Wall clock time and date at job start Tue Mar 31 2020 07:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09006 * 110.43540 * 36.08040 * 14 13 11 16 16 C 1.54895 * 110.48496 * 273.54427 * 14 13 11 17 17 C 1.54892 * 102.74567 * 203.37785 * 16 14 13 18 18 C 1.54264 * 104.19701 * 37.94001 * 17 16 14 19 19 C 1.53877 * 106.60111 * 336.39190 * 18 17 16 20 20 H 1.08995 * 110.03435 * 119.27927 * 19 18 17 21 21 O 1.42896 * 110.02977 * 240.71505 * 19 18 17 22 22 C 1.42898 * 113.99932 * 267.16403 * 21 19 18 23 23 F 1.39903 * 109.47192 * 300.00029 * 22 21 19 24 24 F 1.39899 * 109.47169 * 60.00225 * 22 21 19 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 29 29 H 1.08997 * 110.75201 * 321.69381 * 16 14 13 30 30 H 1.09001 * 110.75308 * 85.06146 * 16 14 13 31 31 H 1.08997 * 110.48481 * 156.62480 * 17 16 14 32 32 H 1.09000 * 110.48664 * 279.26324 * 17 16 14 33 33 H 1.09004 * 110.02704 * 95.67574 * 18 17 16 34 34 H 1.09003 * 110.03230 * 217.05394 * 18 17 16 35 35 H 1.09002 * 109.47186 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4239 -7.7789 -0.6360 16 6 2.0554 -8.1986 1.4120 17 6 2.1279 -9.7398 1.2764 18 6 3.2739 -9.9778 0.2715 19 6 3.4026 -8.6904 -0.5615 20 1 4.3953 -8.2595 -0.4319 21 8 3.1682 -8.9752 -1.9420 22 6 4.3540 -9.2641 -2.6853 23 9 5.2177 -8.1648 -2.6314 24 9 4.9883 -10.3830 -2.1349 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 3.8007 -6.1835 -0.0260 29 1 2.8239 -7.8342 2.0937 30 1 1.0648 -7.8859 1.7421 31 1 2.3624 -10.1967 2.2378 32 1 1.1896 -10.1329 0.8850 33 1 4.2042 -10.1717 0.8053 34 1 3.0331 -10.8204 -0.3768 35 1 4.0913 -9.4697 -3.7230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337371326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:05 Heat of formation + Delta-G solvation = -231.559707 kcal Electronic energy + Delta-G solvation = -21543.255979 eV Core-core repulsion = 17722.293031 eV Total energy + Delta-G solvation = -3820.962948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.04102 -48.14955 -41.12761 -39.60866 -37.15233 -34.79949 -34.57951 -31.20177 -29.34519 -28.26718 -27.58435 -26.05203 -22.35420 -21.85212 -21.56700 -19.92360 -19.34113 -18.85725 -18.58409 -17.81269 -17.43767 -16.87832 -16.53226 -16.41435 -16.07584 -15.34723 -15.06956 -14.99911 -14.73083 -14.53419 -14.50476 -14.17220 -13.94067 -13.72415 -13.49372 -13.17519 -13.06472 -12.86852 -12.76924 -12.61238 -12.13908 -11.89763 -11.75710 -11.59591 -11.52301 -11.12945 -10.97121 -10.29063 -10.15504 -8.67210 -8.34651 -6.13056 1.25102 1.44122 1.45556 1.55391 1.57168 1.92086 2.26494 2.29996 2.72264 2.99450 3.24417 3.31923 3.51074 3.73486 3.77948 3.88953 3.94658 4.12822 4.27411 4.34010 4.36361 4.40355 4.49089 4.57275 4.79328 4.94462 5.09666 5.14903 5.24942 5.41230 5.41564 5.61631 6.19466 6.41862 7.06468 7.18950 8.74386 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025163 B = 0.003262 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.477389 B = 8581.676555 C = 9316.437802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.538 3.462 12 O -0.560 6.560 13 N -0.710 5.710 14 C 0.143 3.857 15 H 0.079 0.921 16 C -0.132 4.132 17 C -0.113 4.113 18 C -0.132 4.132 19 C 0.070 3.930 20 H 0.091 0.909 21 O -0.389 6.389 22 C 0.399 3.601 23 F -0.219 7.219 24 F -0.212 7.212 25 H 0.271 0.729 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.414 0.586 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.112 -22.500 -1.764 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.281 4.281 11 C 0.324 3.676 12 O -0.438 6.438 13 N -0.363 5.363 14 C 0.038 3.962 15 H 0.097 0.903 16 C -0.171 4.171 17 C -0.151 4.151 18 C -0.170 4.170 19 C 0.013 3.987 20 H 0.109 0.891 21 O -0.311 6.311 22 C 0.308 3.692 23 F -0.201 7.201 24 F -0.195 7.195 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.251 0.749 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.840 -22.750 -1.839 25.267 hybrid contribution 2.114 1.469 0.033 2.575 sum 12.954 -21.281 -1.806 24.979 Atomic orbital electron populations 1.70180 1.07982 1.28700 1.47892 1.26126 0.95956 1.03295 0.93657 0.85005 0.77815 0.75677 0.79510 1.18683 1.20353 1.18615 1.23187 0.95373 0.92049 1.59087 0.89921 1.85561 1.10367 0.99128 1.97055 1.23373 1.03670 0.94269 1.06793 1.20052 0.86230 0.86561 0.74772 1.90690 1.17264 1.86007 1.49850 1.45807 1.10136 1.04669 1.75711 1.21875 0.96928 0.79651 0.97761 0.90313 1.22834 1.02483 0.97021 0.94725 1.22270 0.98730 0.93849 1.00246 1.22600 1.00667 0.95849 0.97917 1.23222 0.99081 0.96362 0.80047 0.89097 1.88510 1.30894 1.88668 1.23038 1.23811 0.75796 0.71997 0.97597 1.93050 1.72923 1.56778 1.97363 1.93062 1.83787 1.53924 1.88682 0.91960 0.87391 0.87059 0.74910 0.89679 0.92139 0.88927 0.91113 0.88885 0.89696 0.77807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.55 -31.54 9.50 67.96 0.65 -30.89 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 11 C 0.54 20.19 7.84 87.66 0.69 20.88 16 12 O -0.56 -26.24 15.57 -3.02 -0.05 -26.29 16 13 N -0.71 -18.71 5.18 -437.44 -2.27 -20.98 16 14 C 0.14 3.42 2.89 46.07 0.13 3.55 16 15 H 0.08 2.38 7.60 -2.38 -0.02 2.36 16 16 C -0.13 -2.72 6.57 31.89 0.21 -2.51 16 17 C -0.11 -1.66 6.83 31.67 0.22 -1.44 16 18 C -0.13 -1.82 5.98 31.32 0.19 -1.63 16 19 C 0.07 1.25 2.84 31.32 0.09 1.34 16 20 H 0.09 1.44 6.80 -2.39 -0.02 1.42 16 21 O -0.39 -7.30 10.20 -148.98 -1.52 -8.81 16 22 C 0.40 5.35 6.26 113.37 0.71 6.06 16 23 F -0.22 -3.84 16.66 44.97 0.75 -3.09 16 24 F -0.21 -3.10 16.60 44.97 0.75 -2.35 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 27 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 28 H 0.41 8.21 8.32 -92.71 -0.77 7.44 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.15 7.95 -2.39 -0.02 1.13 16 35 H 0.21 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.18 321.17 2.94 -74.23 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.35 Total: 15.12 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 3.78 Total: -8.12 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.98 Total: -76.90 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.57 Total: -35.11 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 1.50 Total: -5.44 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -77.18 2.94 -74.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337371326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.325 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds