Wall clock time and date at job start Tue Mar 31 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99926 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00307 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00049 * 179.97438 * 11 10 9 14 14 H 1.09003 * 109.69746 * 299.43215 * 13 11 10 15 15 C 1.53412 * 109.70056 * 59.99851 * 13 11 10 16 16 O 1.42823 * 108.38388 * 184.43262 * 15 13 11 17 17 C 1.35869 * 117.87602 * 310.90625 * 16 15 13 18 18 C 1.39136 * 118.48610 * 197.00000 * 17 16 15 19 19 C 1.37962 * 120.23587 * 180.19780 * 18 17 16 20 20 C 1.38397 * 119.94650 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.02271 * 179.97438 * 20 19 18 22 22 C 1.38199 * 119.94905 * 359.93449 * 20 19 18 23 23 C 1.38366 * 121.80080 * 17.04331 * 17 16 15 24 24 C 1.50772 * 121.40877 * 359.66386 * 23 17 16 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 0.96997 * 119.99786 * 359.97438 * 10 9 7 29 29 H 1.08997 * 109.67952 * 304.15589 * 15 13 11 30 30 H 1.09002 * 109.68171 * 64.71203 * 15 13 11 31 31 H 1.08000 * 119.88666 * 0.16716 * 18 17 16 32 32 H 1.08003 * 120.03009 * 179.97438 * 19 18 17 33 33 H 1.08005 * 119.84501 * 180.02562 * 22 20 19 34 34 H 1.09007 * 109.43031 * 257.72474 * 24 23 17 35 35 H 1.08998 * 109.44100 * 137.85351 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 1.7538 -4.8833 -0.0125 12 8 0.5615 -5.1050 -0.0076 13 6 2.7331 -6.0287 -0.0193 14 1 3.3512 -5.9784 -0.9157 15 6 3.6237 -5.9551 1.2277 16 8 4.6057 -6.9886 1.1416 17 6 4.1813 -8.2453 0.8472 18 6 5.0360 -9.3121 1.1063 19 6 4.6434 -10.6028 0.8176 20 6 3.3950 -10.8388 0.2688 21 17 2.8993 -12.4620 -0.0958 22 6 2.5431 -9.7813 0.0121 23 6 2.9326 -8.4839 0.3010 24 6 1.9735 -7.3573 0.0109 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 3.1567 -3.4354 -0.0154 29 1 4.1160 -4.9836 1.2704 30 1 3.0166 -6.0992 2.1215 31 1 6.0105 -9.1292 1.5344 32 1 5.3097 -11.4284 1.0197 33 1 1.5691 -9.9675 -0.4158 34 1 1.2104 -7.3214 0.7884 35 1 1.4981 -7.5254 -0.9555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335895737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:29 Heat of formation + Delta-G solvation = -76.139496 kcal Electronic energy + Delta-G solvation = -20557.714705 eV Core-core repulsion = 17159.844012 eV Total energy + Delta-G solvation = -3397.870693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13997 -39.12835 -37.93923 -36.44355 -34.73621 -34.22175 -32.60961 -31.02320 -30.36702 -27.08215 -25.88085 -24.51861 -23.01050 -22.67333 -20.86267 -19.57480 -18.14036 -17.87045 -16.87775 -16.72349 -16.06051 -15.35319 -15.09509 -14.87182 -14.42206 -13.98654 -13.91104 -13.79279 -13.58845 -13.48831 -13.03715 -12.71263 -12.42647 -12.34648 -12.06145 -11.71582 -11.27722 -11.12236 -11.07258 -10.90592 -10.84440 -10.74156 -10.21143 -9.42467 -9.17094 -8.87628 -8.79260 -8.35460 -8.16703 -6.59279 -4.34021 0.89841 0.93538 1.90014 2.91035 3.02571 3.31083 3.33410 3.34722 3.53825 3.72248 4.35865 4.37357 4.40088 4.47867 4.62223 4.80510 4.90805 5.03370 5.10791 5.19720 5.30096 5.34804 5.45446 5.59148 5.68975 5.77615 5.91197 5.94623 6.08877 6.26348 6.86188 7.08967 7.09788 7.11920 7.52714 8.16082 8.29006 8.61169 8.74549 9.39680 10.80819 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.041206 B = 0.002764 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.352983 B =10126.159613 C =10704.985771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 1.075 2.925 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.626 4.626 8 H 0.058 0.942 9 C 0.239 3.761 10 N -0.704 5.704 11 C 0.507 3.493 12 O -0.549 6.549 13 C -0.148 4.148 14 H 0.109 0.891 15 C 0.072 3.928 16 O -0.307 6.307 17 C 0.136 3.864 18 C -0.136 4.136 19 C -0.081 4.081 20 C -0.067 4.067 21 Cl -0.075 7.075 22 C -0.073 4.073 23 C -0.140 4.140 24 C -0.060 4.060 25 H 0.272 0.728 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.394 0.606 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.635 -20.431 1.587 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.183 4.183 3 Si 0.902 3.098 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.664 4.664 8 H 0.076 0.924 9 C 0.118 3.882 10 N -0.352 5.352 11 C 0.291 3.709 12 O -0.427 6.427 13 C -0.170 4.170 14 H 0.127 0.873 15 C -0.004 4.004 16 O -0.220 6.220 17 C 0.090 3.910 18 C -0.155 4.155 19 C -0.100 4.100 20 C -0.094 4.094 21 Cl -0.046 7.046 22 C -0.092 4.092 23 C -0.142 4.142 24 C -0.097 4.097 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.227 0.773 29 H 0.136 0.864 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.698 -18.965 1.596 21.361 hybrid contribution 0.395 -1.713 -0.167 1.766 sum 10.093 -20.678 1.429 23.054 Atomic orbital electron populations 1.70771 1.06891 1.31065 1.44716 1.25890 0.96396 1.02789 0.93182 0.83450 0.74838 0.74844 0.76639 1.20511 1.21220 1.21227 1.22044 0.94578 0.91431 1.58333 0.92399 1.19218 0.88971 0.83417 0.96621 1.46335 1.11222 1.05737 1.71865 1.20032 0.89025 0.84059 0.77797 1.90677 1.16577 1.84730 1.50758 1.22028 0.98292 0.95525 1.01115 0.87255 1.23034 0.90173 0.90303 0.96844 1.86039 1.36065 1.14691 1.85251 1.18812 0.92652 0.84907 0.94601 1.20529 1.00961 0.89765 1.04229 1.20793 0.94589 0.96785 0.97823 1.20701 0.96266 0.85858 1.06562 1.98361 1.91507 1.21171 1.93560 1.20793 0.99559 0.90078 0.98736 1.19873 0.95566 0.95381 1.03339 1.20324 0.95962 0.88778 1.04631 0.91697 0.96357 0.96384 0.77295 0.86383 0.90709 0.84180 0.84394 0.84530 0.88727 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.65 55.43 0.76 -25.92 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 23.79 29.90 -169.99 -5.08 18.71 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.63 -16.61 9.28 -34.44 -0.32 -16.93 16 8 H 0.06 1.45 7.60 -52.49 -0.40 1.05 16 9 C 0.24 6.03 4.74 -5.19 -0.02 6.00 16 10 N -0.70 -13.81 5.43 -61.47 -0.33 -14.14 16 11 C 0.51 9.25 7.16 -10.99 -0.08 9.17 16 12 O -0.55 -12.15 15.80 5.56 0.09 -12.06 16 13 C -0.15 -1.97 2.76 -91.52 -0.25 -2.22 16 14 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.07 0.85 6.25 37.37 0.23 1.08 16 16 O -0.31 -3.68 10.27 -19.33 -0.20 -3.88 16 17 C 0.14 1.58 6.47 -39.20 -0.25 1.32 16 18 C -0.14 -1.33 9.93 -39.35 -0.39 -1.72 16 19 C -0.08 -0.73 9.83 -39.62 -0.39 -1.12 16 20 C -0.07 -0.67 6.32 -39.54 -0.25 -0.92 16 21 Cl -0.07 -0.70 28.96 -51.86 -1.50 -2.20 16 22 C -0.07 -0.77 9.45 -39.50 -0.37 -1.15 16 23 C -0.14 -1.63 5.75 -104.44 -0.60 -2.23 16 24 C -0.06 -0.76 4.65 -27.81 -0.13 -0.89 16 25 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 26 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 27 H 0.02 0.50 8.00 -51.93 -0.42 0.09 16 28 H 0.39 6.61 7.72 -40.82 -0.32 6.29 16 29 H 0.12 1.24 7.50 -51.93 -0.39 0.85 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.09 1.29 7.71 -51.92 -0.40 0.89 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 315.74 15.07 4.76 4.76 Total: -1.00 -31.18 315.74 -8.40 -39.59 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.96 Total: 4.21 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.93 Total: -9.05 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.42 Total: -40.07 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.11 Total: -15.95 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.08 Total: 18.71 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.18 -8.40 -39.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335895737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.553 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds