Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00213 * 2 1 4 4 H 1.48506 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47455 * 300.00152 * 3 2 1 6 6 H 1.48498 * 109.46830 * 60.00485 * 3 2 1 7 7 C 1.37878 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99718 * 172.99875 * 7 2 1 9 9 C 1.50696 * 120.00313 * 353.00404 * 7 2 1 10 10 C 1.53003 * 115.55213 * 84.78205 * 9 7 2 11 11 S 1.81400 * 109.47121 * 39.91650 * 10 9 7 12 12 O 1.42094 * 110.54096 * 285.55686 * 11 10 9 13 13 O 1.42099 * 110.54414 * 62.30767 * 11 10 9 14 14 N 1.65602 * 104.44692 * 173.93429 * 11 10 9 15 15 C 1.47025 * 125.64641 * 90.00390 * 14 11 10 16 16 C 1.54319 * 107.26724 * 181.01855 * 15 14 11 17 17 H 1.09007 * 110.72192 * 140.55528 * 16 15 14 18 18 F 1.39901 * 110.72237 * 263.82419 * 16 15 14 19 19 C 1.55158 * 102.94662 * 22.18927 * 16 15 14 20 20 H 1.09003 * 111.00131 * 82.60693 * 19 16 15 21 21 F 1.39895 * 111.00787 * 206.42074 * 19 16 15 22 22 C 1.47419 * 125.64776 * 269.68848 * 14 11 10 23 23 C 1.53008 * 117.51807 * 230.48650 * 9 7 2 24 24 C 1.53001 * 60.00033 * 107.47782 * 23 9 7 25 25 H 0.97004 * 119.99538 * 5.01966 * 1 2 3 26 26 H 1.09002 * 109.47179 * 279.91165 * 10 9 7 27 27 H 1.09004 * 109.47065 * 159.91846 * 10 9 7 28 28 H 1.08999 * 109.87648 * 300.43261 * 15 14 11 29 29 H 1.08993 * 109.88247 * 61.44725 * 15 14 11 30 30 H 1.09004 * 110.36810 * 274.75235 * 22 14 11 31 31 H 1.08995 * 110.36845 * 37.07309 * 22 14 11 32 32 H 1.09001 * 117.49192 * 214.96943 * 23 9 7 33 33 H 1.08998 * 117.49737 * 359.97438 * 23 9 7 34 34 H 1.08999 * 117.49813 * 252.50717 * 24 23 9 35 35 H 1.09004 * 117.49832 * 107.48743 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0784 -1.1976 -0.1145 9 6 1.2594 -2.4944 0.1578 10 6 0.6797 -3.0839 -1.1296 11 16 1.8644 -2.8585 -2.4848 12 8 1.8823 -1.5031 -2.9111 13 8 3.0716 -3.5570 -2.2131 14 7 1.1957 -3.6785 -3.7587 15 6 0.2755 -3.1109 -4.7549 16 6 -0.1023 -4.2465 -5.7291 17 1 -1.1564 -4.1874 -6.0002 18 9 0.7064 -4.2095 -6.8701 19 6 0.1798 -5.5259 -4.8977 20 1 -0.6581 -5.7569 -4.2399 21 9 0.4738 -6.6106 -5.7307 22 6 1.4298 -5.0969 -4.0853 23 6 1.7652 -3.4744 1.2185 24 6 0.4655 -2.7008 1.4494 25 1 -0.4850 0.8369 -0.0735 26 1 -0.2531 -2.5758 -1.3741 27 1 0.4877 -4.1475 -0.9879 28 1 -0.6195 -2.7337 -4.2602 29 1 0.7678 -2.3032 -5.2965 30 1 2.3317 -5.2036 -4.6881 31 1 1.5101 -5.6880 -3.1731 32 1 1.6850 -4.5390 0.9989 33 1 2.6373 -3.1788 1.8016 34 1 0.4825 -1.8964 2.1847 35 1 -0.4698 -3.2566 1.3819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336299554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -139.675685 kcal Electronic energy + Delta-G solvation = -22943.180326 eV Core-core repulsion = 19126.201768 eV Total energy + Delta-G solvation = -3816.978558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.40116 -47.30870 -37.74820 -36.79336 -36.24884 -35.03602 -32.11104 -30.16202 -28.97530 -28.26917 -25.53996 -22.92060 -21.60944 -21.26334 -19.64087 -18.66954 -17.71356 -17.34933 -16.49994 -16.02454 -15.63844 -15.56893 -15.18729 -14.90799 -14.77193 -14.46279 -13.89512 -13.75390 -13.61722 -13.28351 -13.07008 -12.52584 -12.24704 -12.11698 -11.85228 -11.34114 -11.21597 -11.10905 -11.03146 -11.00258 -10.92611 -10.66391 -10.55425 -10.43591 -10.19248 -9.78574 -9.10910 -8.90431 -8.60306 -8.17608 -6.22256 -4.37009 0.94118 3.23471 3.28681 3.36693 3.41982 3.64010 3.92133 4.06380 4.35340 4.38910 4.56317 4.66687 4.82052 4.89310 5.07935 5.13395 5.14886 5.26217 5.49228 5.56669 5.70737 5.80431 5.84799 6.03931 6.23167 6.28235 6.44230 6.54728 6.64199 6.88882 7.11215 7.33509 7.73280 8.11916 8.72604 9.40753 10.85347 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.005553 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.251303 B = 5041.432576 C = 5583.833884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.097 3.903 3 Si 0.893 3.107 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.048 3.952 10 C -0.556 4.556 11 S 2.634 3.366 12 O -0.930 6.930 13 O -0.964 6.964 14 N -1.023 6.023 15 C 0.095 3.905 16 C 0.059 3.941 17 H 0.116 0.884 18 F -0.192 7.192 19 C 0.055 3.945 20 H 0.120 0.880 21 F -0.192 7.192 22 C 0.099 3.901 23 C -0.204 4.204 24 C -0.143 4.143 25 H 0.265 0.735 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 -9.528 -7.863 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.110 4.110 3 Si 0.720 3.280 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.088 0.912 9 C 0.046 3.954 10 C -0.689 4.689 11 S 2.732 3.268 12 O -0.921 6.921 13 O -0.954 6.954 14 N -0.859 5.859 15 C -0.031 4.031 16 C 0.022 3.978 17 H 0.133 0.867 18 F -0.173 7.173 19 C 0.017 3.983 20 H 0.138 0.862 21 F -0.173 7.173 22 C -0.027 4.027 23 C -0.241 4.241 24 C -0.182 4.182 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.995 -8.916 -7.862 12.541 hybrid contribution -0.328 0.539 0.140 0.646 sum -4.323 -8.378 -7.721 12.186 Atomic orbital electron populations 1.69959 1.06202 1.27453 1.46477 1.24906 0.94747 0.99358 0.92003 0.86502 0.80788 0.83050 0.77704 1.19178 1.20259 1.20777 1.20646 0.93749 0.88743 1.54999 0.91181 1.18196 0.98904 0.94108 0.84207 1.29991 1.16441 1.06355 1.16131 1.04636 0.75439 0.73207 0.73477 1.93539 1.86121 1.32691 1.79715 1.93490 1.41942 1.75090 1.84914 1.59378 1.63172 1.19863 1.43485 1.22270 0.94826 0.95771 0.90219 1.23161 0.95460 0.95842 0.83384 0.86665 1.92868 1.75607 1.97114 1.51711 1.23469 1.00223 0.83357 0.91260 0.86184 1.92841 1.94897 1.56069 1.73450 1.22441 0.97177 0.82336 1.00784 1.23135 0.98754 0.95553 1.06657 1.22538 0.92418 1.01114 1.02130 0.92544 0.85342 0.88542 0.89077 0.88941 0.89743 0.88948 0.91228 0.89611 0.89575 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.37 12.96 55.43 0.72 -22.65 16 2 C 0.10 2.62 5.39 -17.82 -0.10 2.53 16 3 Si 0.89 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.54 -14.62 6.89 -34.44 -0.24 -14.86 16 8 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 9 C 0.05 1.13 1.64 -155.65 -0.26 0.88 16 10 C -0.56 -11.05 6.29 37.16 0.23 -10.82 16 11 S 2.63 53.85 4.83 -107.50 -0.52 53.33 16 12 O -0.93 -22.40 16.73 -57.54 -0.96 -23.36 16 13 O -0.96 -21.83 17.60 -57.54 -1.01 -22.84 16 14 N -1.02 -15.55 3.62 -111.30 -0.40 -15.95 16 15 C 0.10 1.19 6.71 -3.06 -0.02 1.17 16 16 C 0.06 0.61 4.65 -24.90 -0.12 0.49 16 17 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 18 F -0.19 -2.51 16.92 2.25 0.04 -2.48 16 19 C 0.06 0.55 4.77 -24.46 -0.12 0.44 16 20 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 21 F -0.19 -2.25 16.96 2.25 0.04 -2.22 16 22 C 0.10 1.26 6.70 -2.41 -0.02 1.24 16 23 C -0.20 -4.28 9.88 -26.73 -0.26 -4.55 16 24 C -0.14 -3.15 9.50 -26.73 -0.25 -3.40 16 25 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 26 H 0.13 2.54 8.14 -51.92 -0.42 2.12 16 27 H 0.10 1.55 7.95 -51.92 -0.41 1.14 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 33 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -32.79 316.45 -8.10 -40.90 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.60 Total: 0.87 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -1.14 Total: -26.87 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.32 Total: -38.60 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.98 Total: -46.21 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.08 Total: -4.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 53.85 SS G_CDS: -0.52 Total: 53.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.79 -8.10 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336299554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.781 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds