Wall clock time and date at job start Tue Mar 31 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99926 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00307 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00049 * 179.97438 * 11 10 9 14 14 H 1.09003 * 109.69746 * 299.43215 * 13 11 10 15 15 C 1.53412 * 109.70056 * 59.99851 * 13 11 10 16 16 O 1.42823 * 108.38388 * 184.43262 * 15 13 11 17 17 C 1.35869 * 117.87602 * 310.90625 * 16 15 13 18 18 C 1.39136 * 118.48610 * 197.00000 * 17 16 15 19 19 C 1.37962 * 120.23587 * 180.19780 * 18 17 16 20 20 C 1.38397 * 119.94650 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.02271 * 179.97438 * 20 19 18 22 22 C 1.38199 * 119.94905 * 359.93449 * 20 19 18 23 23 C 1.38366 * 121.80080 * 17.04331 * 17 16 15 24 24 C 1.50772 * 121.40877 * 359.66386 * 23 17 16 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 0.96997 * 119.99786 * 359.97438 * 10 9 7 29 29 H 1.08997 * 109.67952 * 304.15589 * 15 13 11 30 30 H 1.09002 * 109.68171 * 64.71203 * 15 13 11 31 31 H 1.08000 * 119.88666 * 0.16716 * 18 17 16 32 32 H 1.08003 * 120.03009 * 179.97438 * 19 18 17 33 33 H 1.08005 * 119.84501 * 180.02562 * 22 20 19 34 34 H 1.09007 * 109.43031 * 257.72474 * 24 23 17 35 35 H 1.08998 * 109.44100 * 137.85351 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 1.7538 -4.8833 -0.0125 12 8 0.5615 -5.1050 -0.0076 13 6 2.7331 -6.0287 -0.0193 14 1 3.3512 -5.9784 -0.9157 15 6 3.6237 -5.9551 1.2277 16 8 4.6057 -6.9886 1.1416 17 6 4.1813 -8.2453 0.8472 18 6 5.0360 -9.3121 1.1063 19 6 4.6434 -10.6028 0.8176 20 6 3.3950 -10.8388 0.2688 21 17 2.8993 -12.4620 -0.0958 22 6 2.5431 -9.7813 0.0121 23 6 2.9326 -8.4839 0.3010 24 6 1.9735 -7.3573 0.0109 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 3.1567 -3.4354 -0.0154 29 1 4.1160 -4.9836 1.2704 30 1 3.0166 -6.0992 2.1215 31 1 6.0105 -9.1292 1.5344 32 1 5.3097 -11.4284 1.0197 33 1 1.5691 -9.9675 -0.4158 34 1 1.2104 -7.3214 0.7884 35 1 1.4981 -7.5254 -0.9555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335895737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:28 Heat of formation + Delta-G solvation = -95.909729 kcal Electronic energy + Delta-G solvation = -20558.572006 eV Core-core repulsion = 17159.844012 eV Total energy + Delta-G solvation = -3398.727995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.12219 -40.55707 -38.81814 -37.21518 -36.55710 -35.37001 -34.51032 -32.02959 -31.18345 -28.93129 -26.86310 -25.84839 -24.51928 -23.77417 -22.10904 -20.91921 -19.49485 -19.00253 -18.34555 -17.72527 -17.15321 -16.67079 -16.53706 -15.97132 -15.60433 -15.44088 -15.11258 -14.99193 -14.69889 -14.59588 -14.41301 -14.06707 -13.92046 -13.53726 -13.35329 -13.11209 -12.58170 -12.54153 -12.26606 -11.92911 -11.90445 -11.79373 -11.64904 -11.07540 -10.85719 -10.77447 -10.05692 -9.96655 -9.18813 -8.79912 -6.56081 0.09056 0.14639 1.13465 1.47030 1.56569 1.64660 1.83300 2.04167 2.24933 2.51752 2.57098 3.07659 3.31064 3.41605 3.53348 3.68430 3.81578 3.99810 4.08370 4.27618 4.33167 4.40843 4.47998 4.76176 4.76957 4.80801 4.88533 4.93399 4.94611 5.17658 5.22847 5.34964 5.48779 5.51980 6.05953 6.21642 6.30482 6.67851 7.15266 7.33753 8.59656 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.041206 B = 0.002764 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.352983 B =10126.159613 C =10704.985771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.032 4.032 3 Si 1.128 2.872 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.630 4.630 8 H 0.078 0.922 9 C 0.252 3.748 10 N -0.698 5.698 11 C 0.509 3.491 12 O -0.591 6.591 13 C -0.132 4.132 14 H 0.129 0.871 15 C 0.076 3.924 16 O -0.307 6.307 17 C 0.118 3.882 18 C -0.133 4.133 19 C -0.074 4.074 20 C -0.072 4.072 21 Cl -0.069 7.069 22 C -0.080 4.080 23 C -0.149 4.149 24 C -0.057 4.057 25 H 0.254 0.746 26 H -0.012 1.012 27 H -0.015 1.015 28 H 0.411 0.589 29 H 0.134 0.866 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.658 -21.249 1.786 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.231 4.231 3 Si 0.947 3.053 4 H -0.214 1.214 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.667 4.667 8 H 0.096 0.904 9 C 0.128 3.872 10 N -0.348 5.348 11 C 0.296 3.704 12 O -0.472 6.472 13 C -0.153 4.153 14 H 0.147 0.853 15 C 0.000 4.000 16 O -0.220 6.220 17 C 0.072 3.928 18 C -0.151 4.151 19 C -0.092 4.092 20 C -0.099 4.099 21 Cl -0.040 7.040 22 C -0.099 4.099 23 C -0.151 4.151 24 C -0.094 4.094 25 H 0.064 0.936 26 H 0.005 0.995 27 H 0.003 0.997 28 H 0.247 0.753 29 H 0.152 0.848 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.160 0.840 34 H 0.097 0.903 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.769 -19.836 1.796 23.659 hybrid contribution -0.567 -1.617 -0.234 1.730 sum 12.202 -21.454 1.562 24.730 Atomic orbital electron populations 1.70913 1.08320 1.29999 1.47431 1.27596 0.96319 1.07138 0.92005 0.82813 0.73951 0.70112 0.78431 1.21391 1.18721 1.18882 1.22429 0.95665 0.91666 1.56949 0.90385 1.18717 0.89350 0.85416 0.93670 1.46067 1.11246 1.05113 1.72359 1.20840 0.89295 0.84486 0.75795 1.90660 1.18968 1.85342 1.52207 1.21931 0.97248 0.93138 1.03023 0.85346 1.23022 0.90119 0.91254 0.95584 1.86047 1.35686 1.14810 1.85462 1.19070 0.93074 0.85221 0.95392 1.20805 1.01455 0.89357 1.03498 1.21113 0.94364 0.97365 0.96398 1.20843 0.96633 0.85976 1.06458 1.98366 1.91536 1.20598 1.93517 1.20885 1.00085 0.90012 0.98870 1.19739 0.95593 0.95190 1.04546 1.20233 0.95976 0.89093 1.04085 0.93622 0.99456 0.99723 0.75273 0.84817 0.90981 0.82087 0.81794 0.84045 0.90320 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.65 21.45 0.29 -56.41 16 2 C -0.03 -1.75 5.46 84.65 0.46 -1.29 16 3 Si 1.13 46.75 29.90 68.60 2.05 48.80 16 4 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.63 -33.33 9.28 25.60 0.24 -33.09 16 8 H 0.08 3.75 7.60 -2.91 -0.02 3.72 16 9 C 0.25 13.12 4.74 85.64 0.41 13.52 16 10 N -0.70 -27.45 5.43 -466.79 -2.53 -29.98 16 11 C 0.51 18.77 7.16 87.66 0.63 19.40 16 12 O -0.59 -27.19 15.80 -3.03 -0.05 -27.24 16 13 C -0.13 -3.39 2.76 -11.38 -0.03 -3.42 16 14 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 15 C 0.08 1.66 6.25 72.12 0.45 2.11 16 16 O -0.31 -6.66 10.27 -92.08 -0.95 -7.60 16 17 C 0.12 2.49 6.47 22.52 0.15 2.64 16 18 C -0.13 -2.20 9.93 22.42 0.22 -1.98 16 19 C -0.07 -1.12 9.83 22.24 0.22 -0.90 16 20 C -0.07 -1.30 6.32 22.30 0.14 -1.16 16 21 Cl -0.07 -1.16 28.96 -2.72 -0.08 -1.24 16 22 C -0.08 -1.60 9.45 22.32 0.21 -1.39 16 23 C -0.15 -3.31 5.75 -19.75 -0.11 -3.42 16 24 C -0.06 -1.42 4.65 29.89 0.14 -1.28 16 25 H 0.25 16.04 7.22 -92.71 -0.67 15.37 16 26 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 27 H -0.02 -0.88 8.00 -2.39 -0.02 -0.90 16 28 H 0.41 13.20 7.72 -92.71 -0.72 12.49 16 29 H 0.13 2.50 7.50 -2.39 -0.02 2.48 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.08 2.22 7.71 -2.38 -0.02 2.20 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -68.90 315.74 2.37 -66.53 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.51 Total: 17.42 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 3.12 Total: -10.27 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -2.24 Total: -86.40 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.99 Total: -34.84 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.05 Total: 48.80 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -68.90 2.37 -66.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335895737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.379 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds