Wall clock time and date at job start Tue Mar 31 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47357 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47249 * 299.99992 * 3 2 1 6 6 H 1.48503 * 109.47096 * 60.00091 * 3 2 1 7 7 C 1.37881 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99607 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00387 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00542 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99265 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00518 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.69628 * 60.55478 * 13 11 10 15 15 C 1.53411 * 109.69957 * 299.99913 * 13 11 10 16 16 O 1.42821 * 108.37637 * 175.53500 * 15 13 11 17 17 C 1.35878 * 117.86331 * 49.17122 * 16 15 13 18 18 C 1.39145 * 118.48008 * 162.99678 * 17 16 15 19 19 C 1.37958 * 120.23003 * 179.76148 * 18 17 16 20 20 C 1.38395 * 119.94619 * 359.94355 * 19 18 17 21 21 Cl 1.73596 * 120.02171 * 179.79260 * 20 19 18 22 22 C 1.38204 * 119.95350 * 0.06480 * 20 19 18 23 23 C 1.38357 * 121.79879 * 342.80854 * 17 16 15 24 24 C 1.50777 * 121.40726 * 0.45837 * 23 17 16 25 25 H 0.96998 * 120.00090 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46568 * 59.99891 * 9 7 2 27 27 H 1.08999 * 109.47129 * 300.00219 * 9 7 2 28 28 H 0.97003 * 120.00300 * 0.02562 * 10 9 7 29 29 H 1.08995 * 109.68351 * 55.80947 * 15 13 11 30 30 H 1.08999 * 109.70957 * 295.27574 * 15 13 11 31 31 H 1.08000 * 119.88089 * 359.74309 * 18 17 16 32 32 H 1.07999 * 120.02807 * 179.97438 * 19 18 17 33 33 H 1.08005 * 119.84581 * 180.02562 * 22 20 19 34 34 H 1.08997 * 109.43336 * 222.12228 * 24 23 17 35 35 H 1.09000 * 109.43249 * 102.25375 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 1.7539 -4.8834 0.0019 12 8 0.5615 -5.1050 0.0029 13 6 2.7332 -6.0287 0.0022 14 1 3.3554 -5.9799 0.8959 15 6 3.6181 -5.9529 -1.2487 16 8 4.6009 -6.9861 -1.1683 17 6 4.1777 -8.2436 -0.8753 18 6 5.0320 -9.3096 -1.1398 19 6 4.6411 -10.6010 -0.8519 20 6 3.3957 -10.8383 -0.2971 21 17 2.8996 -12.4629 0.0609 22 6 2.5450 -9.7815 -0.0334 23 6 2.9322 -8.4835 -0.3226 24 6 1.9742 -7.3577 -0.0260 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 3.1568 -3.4354 0.0010 29 1 4.1097 -4.9811 -1.2922 30 1 3.0074 -6.0956 -2.1402 31 1 6.0044 -9.1254 -1.5722 32 1 5.3066 -11.4260 -1.0590 33 1 1.5736 -9.9687 0.4001 34 1 1.5038 -7.5274 0.9425 35 1 1.2071 -7.3210 -0.7996 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335895736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:27 Heat of formation + Delta-G solvation = -72.536285 kcal Electronic energy + Delta-G solvation = -20521.112482 eV Core-core repulsion = 17123.398036 eV Total energy + Delta-G solvation = -3397.714446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.08309 -39.01564 -37.88622 -36.40945 -34.52073 -34.11585 -32.47335 -30.99640 -30.32531 -27.44815 -25.85788 -24.59314 -22.97026 -22.54687 -20.73206 -19.49764 -18.09139 -17.68361 -16.67871 -16.53376 -15.76352 -15.25112 -15.20388 -14.90688 -14.39499 -14.32789 -13.88241 -13.77045 -13.50880 -13.42094 -12.91606 -12.63681 -12.38505 -12.04223 -11.88403 -11.68643 -11.22042 -11.09528 -10.98565 -10.96571 -10.84150 -10.68985 -10.37996 -9.46219 -9.24769 -9.11849 -8.82506 -8.31412 -8.03126 -6.23620 -4.31076 0.93797 0.97277 1.93264 2.98278 3.12219 3.19310 3.26713 3.29369 3.35529 3.82617 4.28291 4.41617 4.45778 4.53034 4.68566 4.85042 4.97388 5.08726 5.12969 5.16352 5.36512 5.41047 5.53512 5.63305 5.73163 5.84356 5.96147 5.99663 6.13862 6.30431 7.13648 7.19580 7.27085 7.41309 7.56652 7.88323 8.46532 8.66879 8.92454 9.35785 10.86540 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.041337 B = 0.002755 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.192814 B =10161.608886 C =10738.420750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.708 5.708 11 C 0.507 3.493 12 O -0.548 6.548 13 C -0.148 4.148 14 H 0.109 0.891 15 C 0.071 3.929 16 O -0.308 6.308 17 C 0.136 3.864 18 C -0.137 4.137 19 C -0.082 4.082 20 C -0.067 4.067 21 Cl -0.076 7.076 22 C -0.073 4.073 23 C -0.140 4.140 24 C -0.060 4.060 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.391 0.609 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 -19.983 -1.650 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.290 3.710 12 O -0.426 6.426 13 C -0.170 4.170 14 H 0.127 0.873 15 C -0.004 4.004 16 O -0.221 6.221 17 C 0.091 3.909 18 C -0.155 4.155 19 C -0.100 4.100 20 C -0.094 4.094 21 Cl -0.047 7.047 22 C -0.092 4.092 23 C -0.141 4.141 24 C -0.097 4.097 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.224 0.776 29 H 0.136 0.864 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.110 0.890 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.258 -20.038 -1.656 22.135 hybrid contribution 0.572 0.950 0.161 1.121 sum 9.830 -19.087 -1.495 21.522 Atomic orbital electron populations 1.69977 1.06131 1.27317 1.48766 1.24956 0.94922 0.99524 0.94596 0.86354 0.79833 0.82880 0.77811 1.19592 1.20756 1.20755 1.21243 0.93309 0.90361 1.53403 0.91784 1.19158 0.88265 0.81881 0.97908 1.46522 1.11285 1.06060 1.71789 1.19973 0.88966 0.84046 0.78011 1.90683 1.16528 1.84698 1.50736 1.22035 0.98377 0.95646 1.00963 0.87343 1.23041 0.90184 0.90253 0.96909 1.86039 1.36166 1.14630 1.85277 1.18813 0.92666 0.84914 0.94548 1.20527 1.00965 0.89786 1.04258 1.20783 0.94632 0.96769 0.97860 1.20699 0.96329 0.85801 1.06586 1.98360 1.91492 1.21095 1.93730 1.20798 0.99533 0.90096 0.98754 1.19890 0.95644 0.95398 1.03170 1.20326 0.95970 0.88816 1.04604 0.92419 0.95349 0.95384 0.77589 0.86360 0.90711 0.84220 0.84446 0.84533 0.89029 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.24 9.28 -34.44 -0.32 -14.56 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.28 5.43 -5.20 -0.03 6.26 16 10 N -0.71 -13.79 5.43 -61.48 -0.33 -14.12 16 11 C 0.51 9.25 7.16 -10.99 -0.08 9.17 16 12 O -0.55 -12.24 15.81 5.55 0.09 -12.15 16 13 C -0.15 -1.98 2.76 -91.53 -0.25 -2.23 16 14 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.07 0.84 6.25 37.37 0.23 1.07 16 16 O -0.31 -3.70 10.27 -19.36 -0.20 -3.90 16 17 C 0.14 1.59 6.47 -39.20 -0.25 1.34 16 18 C -0.14 -1.34 9.93 -39.35 -0.39 -1.73 16 19 C -0.08 -0.75 9.83 -39.63 -0.39 -1.14 16 20 C -0.07 -0.68 6.32 -39.54 -0.25 -0.93 16 21 Cl -0.08 -0.71 28.96 -51.86 -1.50 -2.21 16 22 C -0.07 -0.78 9.45 -39.49 -0.37 -1.15 16 23 C -0.14 -1.63 5.75 -104.44 -0.60 -2.23 16 24 C -0.06 -0.76 4.66 -27.81 -0.13 -0.89 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.39 6.42 7.72 -40.82 -0.32 6.11 16 29 H 0.12 1.23 7.49 -51.93 -0.39 0.85 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.30 7.71 -51.93 -0.40 0.90 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -30.60 317.05 -8.40 -39.00 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.02 Total: 3.43 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.93 Total: -5.42 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.40 Total: -38.86 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.11 Total: -16.05 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.60 -8.40 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335895736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.538 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds