Wall clock time and date at job start Tue Mar 31 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47357 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47249 * 299.99992 * 3 2 1 6 6 H 1.48503 * 109.47096 * 60.00091 * 3 2 1 7 7 C 1.37881 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99607 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00387 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00542 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99265 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00518 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.69628 * 60.55478 * 13 11 10 15 15 C 1.53411 * 109.69957 * 299.99913 * 13 11 10 16 16 O 1.42821 * 108.37637 * 175.53500 * 15 13 11 17 17 C 1.35878 * 117.86331 * 49.17122 * 16 15 13 18 18 C 1.39145 * 118.48008 * 162.99678 * 17 16 15 19 19 C 1.37958 * 120.23003 * 179.76148 * 18 17 16 20 20 C 1.38395 * 119.94619 * 359.94355 * 19 18 17 21 21 Cl 1.73596 * 120.02171 * 179.79260 * 20 19 18 22 22 C 1.38204 * 119.95350 * 0.06480 * 20 19 18 23 23 C 1.38357 * 121.79879 * 342.80854 * 17 16 15 24 24 C 1.50777 * 121.40726 * 0.45837 * 23 17 16 25 25 H 0.96998 * 120.00090 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46568 * 59.99891 * 9 7 2 27 27 H 1.08999 * 109.47129 * 300.00219 * 9 7 2 28 28 H 0.97003 * 120.00300 * 0.02562 * 10 9 7 29 29 H 1.08995 * 109.68351 * 55.80947 * 15 13 11 30 30 H 1.08999 * 109.70957 * 295.27574 * 15 13 11 31 31 H 1.08000 * 119.88089 * 359.74309 * 18 17 16 32 32 H 1.07999 * 120.02807 * 179.97438 * 19 18 17 33 33 H 1.08005 * 119.84581 * 180.02562 * 22 20 19 34 34 H 1.08997 * 109.43336 * 222.12228 * 24 23 17 35 35 H 1.09000 * 109.43249 * 102.25375 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 1.7539 -4.8834 0.0019 12 8 0.5615 -5.1050 0.0029 13 6 2.7332 -6.0287 0.0022 14 1 3.3554 -5.9799 0.8959 15 6 3.6181 -5.9529 -1.2487 16 8 4.6009 -6.9861 -1.1683 17 6 4.1777 -8.2436 -0.8753 18 6 5.0320 -9.3096 -1.1398 19 6 4.6411 -10.6010 -0.8519 20 6 3.3957 -10.8383 -0.2971 21 17 2.8996 -12.4629 0.0609 22 6 2.5450 -9.7815 -0.0334 23 6 2.9322 -8.4835 -0.3226 24 6 1.9742 -7.3577 -0.0260 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 3.1568 -3.4354 0.0010 29 1 4.1097 -4.9811 -1.2922 30 1 3.0074 -6.0956 -2.1402 31 1 6.0044 -9.1254 -1.5722 32 1 5.3066 -11.4260 -1.0590 33 1 1.5736 -9.9687 0.4001 34 1 1.5038 -7.5274 0.9425 35 1 1.2071 -7.3210 -0.7996 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335895736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:26 Heat of formation + Delta-G solvation = -91.832055 kcal Electronic energy + Delta-G solvation = -20521.949209 eV Core-core repulsion = 17123.398036 eV Total energy + Delta-G solvation = -3398.551173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06086 -40.44535 -38.77615 -37.18777 -36.26221 -35.30190 -34.38327 -32.01289 -31.14774 -29.31780 -26.83233 -25.89098 -24.31884 -23.73023 -22.00290 -20.84988 -19.15177 -18.95458 -17.99141 -17.65057 -17.08901 -16.89791 -16.45624 -16.12985 -15.80413 -15.36761 -15.02030 -14.92593 -14.61025 -14.41372 -14.13836 -14.00319 -13.77762 -13.50527 -13.29866 -12.91267 -12.76526 -12.53223 -12.22821 -12.20687 -11.86652 -11.75116 -11.60369 -11.45421 -10.83310 -10.82662 -9.95517 -9.87931 -9.15378 -8.29803 -6.45899 0.12382 0.17721 1.16036 1.44327 1.44496 1.58034 1.59159 2.10324 2.28641 2.46598 2.57070 3.05836 3.38242 3.48185 3.59770 3.73305 3.88882 4.05119 4.13687 4.31487 4.38927 4.46838 4.53286 4.82380 4.84334 4.92170 4.98903 5.10763 5.20595 5.23430 5.26920 5.45267 5.52098 5.64368 5.83703 6.25806 6.64621 6.81313 7.22112 7.39647 8.82454 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.041337 B = 0.002755 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.192814 B =10161.608886 C =10738.420750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.702 5.702 11 C 0.509 3.491 12 O -0.592 6.592 13 C -0.132 4.132 14 H 0.128 0.872 15 C 0.075 3.925 16 O -0.307 6.307 17 C 0.118 3.882 18 C -0.133 4.133 19 C -0.075 4.075 20 C -0.073 4.073 21 Cl -0.070 7.070 22 C -0.080 4.080 23 C -0.149 4.149 24 C -0.057 4.057 25 H 0.268 0.732 26 H -0.008 1.008 27 H -0.011 1.011 28 H 0.410 0.590 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.131 -20.623 -1.863 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.351 5.351 11 C 0.295 3.705 12 O -0.473 6.473 13 C -0.154 4.154 14 H 0.146 0.854 15 C 0.000 4.000 16 O -0.221 6.221 17 C 0.073 3.927 18 C -0.152 4.152 19 C -0.093 4.093 20 C -0.100 4.100 21 Cl -0.041 7.041 22 C -0.099 4.099 23 C -0.150 4.150 24 C -0.094 4.094 25 H 0.077 0.923 26 H 0.010 0.990 27 H 0.007 0.993 28 H 0.246 0.754 29 H 0.153 0.847 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.159 0.841 34 H 0.107 0.893 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.288 -20.714 -1.869 24.157 hybrid contribution -0.394 1.004 0.231 1.103 sum 11.894 -19.710 -1.638 23.079 Atomic orbital electron populations 1.70134 1.08247 1.28490 1.50085 1.26035 0.95735 1.03848 0.93940 0.85142 0.79201 0.77497 0.77585 1.17528 1.20562 1.20655 1.21647 0.94378 0.90478 1.52661 0.89641 1.18588 0.88667 0.84164 0.94378 1.46216 1.11370 1.05368 1.72185 1.20780 0.89206 0.84544 0.75984 1.90664 1.19010 1.85359 1.52286 1.21927 0.97323 0.93224 1.02914 0.85395 1.23035 0.90138 0.91234 0.95612 1.86047 1.35792 1.14738 1.85477 1.19069 0.93075 0.85244 0.95316 1.20803 1.01452 0.89378 1.03532 1.21102 0.94399 0.97353 0.96448 1.20841 0.96696 0.85921 1.06495 1.98365 1.91521 1.20519 1.93690 1.20889 1.00051 0.90038 0.98895 1.19754 0.95682 0.95199 1.04379 1.20233 0.95981 0.89174 1.04036 0.92279 0.99038 0.99303 0.75413 0.84690 0.90995 0.82120 0.81856 0.84065 0.89258 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.98 41.28 29.54 68.60 2.03 43.31 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -28.97 9.28 25.60 0.24 -28.74 16 8 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 9 C 0.26 13.90 5.43 85.63 0.46 14.37 16 10 N -0.70 -27.50 5.43 -466.82 -2.53 -30.04 16 11 C 0.51 18.86 7.16 87.65 0.63 19.49 16 12 O -0.59 -27.63 15.81 -3.05 -0.05 -27.68 16 13 C -0.13 -3.42 2.76 -11.38 -0.03 -3.45 16 14 H 0.13 2.87 8.14 -2.38 -0.02 2.85 16 15 C 0.08 1.65 6.25 72.12 0.45 2.10 16 16 O -0.31 -6.69 10.27 -92.17 -0.95 -7.64 16 17 C 0.12 2.52 6.47 22.52 0.15 2.67 16 18 C -0.13 -2.23 9.93 22.42 0.22 -2.01 16 19 C -0.07 -1.14 9.83 22.24 0.22 -0.93 16 20 C -0.07 -1.33 6.32 22.30 0.14 -1.19 16 21 Cl -0.07 -1.19 28.96 -2.72 -0.08 -1.27 16 22 C -0.08 -1.63 9.45 22.33 0.21 -1.41 16 23 C -0.15 -3.33 5.75 -19.75 -0.11 -3.44 16 24 C -0.06 -1.45 4.66 29.90 0.14 -1.31 16 25 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.41 12.92 7.72 -92.71 -0.72 12.21 16 29 H 0.14 2.50 7.49 -2.39 -0.02 2.48 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.24 7.71 -2.39 -0.02 2.22 16 Total: -1.00 -67.78 317.05 2.29 -65.49 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.41 Total: 15.73 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 3.18 Total: -3.17 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.25 Total: -84.78 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.99 Total: -35.32 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -67.78 2.29 -65.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335895736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.339 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds