Wall clock time and date at job start Tue Mar 31 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99696 * 2 1 4 4 H 1.48497 * 109.47225 * 268.74183 * 3 2 1 5 5 H 1.48501 * 109.47331 * 28.74874 * 3 2 1 6 6 H 1.48507 * 109.46730 * 148.74677 * 3 2 1 7 7 C 1.37875 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00068 * 354.44859 * 7 2 1 9 9 C 1.50704 * 119.99900 * 174.17660 * 7 2 1 10 10 C 1.52994 * 115.54954 * 295.13344 * 9 7 2 11 11 S 1.81409 * 109.46893 * 295.85564 * 10 9 7 12 12 O 1.42092 * 110.54395 * 297.67348 * 11 10 9 13 13 O 1.42101 * 110.54094 * 74.43067 * 11 10 9 14 14 N 1.65605 * 104.44821 * 186.05000 * 11 10 9 15 15 C 1.47416 * 125.65137 * 269.69367 * 14 11 10 16 16 C 1.55129 * 104.72503 * 155.81470 * 15 14 11 17 17 C 1.55162 * 101.48432 * 37.29686 * 16 15 14 18 18 F 1.39889 * 110.72170 * 205.96628 * 17 16 15 19 19 F 1.39904 * 110.71857 * 82.69425 * 17 16 15 20 20 C 1.47022 * 125.64487 * 90.00262 * 14 11 10 21 21 C 1.52997 * 117.49691 * 149.46084 * 9 7 2 22 22 C 1.53006 * 117.49778 * 80.80167 * 9 7 2 23 23 H 0.97001 * 120.00176 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47921 * 55.85557 * 10 9 7 25 25 H 1.09000 * 109.47192 * 175.85978 * 10 9 7 26 26 H 1.08997 * 110.36717 * 274.74892 * 15 14 11 27 27 H 1.09006 * 110.36692 * 37.07186 * 15 14 11 28 28 H 1.09000 * 111.19439 * 279.19280 * 16 15 14 29 29 H 1.08998 * 110.93919 * 155.28503 * 16 15 14 30 30 H 1.09006 * 109.88363 * 300.43591 * 20 14 11 31 31 H 1.08998 * 109.88250 * 61.60094 * 20 14 11 32 32 H 1.09003 * 117.49916 * 359.97438 * 21 9 7 33 33 H 1.09005 * 117.50028 * 145.02262 * 21 9 7 34 34 H 1.08997 * 117.49480 * 214.97860 * 22 9 7 35 35 H 1.09007 * 117.49704 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5232 2.0311 -1.3997 5 1 1.4335 2.6602 0.6734 6 1 3.5331 1.4480 0.7264 7 6 2.0045 -1.1940 -0.0005 8 1 1.4684 -2.1272 0.0895 9 6 3.5057 -1.1973 -0.1330 10 6 4.0519 -0.6761 -1.4636 11 16 3.5172 -1.7713 -2.8073 12 8 4.0435 -3.0784 -2.6245 13 8 2.1407 -1.5696 -3.0971 14 7 4.3048 -1.1975 -4.1463 15 6 3.7894 -0.1738 -5.0734 16 6 5.0556 0.4420 -5.7244 17 6 5.9648 -0.8065 -5.8731 18 9 7.3143 -0.4380 -5.8814 19 9 5.6384 -1.5215 -7.0305 20 6 5.6312 -1.6293 -4.6108 21 6 4.2726 -2.3316 0.5498 22 6 4.3267 -0.9148 1.1269 23 1 -0.4850 0.8400 -0.0004 24 1 3.6733 0.3302 -1.6428 25 1 5.1410 -0.6530 -1.4254 26 1 3.1555 -0.6334 -5.8317 27 1 3.2355 0.5891 -4.5263 28 1 5.5141 1.1835 -5.0702 29 1 4.8226 0.8736 -6.6978 30 1 6.3750 -1.4391 -3.8371 31 1 5.6107 -2.6914 -4.8552 32 1 3.6914 -3.0752 1.0951 33 1 5.1666 -2.7062 0.0512 34 1 5.2561 -0.3580 1.0076 35 1 3.7809 -0.7261 2.0515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336255837.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:20 Heat of formation + Delta-G solvation = -159.976711 kcal Electronic energy + Delta-G solvation = -23084.935453 eV Core-core repulsion = 19267.076577 eV Total energy + Delta-G solvation = -3817.858876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.97166 -48.14137 -38.97833 -38.79986 -38.11222 -36.91031 -34.32436 -31.58617 -30.22159 -29.87396 -27.59397 -24.07708 -23.25637 -22.68731 -21.24781 -20.18034 -18.97126 -18.90608 -18.53789 -17.62944 -17.15508 -17.03931 -16.83383 -16.47881 -15.66937 -15.52717 -15.22894 -14.94796 -14.82266 -14.57919 -14.45060 -14.30463 -14.07470 -13.93402 -13.19777 -13.15047 -13.02399 -12.90970 -12.87109 -12.60660 -12.54101 -12.42816 -12.16847 -11.90127 -11.78646 -11.59978 -10.96892 -10.71522 -10.47048 -10.04995 -8.31662 -6.44020 -0.79882 1.26417 1.38358 1.51441 1.68986 2.34533 2.50409 2.68913 2.84247 2.93546 3.01729 3.19891 3.33736 3.43138 3.73438 3.96993 4.02678 4.07987 4.28964 4.30473 4.41452 4.50043 4.58953 4.59356 4.65504 4.80816 4.90511 4.95320 4.95853 5.17076 5.21503 5.48861 5.60252 6.21810 6.65499 7.27520 8.84701 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021772 B = 0.005961 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.721808 B = 4695.930721 C = 4927.792751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.029 3.971 3 Si 0.915 3.085 4 H -0.251 1.251 5 H -0.293 1.293 6 H -0.209 1.209 7 C -0.518 4.518 8 H 0.028 0.972 9 C -0.037 4.037 10 C -0.572 4.572 11 S 2.632 3.368 12 O -0.980 6.980 13 O -0.978 6.978 14 N -1.019 6.019 15 C 0.103 3.897 16 C -0.151 4.151 17 C 0.278 3.722 18 F -0.186 7.186 19 F -0.196 7.196 20 C 0.076 3.924 21 C -0.175 4.175 22 C -0.156 4.156 23 H 0.268 0.732 24 H 0.124 0.876 25 H 0.165 0.835 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.720 4.914 -10.535 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.171 4.171 3 Si 0.736 3.264 4 H -0.175 1.175 5 H -0.219 1.219 6 H -0.131 1.131 7 C -0.555 4.555 8 H 0.046 0.954 9 C -0.040 4.040 10 C -0.705 4.705 11 S 2.731 3.269 12 O -0.971 6.971 13 O -0.968 6.968 14 N -0.858 5.858 15 C -0.021 4.021 16 C -0.190 4.190 17 C 0.241 3.759 18 F -0.167 7.167 19 F -0.177 7.177 20 C -0.051 4.051 21 C -0.212 4.212 22 C -0.195 4.195 23 H 0.077 0.923 24 H 0.142 0.858 25 H 0.183 0.817 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.929 4.199 -10.527 19.550 hybrid contribution -0.320 0.733 0.225 0.831 sum 15.609 4.932 -10.302 19.342 Atomic orbital electron populations 1.70061 1.08822 1.28470 1.50069 1.25916 0.95214 1.03429 0.92518 0.86259 0.81624 0.77959 0.80510 1.17539 1.21927 1.13060 1.20473 0.89189 0.93280 1.52545 0.95399 1.18775 0.92246 1.03501 0.89475 1.30187 1.12266 1.14834 1.13178 1.04324 0.73121 0.75260 0.74181 1.93467 1.80821 1.36536 1.86271 1.93552 1.33211 1.86718 1.83345 1.58747 1.29651 1.55720 1.41642 1.22333 0.96810 0.90157 0.92840 1.23917 0.93630 0.95367 1.06084 1.21814 0.78380 0.92907 0.82848 1.93031 1.34949 1.91975 1.96752 1.93031 1.92309 1.80109 1.52247 1.22727 0.85593 1.00245 0.96499 1.23092 1.01940 0.91777 1.04431 1.23154 1.01252 0.98018 0.97098 0.92275 0.85824 0.81685 0.90247 0.88543 0.84955 0.85060 0.85833 0.88967 0.90314 0.86920 0.86774 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 2 C 0.03 1.65 5.47 84.65 0.46 2.12 16 3 Si 0.91 39.76 25.04 68.60 1.72 41.48 16 4 H -0.25 -9.77 6.82 99.48 0.68 -9.09 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.21 -7.74 5.86 99.48 0.58 -7.15 16 7 C -0.52 -29.14 8.68 25.60 0.22 -28.91 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C -0.04 -1.60 0.81 -52.93 -0.04 -1.64 16 10 C -0.57 -19.82 5.67 71.98 0.41 -19.41 16 11 S 2.63 101.16 5.37 -56.49 -0.30 100.85 16 12 O -0.98 -40.73 17.60 -127.65 -2.25 -42.98 16 13 O -0.98 -48.09 17.22 -127.65 -2.20 -50.29 16 14 N -1.02 -27.66 3.62 -506.02 -1.83 -29.50 16 15 C 0.10 2.27 6.89 86.93 0.60 2.87 16 16 C -0.15 -2.15 6.70 32.07 0.21 -1.93 16 17 C 0.28 5.14 2.56 31.79 0.08 5.22 16 18 F -0.19 -3.39 17.18 44.97 0.77 -2.62 16 19 F -0.20 -4.30 17.19 44.97 0.77 -3.52 16 20 C 0.08 1.60 6.53 86.73 0.57 2.17 16 21 C -0.18 -6.55 9.96 30.62 0.30 -6.25 16 22 C -0.16 -5.57 8.13 30.62 0.25 -5.32 16 23 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.12 4.22 4.87 -2.39 -0.01 4.21 16 25 H 0.17 3.83 8.10 -2.39 -0.02 3.82 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.12 1.91 8.10 -2.38 -0.02 1.90 16 31 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 32 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 34 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -77.76 309.03 1.00 -76.77 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.95 Total: 19.30 kcal Atomic # 6 Polarization: -54.16 SS G_CDS: 3.07 Total: -51.09 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -1.53 Total: -87.89 kcal Atomic # 8 Polarization: -88.82 SS G_CDS: -4.45 Total: -93.27 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 1.55 Total: -6.14 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.72 Total: 41.48 kcal Atomic # 16 Polarization: 101.16 SS G_CDS: -0.30 Total: 100.85 kcal Total: -77.76 1.00 -76.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336255837.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.211 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds