Wall clock time and date at job start Tue Mar 31 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37984 * 120.06331 * 2 1 4 4 C 1.38315 * 120.16074 * 180.29806 * 3 2 1 5 5 C 1.38491 * 120.27956 * 359.71896 * 4 3 2 6 6 Cl 1.73602 * 119.94312 * 179.97438 * 5 4 3 7 7 C 1.38062 * 120.11923 * 0.02562 * 5 4 3 8 8 C 1.39562 * 120.05565 * 179.76566 * 2 1 3 9 9 C 1.47841 * 120.14340 * 359.97346 * 8 2 1 10 10 O 1.21556 * 119.99664 * 322.52893 * 9 8 2 11 11 N 1.34769 * 120.00153 * 142.52549 * 9 8 2 12 12 C 1.47067 * 136.05967 * 354.52034 * 11 9 8 13 13 C 1.53759 * 87.89045 * 152.96239 * 12 11 9 14 14 O 1.42901 * 114.39654 * 272.68009 * 13 12 11 15 15 C 1.50701 * 114.26439 * 139.79211 * 13 12 11 16 16 H 1.08000 * 120.00086 * 266.47698 * 15 13 12 17 17 C 1.37876 * 120.00008 * 86.48116 * 15 13 12 18 18 N 1.31506 * 120.00184 * 180.02562 * 17 15 13 19 19 Si 1.86807 * 119.99748 * 359.97438 * 17 15 13 20 20 H 1.48510 * 109.46682 * 90.00144 * 19 17 15 21 21 H 1.48498 * 109.47034 * 209.99755 * 19 17 15 22 22 H 1.48498 * 109.47181 * 330.00566 * 19 17 15 23 23 C 1.47067 * 136.05819 * 174.89458 * 11 9 8 24 24 H 1.09002 * 109.46739 * 264.31875 * 1 2 3 25 25 H 1.08998 * 109.46971 * 24.31988 * 1 2 3 26 26 H 1.08999 * 109.46800 * 144.32324 * 1 2 3 27 27 H 1.07996 * 119.91746 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.86044 * 179.69555 * 4 3 2 29 29 H 1.08000 * 120.08067 * 179.97438 * 7 5 4 30 30 H 1.08994 * 113.46999 * 267.69796 * 12 11 9 31 31 H 1.09010 * 113.46273 * 38.13729 * 12 11 9 32 32 H 0.96695 * 113.99862 * 273.58044 * 14 13 12 33 33 H 0.97000 * 120.00072 * 180.02562 * 18 17 15 34 34 H 1.09004 * 113.47153 * 321.86490 * 23 11 9 35 35 H 1.09002 * 113.47289 * 92.24735 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1942 0.0000 4 6 3.5814 1.1966 -0.0062 5 6 4.2817 0.0018 -0.0066 6 17 6.0177 0.0150 -0.0151 7 6 3.6018 -1.1998 -0.0013 8 6 2.2060 -1.2080 0.0049 9 6 1.4713 -2.4908 0.0108 10 8 0.4445 -2.6002 0.6521 11 7 1.9398 -3.5390 -0.6950 12 6 3.0434 -3.7718 -1.6388 13 6 3.0399 -5.2430 -1.1918 14 8 3.8515 -5.5141 -0.0473 15 6 3.2405 -6.2310 -2.3119 16 1 2.3854 -6.6663 -2.8077 17 6 4.5157 -6.5793 -2.7038 18 7 4.6908 -7.4411 -3.6816 19 14 5.9947 -5.8260 -1.8467 20 1 6.3845 -6.6763 -0.6932 21 1 7.1284 -5.7375 -2.8018 22 1 5.6470 -4.4655 -1.3635 23 6 1.5686 -4.9518 -0.8654 24 1 -0.3633 -0.1017 1.0227 25 1 -0.3633 0.9365 -0.4232 26 1 -0.3633 -0.8348 -0.5994 27 1 1.6580 2.1293 -0.0004 28 1 4.1175 2.1341 -0.0112 29 1 4.1486 -2.1312 -0.0021 30 1 2.7588 -3.6344 -2.6819 31 1 3.9579 -3.2393 -1.3771 32 1 4.7777 -5.6971 -0.2564 33 1 5.5879 -7.6865 -3.9570 34 1 1.2264 -5.4248 0.0552 35 1 0.8943 -5.1254 -1.7041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335974102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:52 Heat of formation + Delta-G solvation = -11.000805 kcal Electronic energy + Delta-G solvation = -21600.993700 eV Core-core repulsion = 18205.947633 eV Total energy + Delta-G solvation = -3395.046067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45366 -39.14752 -37.55836 -36.51119 -34.68093 -32.62543 -32.55615 -31.66760 -28.97583 -27.00726 -25.67046 -25.39893 -23.56546 -21.74016 -20.40665 -19.02499 -17.69881 -17.04666 -16.53340 -16.33249 -15.87409 -15.49892 -14.73533 -14.57278 -14.06843 -13.80842 -13.68107 -13.53263 -13.12045 -12.91603 -12.81490 -12.52914 -12.38803 -12.12567 -11.78624 -11.59495 -11.26040 -11.17933 -11.10741 -10.91048 -10.61291 -10.16766 -9.87386 -9.34290 -9.20510 -9.10165 -8.73001 -8.68247 -8.13320 -6.47660 -4.54096 0.76596 1.03143 1.99216 2.89487 2.95488 2.98021 3.11665 3.22377 3.64334 3.97745 4.47553 4.58015 4.66253 4.73812 4.91020 5.01046 5.09059 5.36272 5.45468 5.53866 5.64466 5.69021 5.90504 5.94341 5.96926 6.05227 6.09354 6.16534 6.29407 6.29804 6.44631 6.53052 6.57985 7.12093 7.94874 8.16649 8.41976 8.47417 8.56211 9.09520 10.64338 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.006106 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.444696 B = 4584.522395 C = 5999.925998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.031 4.031 3 C -0.118 4.118 4 C -0.090 4.090 5 C -0.049 4.049 6 Cl -0.069 7.069 7 C -0.073 4.073 8 C -0.107 4.107 9 C 0.582 3.418 10 O -0.545 6.545 11 N -0.630 5.630 12 C 0.057 3.943 13 C 0.196 3.804 14 O -0.550 6.550 15 C -0.534 4.534 16 H 0.094 0.906 17 C 0.082 3.918 18 N -0.873 5.873 19 Si 0.857 3.143 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.257 1.257 23 C 0.124 3.876 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.352 0.648 33 H 0.272 0.728 34 H 0.074 0.926 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 16.217 4.594 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.032 4.032 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.075 4.075 6 Cl -0.040 7.040 7 C -0.093 4.093 8 C -0.110 4.110 9 C 0.371 3.629 10 O -0.425 6.425 11 N -0.363 5.363 12 C -0.066 4.066 13 C 0.155 3.845 14 O -0.361 6.361 15 C -0.571 4.571 16 H 0.112 0.888 17 C -0.124 4.124 18 N -0.508 5.508 19 Si 0.685 3.315 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.183 1.183 23 C 0.002 3.998 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.161 0.839 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.205 0.795 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.679 16.302 5.218 17.199 hybrid contribution 1.796 0.284 -0.015 1.818 sum 0.117 16.586 5.203 17.384 Atomic orbital electron populations 1.20853 0.89774 1.02517 1.03723 1.20075 0.97039 0.91337 0.94710 1.20936 0.93169 0.97736 1.01810 1.21161 0.94229 0.96833 0.98634 1.20775 0.84857 0.94856 1.07023 1.98376 1.09639 1.98930 1.97027 1.21438 0.93311 0.97827 0.96677 1.19808 0.92801 0.93720 1.04705 1.17540 0.83730 0.81786 0.79811 1.90742 1.24005 1.83031 1.44747 1.49624 1.32940 1.10627 1.43090 1.24697 0.88573 0.99689 0.93683 1.20285 0.88540 0.90600 0.85047 1.86471 1.22713 1.92475 1.34450 1.21118 0.95014 1.25019 1.15998 0.88835 1.24991 0.98764 0.94115 0.94540 1.69838 1.23138 1.31072 1.26791 0.87360 0.83538 0.80636 0.79951 1.19171 1.20851 1.18279 1.23189 0.97798 0.77467 1.01363 0.89930 0.91734 0.90649 0.84485 0.84635 0.83893 0.88485 0.91570 0.79509 0.91777 0.90746 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 8.67 36.01 0.31 -1.06 16 2 C -0.03 -0.41 5.91 -104.22 -0.62 -1.03 16 3 C -0.12 -1.28 9.66 -39.65 -0.38 -1.66 16 4 C -0.09 -0.99 9.82 -39.46 -0.39 -1.38 16 5 C -0.05 -0.65 6.31 -39.55 -0.25 -0.90 16 6 Cl -0.07 -0.87 28.95 -51.86 -1.50 -2.37 16 7 C -0.07 -1.14 8.53 -39.14 -0.33 -1.48 16 8 C -0.11 -1.74 5.72 -104.97 -0.60 -2.35 16 9 C 0.58 11.18 7.11 -12.33 -0.09 11.09 16 10 O -0.55 -11.49 15.75 5.32 0.08 -11.40 16 11 N -0.63 -12.40 3.63 -186.17 -0.68 -13.08 16 12 C 0.06 1.11 6.73 -8.38 -0.06 1.06 16 13 C 0.20 4.36 1.10 -91.12 -0.10 4.26 16 14 O -0.55 -12.64 13.33 -35.23 -0.47 -13.11 16 15 C -0.53 -13.41 9.28 -34.44 -0.32 -13.73 16 16 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 17 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.87 -23.97 13.96 55.43 0.77 -23.20 16 19 Si 0.86 18.65 24.42 -169.99 -4.15 14.50 16 20 H -0.27 -5.64 7.06 56.52 0.40 -5.24 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.26 -5.25 5.50 56.52 0.31 -4.94 16 23 C 0.12 2.50 8.02 -8.51 -0.07 2.43 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 26 H 0.07 1.07 6.80 -51.93 -0.35 0.72 16 27 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.14 2.41 6.04 -52.49 -0.32 2.09 16 30 H 0.10 1.82 8.10 -51.93 -0.42 1.40 16 31 H 0.07 1.26 4.79 -51.92 -0.25 1.01 16 32 H 0.35 7.78 3.16 45.56 0.14 7.92 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.10 1.80 8.10 -51.93 -0.42 1.38 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -28.63 305.84 -7.70 -36.32 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -3.38 Total: 10.48 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.99 Total: -2.74 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.10 Total: -36.28 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.39 Total: -24.52 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.15 Total: 14.50 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.63 -7.70 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335974102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.320 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds