Wall clock time and date at job start Tue Mar 31 2020 07:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48496 * 109.47210 * 240.00180 * 3 2 1 5 5 H 1.48498 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46991 * 120.00191 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99610 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00241 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.01882 * 325.70329 * 14 13 11 16 16 C 1.54263 * 110.03326 * 87.09407 * 14 13 11 17 17 C 1.54891 * 104.19572 * 142.89326 * 16 14 13 18 18 C 1.54883 * 102.75090 * 322.06002 * 17 16 14 19 19 C 1.53880 * 110.03475 * 204.31420 * 14 13 11 20 20 H 1.08989 * 110.03359 * 121.42857 * 19 14 13 21 21 O 1.42899 * 110.02849 * 359.97438 * 19 14 13 22 22 C 1.42903 * 113.99842 * 150.00088 * 21 19 14 23 23 F 1.39899 * 109.47271 * 300.00468 * 22 21 19 24 24 F 1.39907 * 109.46867 * 60.00181 * 22 21 19 25 25 H 0.97006 * 120.00587 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47116 * 299.99719 * 10 9 7 27 27 H 1.09004 * 109.47713 * 59.99835 * 10 9 7 28 28 H 0.97003 * 120.00227 * 0.02562 * 13 11 10 29 29 H 1.08997 * 110.48872 * 261.57579 * 16 14 13 30 30 H 1.09004 * 110.48806 * 24.22024 * 16 14 13 31 31 H 1.09004 * 110.75197 * 80.37789 * 17 16 14 32 32 H 1.08999 * 110.75551 * 203.55752 * 17 16 14 33 33 H 1.09004 * 110.48862 * 156.61855 * 18 17 16 34 34 H 1.09000 * 110.48899 * 279.12833 * 18 17 16 35 35 H 1.08997 * 109.47543 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5022 -0.0038 13 7 2.8442 -6.3430 -0.0049 14 6 2.3305 -7.7150 -0.0050 15 1 1.4079 -7.7680 0.5731 16 6 2.0749 -8.1835 -1.4523 17 6 2.4846 -9.6772 -1.4460 18 6 3.7264 -9.6872 -0.5204 19 6 3.3801 -8.6709 0.5888 20 1 2.9666 -9.1883 1.4543 21 8 4.5492 -7.9408 0.9660 22 6 5.2574 -8.5078 2.0701 23 9 4.4189 -8.5515 3.1892 24 9 5.6680 -9.8049 1.7442 25 1 -0.4851 0.8400 0.0004 26 1 3.1245 -3.7304 -0.8928 27 1 3.1246 -3.7320 0.8872 28 1 3.8010 -6.1834 -0.0051 29 1 1.0203 -8.0782 -1.7067 30 1 2.6947 -7.6209 -2.1505 31 1 1.6881 -10.2945 -1.0304 32 1 2.7453 -10.0105 -2.4505 33 1 3.8771 -10.6793 -0.0947 34 1 4.6134 -9.3697 -1.0687 35 1 6.1307 -7.8955 2.2947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337371327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:08 Heat of formation + Delta-G solvation = -203.431312 kcal Electronic energy + Delta-G solvation = -21672.776720 eV Core-core repulsion = 17853.033511 eV Total energy + Delta-G solvation = -3819.743209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.39052 -47.49312 -40.04812 -38.36096 -36.24280 -33.45425 -32.41038 -29.69168 -28.58090 -27.10096 -25.50660 -25.37331 -21.22766 -21.05001 -20.26349 -18.72141 -18.27423 -17.94566 -17.67884 -16.40090 -16.25591 -15.38248 -15.03848 -14.79000 -14.67013 -14.59742 -14.24859 -13.90140 -13.84688 -13.56341 -13.32782 -12.95886 -12.66108 -12.55958 -12.35135 -11.94438 -11.65952 -11.35770 -11.29750 -11.02591 -11.02398 -10.92093 -10.75088 -10.59713 -9.80173 -9.36594 -9.04505 -8.82600 -8.21521 -6.47616 -6.19692 -3.90079 2.50486 3.09184 3.12714 3.24741 3.28322 3.30463 3.38481 3.80571 4.04949 4.16475 4.22509 4.31878 4.52029 4.66968 4.84533 5.11442 5.14856 5.15559 5.24617 5.32966 5.36598 5.55365 5.64978 5.71941 5.73796 5.92795 6.00637 6.11260 6.17527 6.19336 6.74587 7.61074 7.81855 8.36892 8.67004 9.25453 10.87690 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.003397 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.166194 B = 8240.038670 C = 8969.705751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.520 6.520 13 N -0.723 5.723 14 C 0.150 3.850 15 H 0.099 0.901 16 C -0.135 4.135 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.068 3.932 20 H 0.085 0.915 21 O -0.376 6.376 22 C 0.405 3.595 23 F -0.206 7.206 24 F -0.209 7.209 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.405 0.595 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 -20.677 0.882 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.319 3.681 12 O -0.394 6.394 13 N -0.379 5.379 14 C 0.044 3.956 15 H 0.117 0.883 16 C -0.174 4.174 17 C -0.160 4.160 18 C -0.179 4.179 19 C 0.011 3.989 20 H 0.103 0.897 21 O -0.297 6.297 22 C 0.314 3.686 23 F -0.188 7.188 24 F -0.191 7.191 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.241 0.759 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.931 -20.755 0.822 23.024 hybrid contribution 2.391 1.026 0.254 2.615 sum 12.323 -19.729 1.076 23.286 Atomic orbital electron populations 1.70007 1.05954 1.27539 1.46842 1.24980 0.95010 0.98986 0.94542 0.86233 0.79242 0.81276 0.78792 1.19943 1.20824 1.19950 1.22836 0.94887 0.91710 1.58996 0.90989 1.85378 1.04990 0.96267 1.96720 1.23516 1.06492 0.95327 1.04908 1.20334 0.86525 0.86329 0.74928 1.90691 1.15381 1.85545 1.47828 1.45874 1.10452 1.04334 1.77224 1.21625 0.95921 0.81271 0.96761 0.88274 1.22837 1.02887 0.95432 0.96238 1.22405 0.97046 0.96681 0.99870 1.22913 0.99637 0.98647 0.96686 1.23366 0.84752 0.92823 0.97998 0.89710 1.88321 1.40506 1.52231 1.48635 1.23179 0.89463 0.79856 0.76120 1.93081 1.74888 1.96565 1.54295 1.93075 1.90600 1.42945 1.92470 0.92146 0.89257 0.89260 0.75930 0.90259 0.90555 0.90991 0.90701 0.90788 0.89968 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 11 C 0.53 10.08 7.84 -10.99 -0.09 9.99 16 12 O -0.52 -11.80 15.53 5.56 0.09 -11.71 16 13 N -0.72 -10.14 4.83 -52.72 -0.25 -10.40 16 14 C 0.15 1.82 3.23 -66.81 -0.22 1.61 16 15 H 0.10 1.36 7.59 -51.93 -0.39 0.97 16 16 C -0.14 -1.46 6.53 -25.07 -0.16 -1.63 16 17 C -0.12 -0.97 6.91 -24.74 -0.17 -1.15 16 18 C -0.14 -1.13 5.94 -25.02 -0.15 -1.27 16 19 C 0.07 0.65 3.12 -25.55 -0.08 0.58 16 20 H 0.08 0.80 7.24 -51.94 -0.38 0.43 16 21 O -0.38 -3.48 8.41 -35.23 -0.30 -3.78 16 22 C 0.41 3.04 6.26 101.05 0.63 3.68 16 23 F -0.21 -2.04 16.66 2.25 0.04 -2.00 16 24 F -0.21 -1.74 16.62 2.25 0.04 -1.70 16 25 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 27 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 28 H 0.40 4.86 7.18 -40.82 -0.29 4.57 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.17 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -34.36 318.93 -6.30 -40.66 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.40 Total: 1.23 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 0.19 Total: -4.11 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.48 Total: -35.95 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.21 Total: -15.49 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.07 Total: -3.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.36 -6.30 -40.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337371327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.774 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds