09450 * 5 3 2 7 7 C 1.34775 * 121.12505 * 137.95186 * 6 5 3 8 8 O 1.21771 * 119.99695 * 175.92030 * 7 6 5 9 9 C 1.41817 * 120.00575 * 355.91679 * 7 6 5 10 10 H 1.07999 * 119.99714 * 335.14479 * 9 7 6 11 11 C 1.40137 * 120.00157 * 155.13487 * 9 7 6 12 12 N 1.30628 * 119.99481 * 184.40196 * 11 9 7 13 13 Si 1.86798 * 119.99852 * 4.40633 * 11 9 7 14 14 H 1.48494 * 109.46958 * 84.46971 * 13 11 9 15 15 H 1.48501 * 109.46736 * 204.47074 * 13 11 9 16 16 H 1.48496 * 109.47147 * 324.46868 * 13 11 9 17 17 C 1.39979 * 117.74076 * 317.97395 * 6 5 3 18 18 C 1.38827 * 120.10076 * 193.80220 * 17 6 5 19 19 C 1.38137 * 119.87987 * 180.17154 * 18 17 6 20 20 C 1.38404 * 120.10656 * 359.96640 * 19 18 17 21 21 C 1.38288 * 120.32097 * 359.95775 * 20 19 18 22 22 Cl 1.73608 * 119.98024 * 179.97438 * 21 20 19 23 23 C 1.38794 * 120.03725 * 0.02562 * 21 20 19 24 24 O 1.36165 * 119.60620 * 180.28830 * 23 21 20 25 25 H 1.09001 * 109.47193 * 60.00720 * 1 2 3 26 26 H 1.09006 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.48107 * 300.00101 * 1 2 3 28 28 H 1.08998 * 109.48107 * 239.99899 * 2 1 3 29 29 H 1.09001 * 109.47193 * 119.99280 * 2 1 3 30 30 H 1.08997 * 109.82943 * 297.62693 * 5 3 2 31 31 H 1.08999 * 109.82326 * 58.50872 * 5 3 2 32 32 H 0.97007 * 119.99742 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.05886 * 0.15566 * 18 17 6 34 34 H 1.08003 * 119.94608 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.83801 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6062 1.9834 0.8412 5 6 3.5707 1.4474 0.1191 6 7 4.0170 2.8501 0.0684 7 6 4.9819 3.3043 0.8925 8 8 5.3875 4.4473 0.7832 9 6 5.5249 2.4513 1.8868 10 1 4.9433 1.6230 2.2639 11 6 6.8160 2.6829 2.3800 12 7 7.3491 1.8485 3.2320 13 14 7.7744 4.1850 1.8190 14 1 7.3897 5.3555 2.6477 15 1 9.2293 3.9284 1.9698 16 1 7.4663 4.4648 0.3936 17 6 3.4048 3.6954 -0.8643 18 6 3.9667 4.9302 -1.1590 19 6 3.3568 5.7622 -2.0776 20 6 2.1879 5.3663 -2.7042 21 6 1.6235 4.1370 -2.4166 22 17 0.1568 3.6495 -3.2072 23 6 2.2284 3.2932 -1.4955 24 8 1.6684 2.0823 -1.2233 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8692 0.9982 1.0663 31 1 4.0076 0.8891 -0.7088 32 1 8.2427 2.0090 3.5736 33 1 4.8789 5.2398 -0.6707 34 1 3.7927 6.7233 -2.3073 35 1 1.7145 6.0204 -3.4213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335746471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:04 Heat of formation + Delta-G solvation = -70.161631 kcal Electronic energy + Delta-G solvation = -21966.448149 eV Core-core repulsion = 18568.836675 eV Total energy + Delta-G solvation = -3397.611473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25341 -39.88677 -38.86046 -37.33606 -36.12442 -35.20375 -34.83601 -31.55872 -30.84764 -29.61879 -28.34590 -25.36138 -24.50550 -23.12218 -22.17828 -21.13794 -19.25655 -19.04088 -18.42088 -17.71713 -17.20926 -16.69661 -16.20673 -16.01890 -15.64152 -15.31938 -15.13641 -14.74905 -14.54274 -14.35606 -14.22864 -13.93264 -13.41312 -13.18537 -13.08500 -12.88588 -12.77004 -12.60619 -12.34872 -12.02790 -11.88769 -11.81323 -11.71184 -11.63945 -11.26560 -10.81685 -9.80742 -9.33446 -8.93498 -8.75582 -7.20289 0.19360 0.26984 1.10838 1.28179 1.36190 1.56896 1.94007 1.99631 2.19129 2.40813 2.68260 3.15240 3.46407 3.76248 3.79663 3.89376 4.09127 4.28560 4.31124 4.42718 4.47735 4.52805 4.57590 4.70682 4.83508 4.93546 5.06382 5.08780 5.18358 5.27389 5.41883 5.43796 5.57194 5.64384 5.92716 6.03989 6.30595 6.39505 6.85238 7.73628 8.10278 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.006201 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.270819 B = 4514.268718 C = 6022.352337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C 0.078 3.922 4 H 0.065 0.935 5 C 0.079 3.921 6 N -0.573 5.573 7 C 0.550 3.450 8 O -0.613 6.613 9 C -0.544 4.544 10 H 0.089 0.911 11 C 0.076 3.924 12 N -0.830 5.830 13 Si 1.002 2.998 14 H -0.283 1.283 15 H -0.298 1.298 16 H -0.271 1.271 17 C 0.094 3.906 18 C -0.155 4.155 19 C -0.110 4.110 20 C -0.110 4.110 21 C -0.048 4.048 22 Cl -0.052 7.052 23 C 0.070 3.930 24 O -0.301 6.301 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.298 0.702 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 -0.898 -9.171 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C 0.021 3.979 4 H 0.083 0.917 5 C -0.043 4.043 6 N -0.294 5.294 7 C 0.363 3.637 8 O -0.508 6.508 9 C -0.578 4.578 10 H 0.107 0.893 11 C -0.143 4.143 12 N -0.459 5.459 13 Si 0.832 3.168 14 H -0.210 1.210 15 H -0.228 1.228 16 H -0.198 1.198 17 C -0.003 4.003 18 C -0.175 4.175 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.076 4.076 22 Cl -0.024 7.024 23 C 0.021 3.979 24 O -0.215 6.215 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.172 0.828 34 H 0.177 0.823 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.137 -0.714 -9.154 14.434 hybrid contribution 0.639 0.362 0.385 0.829 sum -10.497 -0.352 -8.769 13.683 Atomic orbital electron populations 1.21687 0.93914 1.02790 1.01859 1.21569 0.97731 0.90367 1.04674 1.23041 0.93282 0.96579 0.84955 0.91743 1.22708 0.94696 0.81591 1.05335 1.45636 1.38584 1.10481 1.34671 1.17064 0.78145 0.86956 0.81499 1.90084 1.62857 1.21511 1.76304 1.20007 1.02132 1.15331 1.20356 0.89260 1.26321 0.97843 0.98364 0.91766 1.69486 1.17080 1.35058 1.24250 0.84764 0.73771 0.77947 0.80314 1.20987 1.22752 1.19758 1.18335 0.92950 0.93979 0.95028 1.22383 1.03098 0.93191 0.98838 1.21300 0.95317 1.00577 0.95686 1.21124 0.96361 0.93883 1.01626 1.20184 0.91963 0.95136 1.00311 1.98325 1.33510 1.91940 1.78581 1.18384 0.91469 0.88225 0.99846 1.86118 1.65710 1.29255 1.40437 0.93062 0.90412 0.92826 0.89930 0.87892 0.86904 0.90198 0.89179 0.82780 0.82317 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.81 71.98 0.71 -2.16 16 2 C -0.11 -2.34 5.66 30.59 0.17 -2.16 16 3 C 0.08 2.40 2.95 30.78 0.09 2.49 16 4 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 5 C 0.08 2.85 5.78 86.41 0.50 3.35 16 6 N -0.57 -25.54 3.00 -637.55 -1.91 -27.45 16 7 C 0.55 28.45 7.03 85.13 0.60 29.05 16 8 O -0.61 -33.53 8.81 -4.58 -0.04 -33.57 16 9 C -0.54 -28.94 9.05 23.62 0.21 -28.73 16 10 H 0.09 4.70 6.27 -2.91 -0.02 4.68 16 11 C 0.08 4.05 5.52 85.33 0.47 4.52 16 12 N -0.83 -43.64 13.92 21.85 0.30 -43.34 16 13 Si 1.00 48.65 26.15 68.60 1.79 50.44 16 14 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 15 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.27 -14.06 6.22 99.48 0.62 -13.44 16 17 C 0.09 3.94 6.34 38.27 0.24 4.18 16 18 C -0.15 -6.28 9.02 22.39 0.20 -6.08 16 19 C -0.11 -3.39 10.04 22.29 0.22 -3.16 16 20 C -0.11 -3.04 9.82 22.32 0.22 -2.82 16 21 C -0.05 -1.51 6.33 22.41 0.14 -1.37 16 22 Cl -0.05 -1.41 28.47 -2.72 -0.08 -1.48 16 23 C 0.07 2.53 6.52 22.69 0.15 2.68 16 24 O -0.30 -10.06 8.98 -95.43 -0.86 -10.92 16 25 H 0.05 1.14 7.84 -2.39 -0.02 1.12 16 26 H 0.08 1.20 8.14 -2.38 -0.02 1.19 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.11 4.11 5.73 -2.39 -0.01 4.09 16 31 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.30 14.24 8.29 -92.70 -0.77 13.47 16 33 H 0.16 7.24 4.90 -21.97 -0.11 7.13 16 34 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 35 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -61.79 301.64 4.08 -57.70 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.94 Total: 8.83 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 3.93 Total: -0.21 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.61 Total: -70.79 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.90 Total: -44.49 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.79 Total: 50.44 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.48 kcal Total: -61.79 4.08 -57.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335746471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.460 kcal (2) G-P(sol) polarization free energy of solvation -61.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds