Wall clock time and date at job start Tue Mar 31 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09006 * 110.43540 * 36.08040 * 14 13 11 16 16 C 1.54895 * 110.48496 * 273.54427 * 14 13 11 17 17 C 1.54892 * 102.74567 * 203.37785 * 16 14 13 18 18 C 1.54264 * 104.19701 * 37.94001 * 17 16 14 19 19 C 1.53877 * 106.60111 * 336.39190 * 18 17 16 20 20 H 1.08995 * 110.03435 * 119.27927 * 19 18 17 21 21 O 1.42896 * 110.02977 * 240.71505 * 19 18 17 22 22 C 1.42898 * 113.99932 * 267.16403 * 21 19 18 23 23 F 1.39903 * 109.47192 * 300.00029 * 22 21 19 24 24 F 1.39899 * 109.47169 * 60.00225 * 22 21 19 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 29 29 H 1.08997 * 110.75201 * 321.69381 * 16 14 13 30 30 H 1.09001 * 110.75308 * 85.06146 * 16 14 13 31 31 H 1.08997 * 110.48481 * 156.62480 * 17 16 14 32 32 H 1.09000 * 110.48664 * 279.26324 * 17 16 14 33 33 H 1.09004 * 110.02704 * 95.67574 * 18 17 16 34 34 H 1.09003 * 110.03230 * 217.05394 * 18 17 16 35 35 H 1.09002 * 109.47186 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4239 -7.7789 -0.6360 16 6 2.0554 -8.1986 1.4120 17 6 2.1279 -9.7398 1.2764 18 6 3.2739 -9.9778 0.2715 19 6 3.4026 -8.6904 -0.5615 20 1 4.3953 -8.2595 -0.4319 21 8 3.1682 -8.9752 -1.9420 22 6 4.3540 -9.2641 -2.6853 23 9 5.2177 -8.1648 -2.6314 24 9 4.9883 -10.3830 -2.1349 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 3.8007 -6.1835 -0.0260 29 1 2.8239 -7.8342 2.0937 30 1 1.0648 -7.8859 1.7421 31 1 2.3624 -10.1967 2.2378 32 1 1.1896 -10.1329 0.8850 33 1 4.2042 -10.1717 0.8053 34 1 3.0331 -10.8204 -0.3768 35 1 4.0913 -9.4697 -3.7230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337371326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:06 Heat of formation + Delta-G solvation = -206.822190 kcal Electronic energy + Delta-G solvation = -21542.183279 eV Core-core repulsion = 17722.293031 eV Total energy + Delta-G solvation = -3819.890249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.38937 -47.49162 -39.99648 -38.45432 -36.27438 -33.55685 -32.42052 -29.72884 -28.58909 -27.16056 -25.51604 -25.30954 -21.28192 -21.00310 -20.43121 -18.60075 -18.33964 -17.93177 -17.63736 -16.51324 -16.31327 -15.62752 -15.00037 -14.79926 -14.60997 -14.37370 -14.26264 -13.89878 -13.84772 -13.41271 -13.26681 -13.06801 -12.85660 -12.66133 -12.34664 -12.13998 -11.73249 -11.38649 -11.04811 -11.03378 -10.99944 -10.85624 -10.82014 -10.72614 -9.81794 -9.40819 -9.05725 -8.91589 -8.23593 -6.49283 -6.20884 -3.91473 2.58496 3.03466 3.07509 3.24196 3.27565 3.30153 3.35744 3.69240 4.03650 4.21268 4.24635 4.31018 4.52433 4.57496 4.87826 5.08603 5.13724 5.14240 5.18401 5.25880 5.33814 5.53998 5.63578 5.69510 5.75230 5.89355 6.00215 6.09526 6.14689 6.30406 6.61382 7.59962 7.66689 8.35757 8.59661 9.24325 10.86508 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025163 B = 0.003262 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.477389 B = 8581.676555 C = 9316.437802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.514 6.514 13 N -0.734 5.734 14 C 0.150 3.850 15 H 0.107 0.893 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.139 4.139 19 C 0.067 3.933 20 H 0.081 0.919 21 O -0.372 6.372 22 C 0.402 3.598 23 F -0.207 7.207 24 F -0.210 7.210 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.397 0.603 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -21.694 -1.775 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.388 6.388 13 N -0.388 5.388 14 C 0.044 3.956 15 H 0.125 0.875 16 C -0.172 4.172 17 C -0.158 4.158 18 C -0.178 4.178 19 C 0.010 3.990 20 H 0.099 0.901 21 O -0.294 6.294 22 C 0.311 3.689 23 F -0.189 7.189 24 F -0.192 7.192 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.231 0.769 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.108 -21.899 -1.851 23.425 hybrid contribution 2.909 1.349 0.056 3.207 sum 11.017 -20.550 -1.794 23.386 Atomic orbital electron populations 1.70011 1.05951 1.27560 1.46785 1.24988 0.95021 0.99001 0.94511 0.86226 0.79241 0.81241 0.78807 1.19932 1.20805 1.19940 1.22837 0.94894 0.91696 1.59075 0.90977 1.85383 1.04848 0.96256 1.96721 1.23536 1.06629 0.95292 1.04967 1.20308 0.86521 0.86193 0.74817 1.90699 1.15283 1.85522 1.47288 1.46057 1.09860 1.04941 1.77913 1.21736 0.96923 0.80235 0.96708 0.87491 1.22875 1.03493 0.95002 0.95850 1.22292 0.98523 0.95981 0.99049 1.22614 1.00040 0.96862 0.98233 1.23263 0.99969 0.96189 0.79607 0.90061 1.88520 1.29400 1.88548 1.22885 1.23202 0.76739 0.72623 0.96375 1.93075 1.72520 1.56009 1.97292 1.93070 1.83762 1.53882 1.88455 0.92128 0.89187 0.89194 0.76865 0.90724 0.89816 0.90945 0.90858 0.90649 0.90077 0.81666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 11 C 0.54 10.03 7.84 -10.99 -0.09 9.94 16 12 O -0.51 -11.62 15.57 5.56 0.09 -11.53 16 13 N -0.73 -10.05 5.18 -52.20 -0.27 -10.32 16 14 C 0.15 1.83 2.89 -66.27 -0.19 1.64 16 15 H 0.11 1.57 7.60 -51.93 -0.39 1.17 16 16 C -0.13 -1.43 6.57 -24.73 -0.16 -1.59 16 17 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 18 C -0.14 -1.14 5.98 -25.61 -0.15 -1.29 16 19 C 0.07 0.66 2.84 -25.61 -0.07 0.59 16 20 H 0.08 0.75 6.80 -51.93 -0.35 0.40 16 21 O -0.37 -3.81 10.20 -35.23 -0.36 -4.16 16 22 C 0.40 3.18 6.26 101.05 0.63 3.81 16 23 F -0.21 -2.04 16.66 2.25 0.04 -2.00 16 24 F -0.21 -1.79 16.60 2.25 0.04 -1.76 16 25 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 27 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 28 H 0.40 4.38 8.32 -40.82 -0.34 4.04 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.66 7.95 -51.93 -0.41 0.24 16 35 H 0.17 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -34.50 321.17 -6.34 -40.84 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.43 Total: 0.99 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 0.21 Total: -4.00 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.46 Total: -35.83 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.27 Total: -15.70 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.07 Total: -3.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.50 -6.34 -40.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337371326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.982 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds