Wall clock time and date at job start Tue Mar 31 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37984 * 120.06331 * 2 1 4 4 C 1.38315 * 120.16074 * 180.29806 * 3 2 1 5 5 C 1.38491 * 120.27956 * 359.71896 * 4 3 2 6 6 Cl 1.73602 * 119.94312 * 179.97438 * 5 4 3 7 7 C 1.38062 * 120.11923 * 0.02562 * 5 4 3 8 8 C 1.39562 * 120.05565 * 179.76566 * 2 1 3 9 9 C 1.47841 * 120.14340 * 359.97346 * 8 2 1 10 10 O 1.21556 * 119.99664 * 322.52893 * 9 8 2 11 11 N 1.34769 * 120.00153 * 142.52549 * 9 8 2 12 12 C 1.47067 * 136.05967 * 354.52034 * 11 9 8 13 13 C 1.53759 * 87.89045 * 152.96239 * 12 11 9 14 14 O 1.42901 * 114.39654 * 272.68009 * 13 12 11 15 15 C 1.50701 * 114.26439 * 139.79211 * 13 12 11 16 16 H 1.08000 * 120.00086 * 266.47698 * 15 13 12 17 17 C 1.37876 * 120.00008 * 86.48116 * 15 13 12 18 18 N 1.31506 * 120.00184 * 180.02562 * 17 15 13 19 19 Si 1.86807 * 119.99748 * 359.97438 * 17 15 13 20 20 H 1.48510 * 109.46682 * 90.00144 * 19 17 15 21 21 H 1.48498 * 109.47034 * 209.99755 * 19 17 15 22 22 H 1.48498 * 109.47181 * 330.00566 * 19 17 15 23 23 C 1.47067 * 136.05819 * 174.89458 * 11 9 8 24 24 H 1.09002 * 109.46739 * 264.31875 * 1 2 3 25 25 H 1.08998 * 109.46971 * 24.31988 * 1 2 3 26 26 H 1.08999 * 109.46800 * 144.32324 * 1 2 3 27 27 H 1.07996 * 119.91746 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.86044 * 179.69555 * 4 3 2 29 29 H 1.08000 * 120.08067 * 179.97438 * 7 5 4 30 30 H 1.08994 * 113.46999 * 267.69796 * 12 11 9 31 31 H 1.09010 * 113.46273 * 38.13729 * 12 11 9 32 32 H 0.96695 * 113.99862 * 273.58044 * 14 13 12 33 33 H 0.97000 * 120.00072 * 180.02562 * 18 17 15 34 34 H 1.09004 * 113.47153 * 321.86490 * 23 11 9 35 35 H 1.09002 * 113.47289 * 92.24735 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1942 0.0000 4 6 3.5814 1.1966 -0.0062 5 6 4.2817 0.0018 -0.0066 6 17 6.0177 0.0150 -0.0151 7 6 3.6018 -1.1998 -0.0013 8 6 2.2060 -1.2080 0.0049 9 6 1.4713 -2.4908 0.0108 10 8 0.4445 -2.6002 0.6521 11 7 1.9398 -3.5390 -0.6950 12 6 3.0434 -3.7718 -1.6388 13 6 3.0399 -5.2430 -1.1918 14 8 3.8515 -5.5141 -0.0473 15 6 3.2405 -6.2310 -2.3119 16 1 2.3854 -6.6663 -2.8077 17 6 4.5157 -6.5793 -2.7038 18 7 4.6908 -7.4411 -3.6816 19 14 5.9947 -5.8260 -1.8467 20 1 6.3845 -6.6763 -0.6932 21 1 7.1284 -5.7375 -2.8018 22 1 5.6470 -4.4655 -1.3635 23 6 1.5686 -4.9518 -0.8654 24 1 -0.3633 -0.1017 1.0227 25 1 -0.3633 0.9365 -0.4232 26 1 -0.3633 -0.8348 -0.5994 27 1 1.6580 2.1293 -0.0004 28 1 4.1175 2.1341 -0.0112 29 1 4.1486 -2.1312 -0.0021 30 1 2.7588 -3.6344 -2.6819 31 1 3.9579 -3.2393 -1.3771 32 1 4.7777 -5.6971 -0.2564 33 1 5.5879 -7.6865 -3.9570 34 1 1.2264 -5.4248 0.0552 35 1 0.8943 -5.1254 -1.7041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335974102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:52 Heat of formation + Delta-G solvation = -30.302601 kcal Electronic energy + Delta-G solvation = -21601.830689 eV Core-core repulsion = 18205.947633 eV Total energy + Delta-G solvation = -3395.883056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.87280 -40.46436 -39.00483 -37.52533 -36.43013 -34.58533 -33.57204 -32.80271 -30.56521 -28.17208 -27.26734 -27.05903 -24.73713 -22.86385 -21.95856 -20.49710 -19.49591 -18.54832 -18.18564 -17.69412 -16.98833 -16.88571 -16.10918 -15.79837 -15.63760 -15.30570 -15.11742 -14.72207 -14.60819 -14.45953 -14.09970 -13.89273 -13.86109 -13.37776 -12.95509 -12.82152 -12.69007 -12.48633 -12.40303 -12.23947 -12.06288 -11.96577 -11.50143 -11.12425 -10.90890 -10.53243 -10.21007 -9.79282 -9.62060 -8.46045 -6.57703 -0.29148 0.03402 1.00283 1.21052 1.24621 1.36183 1.56084 1.78549 2.13146 2.51393 2.71385 3.11706 3.33471 3.61390 3.76396 3.78195 3.93765 4.12164 4.28009 4.35615 4.40712 4.53831 4.57278 4.64294 4.68785 4.75183 4.81536 4.85882 4.95106 5.06696 5.16285 5.22850 5.39199 5.63653 5.99189 6.50526 6.59759 6.65206 6.94716 7.10186 8.69138 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.006106 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.444696 B = 4584.522395 C = 5999.925998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.036 4.036 3 C -0.101 4.101 4 C -0.074 4.074 5 C -0.056 4.056 6 Cl -0.065 7.065 7 C -0.088 4.088 8 C -0.134 4.134 9 C 0.579 3.421 10 O -0.571 6.571 11 N -0.633 5.633 12 C 0.071 3.929 13 C 0.186 3.814 14 O -0.557 6.557 15 C -0.539 4.539 16 H 0.063 0.937 17 C 0.033 3.967 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.255 1.255 21 H -0.280 1.280 22 H -0.236 1.236 23 C 0.122 3.878 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.181 0.819 28 H 0.171 0.829 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.355 0.645 33 H 0.275 0.725 34 H 0.069 0.931 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 19.894 5.357 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.037 4.037 3 C -0.119 4.119 4 C -0.093 4.093 5 C -0.082 4.082 6 Cl -0.036 7.036 7 C -0.107 4.107 8 C -0.138 4.138 9 C 0.371 3.629 10 O -0.453 6.453 11 N -0.365 5.365 12 C -0.051 4.051 13 C 0.145 3.855 14 O -0.369 6.369 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.169 4.169 18 N -0.556 5.556 19 Si 0.735 3.265 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.161 1.161 23 C 0.000 4.000 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.067 0.933 27 H 0.198 0.802 28 H 0.189 0.811 29 H 0.142 0.858 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.208 0.792 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.933 19.992 5.991 20.891 hybrid contribution 1.483 -0.838 -0.246 1.721 sum 0.550 19.154 5.744 20.004 Atomic orbital electron populations 1.20847 0.89187 1.03384 1.03153 1.20346 0.97648 0.91358 0.94385 1.21384 0.93151 0.98150 0.99229 1.21610 0.94481 0.97206 0.95970 1.20896 0.85162 0.94981 1.07180 1.98378 1.09315 1.98918 1.97018 1.21265 0.93030 0.98127 0.98289 1.19660 0.93118 0.93002 1.07975 1.18113 0.83550 0.82533 0.78716 1.90713 1.25336 1.83641 1.45600 1.49605 1.32967 1.10502 1.43462 1.24449 0.89189 0.97457 0.94051 1.20297 0.89660 0.91402 0.84150 1.86467 1.23074 1.92665 1.34663 1.21221 0.94295 1.25584 1.16567 0.91877 1.25727 1.01658 0.94424 0.95045 1.69965 1.24003 1.32928 1.28676 0.86454 0.79804 0.81020 0.79205 1.18085 1.20586 1.16066 1.23159 0.96889 0.78405 1.01547 0.90509 0.88010 0.93296 0.80175 0.81128 0.85823 0.87749 0.90523 0.79156 0.91586 0.91274 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 8.67 71.24 0.62 -1.83 16 2 C -0.04 -0.88 5.91 -19.60 -0.12 -1.00 16 3 C -0.10 -1.69 9.66 22.23 0.21 -1.48 16 4 C -0.07 -1.29 9.82 22.35 0.22 -1.07 16 5 C -0.06 -1.33 6.31 22.29 0.14 -1.19 16 6 Cl -0.07 -1.49 28.95 -2.72 -0.08 -1.57 16 7 C -0.09 -2.61 8.53 22.55 0.19 -2.42 16 8 C -0.13 -4.22 5.72 -20.09 -0.11 -4.34 16 9 C 0.58 22.29 7.11 86.79 0.62 22.91 16 10 O -0.57 -24.36 15.75 -3.89 -0.06 -24.42 16 11 N -0.63 -25.00 3.63 -861.69 -3.13 -28.13 16 12 C 0.07 2.78 6.73 83.26 0.56 3.34 16 13 C 0.19 8.30 1.10 -11.12 -0.01 8.28 16 14 O -0.56 -25.40 13.33 -148.98 -1.99 -27.39 16 15 C -0.54 -27.78 9.28 25.60 0.24 -27.54 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 17 C 0.03 1.73 5.47 84.66 0.46 2.20 16 18 N -0.92 -51.73 13.96 21.45 0.30 -51.43 16 19 Si 0.91 38.07 24.42 68.60 1.68 39.75 16 20 H -0.26 -10.23 7.06 99.48 0.70 -9.53 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.24 -9.01 5.50 99.48 0.55 -8.47 16 23 C 0.12 5.04 8.02 83.17 0.67 5.71 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.10 1.46 8.05 -2.39 -0.02 1.44 16 26 H 0.05 1.35 6.80 -2.39 -0.02 1.34 16 27 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 28 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 29 H 0.12 4.08 6.04 -2.91 -0.02 4.06 16 30 H 0.10 3.88 8.10 -2.39 -0.02 3.86 16 31 H 0.08 2.83 4.79 -2.38 -0.01 2.82 16 32 H 0.36 15.28 3.16 -74.06 -0.23 15.04 16 33 H 0.27 14.41 8.31 -92.71 -0.77 13.63 16 34 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 35 H 0.11 4.10 8.10 -2.39 -0.02 4.08 16 Total: -1.00 -63.90 305.84 1.14 -62.76 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.74 Total: 28.84 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 3.69 Total: 1.59 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -2.83 Total: -79.56 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -2.05 Total: -51.81 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.68 Total: 39.75 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -63.90 1.14 -62.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335974102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.456 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds