Wall clock time and date at job start Tue Mar 31 2020 07:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37938 * 120.06705 * 2 1 4 4 C 1.38386 * 120.18124 * 180.27654 * 3 2 1 5 5 C 1.38309 * 120.31551 * 359.73730 * 4 3 2 6 6 C 1.38112 * 120.13087 * 359.97438 * 5 4 3 7 7 Cl 1.73605 * 120.09218 * 180.02562 * 6 5 4 8 8 C 1.39583 * 120.06653 * 179.73579 * 2 1 3 9 9 C 1.47770 * 120.15713 * 0.02562 * 8 2 1 10 10 O 1.21563 * 120.00150 * 269.72306 * 9 8 2 11 11 N 1.34777 * 119.99858 * 89.44779 * 9 8 2 12 12 C 1.47067 * 136.05686 * 359.90186 * 11 9 8 13 13 C 1.53242 * 88.08303 * 207.20838 * 12 11 9 14 14 O 1.42903 * 114.19722 * 87.72762 * 13 12 11 15 15 C 1.50699 * 114.32465 * 220.47062 * 13 12 11 16 16 H 1.08004 * 120.00200 * 93.75800 * 15 13 12 17 17 C 1.37872 * 120.00248 * 273.75719 * 15 13 12 18 18 N 1.31520 * 119.99717 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00369 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46803 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47113 * 119.99948 * 19 17 15 22 22 H 1.48498 * 109.47301 * 240.00066 * 19 17 15 23 23 C 1.47062 * 136.05651 * 180.27967 * 11 9 8 24 24 H 1.09001 * 109.47270 * 270.25898 * 1 2 3 25 25 H 1.08999 * 109.47224 * 30.26003 * 1 2 3 26 26 H 1.09001 * 109.46947 * 150.25964 * 1 2 3 27 27 H 1.08001 * 119.91275 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.83804 * 179.71594 * 4 3 2 29 29 H 1.08003 * 119.93317 * 180.02562 * 5 4 3 30 30 H 1.09000 * 113.47213 * 321.94054 * 12 11 9 31 31 H 1.08998 * 113.46769 * 92.38056 * 12 11 9 32 32 H 0.96700 * 113.99424 * 86.30612 * 14 13 12 33 33 H 0.97008 * 119.99851 * 179.97438 * 18 17 15 34 34 H 1.09005 * 113.46915 * 267.61569 * 23 11 9 35 35 H 1.08999 * 113.47045 * 38.06204 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5819 1.1965 -0.0058 5 6 4.2824 0.0040 -0.0061 6 6 3.6036 -1.1988 -0.0001 7 17 4.4839 -2.6951 0.0001 8 6 2.2063 -1.2080 0.0056 9 6 1.4724 -2.4906 0.0109 10 8 1.1746 -3.0161 1.0659 11 7 1.1285 -3.0750 -1.1538 12 6 1.2916 -2.7660 -2.5824 13 6 0.0199 -3.5780 -2.8505 14 8 -1.1891 -2.8225 -2.7517 15 6 0.0835 -4.4419 -4.0836 16 1 0.3907 -5.4743 -4.0044 17 6 -0.2504 -3.9145 -5.3129 18 7 -0.6240 -2.6571 -5.4094 19 14 -0.1723 -4.9855 -6.8413 20 1 0.2732 -6.3516 -6.4661 21 1 -1.5183 -5.0580 -7.4643 22 1 0.7898 -4.3987 -7.8084 23 6 0.4191 -4.2990 -1.5555 24 1 -0.3634 0.0046 1.0277 25 1 -0.3633 0.8876 -0.5179 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6577 2.1289 -0.0004 28 1 4.1174 2.1345 -0.0104 29 1 5.3624 0.0133 -0.0102 30 1 1.1844 -1.7059 -2.8122 31 1 2.1874 -3.2046 -3.0219 32 1 -1.4376 -2.3696 -3.5691 33 1 -0.8586 -2.2859 -6.2744 34 1 1.0802 -5.1502 -1.7187 35 1 -0.4285 -4.5399 -0.9139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336273790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:54 Heat of formation + Delta-G solvation = -48.209313 kcal Electronic energy + Delta-G solvation = -21753.621945 eV Core-core repulsion = 18356.962396 eV Total energy + Delta-G solvation = -3396.659549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66659 -40.28093 -38.80860 -37.63434 -35.90760 -34.12648 -33.88149 -32.34276 -30.27918 -28.24777 -27.23708 -26.89786 -24.48640 -22.84831 -21.85686 -20.18528 -19.40077 -18.33510 -17.60316 -17.27107 -17.17163 -16.83914 -16.00803 -15.85831 -15.53193 -15.03074 -14.81288 -14.55266 -14.38825 -14.10712 -13.87512 -13.76250 -13.53757 -13.42342 -12.82516 -12.80233 -12.71500 -12.49271 -12.35469 -12.23980 -12.16582 -12.04951 -11.45272 -11.02554 -10.67329 -10.28897 -9.96032 -9.74686 -9.67062 -8.28547 -6.45231 -0.08842 0.11259 0.96327 1.42735 1.45486 1.50316 1.60540 1.88084 2.40154 2.50066 2.92877 3.31128 3.61532 3.71082 3.89079 4.08590 4.19986 4.21356 4.33823 4.41257 4.54228 4.57907 4.60822 4.72315 4.74227 4.84899 4.87538 5.07831 5.10287 5.20574 5.25370 5.37256 5.72211 5.74251 5.89068 6.60385 6.73381 6.98643 7.28484 7.48214 8.78091 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018677 B = 0.005106 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.770804 B = 5481.981506 C = 5736.009598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.111 4.111 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.023 4.023 7 Cl -0.073 7.073 8 C -0.138 4.138 9 C 0.587 3.413 10 O -0.588 6.588 11 N -0.624 5.624 12 C 0.093 3.907 13 C 0.227 3.773 14 O -0.582 6.582 15 C -0.552 4.552 16 H 0.074 0.926 17 C 0.034 3.966 18 N -0.915 5.915 19 Si 0.970 3.030 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.277 1.277 23 C 0.106 3.894 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.039 0.961 27 H 0.170 0.830 28 H 0.182 0.818 29 H 0.165 0.835 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.390 0.610 33 H 0.277 0.723 34 H 0.102 0.898 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 9.961 5.201 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.129 4.129 4 C -0.094 4.094 5 C -0.135 4.135 6 C -0.050 4.050 7 Cl -0.044 7.044 8 C -0.141 4.141 9 C 0.377 3.623 10 O -0.471 6.471 11 N -0.355 5.355 12 C -0.030 4.030 13 C 0.186 3.814 14 O -0.395 6.395 15 C -0.589 4.589 16 H 0.092 0.908 17 C -0.167 4.167 18 N -0.556 5.556 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.202 1.202 23 C -0.017 4.017 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.187 0.813 28 H 0.200 0.800 29 H 0.182 0.818 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.246 0.754 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.651 9.553 6.411 14.395 hybrid contribution -0.095 -0.861 -1.234 1.507 sum 8.556 8.693 5.178 13.250 Atomic orbital electron populations 1.20891 0.90209 1.03571 1.03021 1.20159 0.96846 0.91577 0.96923 1.21507 0.95086 0.97362 0.98911 1.21753 0.93727 0.98746 0.95172 1.21373 1.01985 0.89506 1.00672 1.21139 0.90216 0.88862 1.04785 1.98372 1.75373 1.33801 1.96826 1.19693 0.92813 0.93565 1.08046 1.18000 0.77996 0.84574 0.81715 1.90702 1.57952 1.66915 1.31496 1.49708 1.54890 1.24877 1.06006 1.23914 1.01821 1.00806 0.76460 1.19667 0.81946 0.88471 0.91345 1.86025 1.42266 1.68614 1.42547 1.21653 1.47217 0.98451 0.91625 0.90825 1.25747 0.92828 0.96158 1.01925 1.69330 1.45454 1.13908 1.26908 0.85314 0.77784 0.78958 0.78419 1.19209 1.20593 1.20217 1.23388 0.94794 0.88793 0.94677 0.90138 0.87964 0.94145 0.81271 0.80034 0.81778 0.92523 0.89561 0.75432 0.91289 0.88043 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 9.62 71.23 0.69 -2.96 16 2 C -0.05 -1.63 5.91 -19.61 -0.12 -1.75 16 3 C -0.11 -2.28 9.69 22.23 0.22 -2.07 16 4 C -0.08 -1.30 10.04 22.32 0.22 -1.08 16 5 C -0.12 -2.56 9.82 22.26 0.22 -2.34 16 6 C -0.02 -0.71 6.35 22.60 0.14 -0.57 16 7 Cl -0.07 -2.33 28.04 -2.72 -0.08 -2.41 16 8 C -0.14 -4.98 5.45 -20.07 -0.11 -5.09 16 9 C 0.59 25.83 5.03 86.76 0.44 26.26 16 10 O -0.59 -29.53 17.88 -3.91 -0.07 -29.60 16 11 N -0.62 -27.71 3.69 -862.80 -3.18 -30.89 16 12 C 0.09 4.13 7.81 83.09 0.65 4.78 16 13 C 0.23 10.99 1.57 -11.29 -0.02 10.97 16 14 O -0.58 -30.05 13.54 -148.98 -2.02 -32.06 16 15 C -0.55 -27.42 8.69 25.60 0.22 -27.20 16 16 H 0.07 3.57 7.81 -2.91 -0.02 3.54 16 17 C 0.03 1.66 5.39 84.65 0.46 2.11 16 18 N -0.92 -45.50 11.01 21.45 0.24 -45.27 16 19 Si 0.97 38.99 29.54 68.60 2.03 41.02 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 23 C 0.11 4.79 8.04 83.18 0.67 5.45 16 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.10 2.42 8.09 -2.39 -0.02 2.40 16 26 H 0.04 1.56 7.07 -2.39 -0.02 1.54 16 27 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 30 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.09 3.70 8.10 -2.39 -0.02 3.68 16 32 H 0.39 20.36 6.32 -74.06 -0.47 19.89 16 33 H 0.28 12.96 8.31 -92.70 -0.77 12.19 16 34 H 0.10 4.21 8.10 -2.38 -0.02 4.19 16 35 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -63.40 320.83 1.25 -62.15 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.66 Total: 30.53 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 3.68 Total: 6.53 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.94 Total: -76.16 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: -2.09 Total: -61.66 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -63.40 1.25 -62.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336273790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.939 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds