Wall clock time and date at job start Tue Mar 31 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00241 * 2 1 4 4 H 1.48500 * 109.46706 * 270.00230 * 3 2 1 5 5 H 1.48497 * 109.46961 * 29.99649 * 3 2 1 6 6 H 1.48497 * 109.47220 * 150.00133 * 3 2 1 7 7 C 1.38799 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00570 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99921 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00131 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46768 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00434 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99486 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00216 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.04860 * 34.96089 * 14 13 11 16 16 C 1.53876 * 110.03266 * 273.54880 * 14 13 11 17 17 C 1.54263 * 106.63651 * 240.73777 * 16 14 13 18 18 C 1.54884 * 104.19983 * 23.58277 * 17 16 14 19 19 C 1.54367 * 110.07261 * 156.42002 * 14 13 11 20 20 H 1.09000 * 110.51365 * 214.32073 * 19 14 13 21 21 O 1.42906 * 110.46238 * 336.96356 * 19 14 13 22 22 C 1.42898 * 113.99719 * 206.21714 * 21 19 14 23 23 F 1.39903 * 109.47244 * 299.99869 * 22 21 19 24 24 F 1.39900 * 109.47368 * 59.99644 * 22 21 19 25 25 H 0.97002 * 119.99810 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46377 * 60.00028 * 10 9 7 27 27 H 1.08993 * 109.46945 * 300.00427 * 10 9 7 28 28 H 0.97007 * 119.99939 * 359.97438 * 13 11 10 29 29 H 1.09002 * 110.03428 * 121.42669 * 16 14 13 30 30 H 1.08995 * 110.02995 * 0.04516 * 16 14 13 31 31 H 1.09005 * 110.48852 * 142.26705 * 17 16 14 32 32 H 1.09010 * 110.48513 * 264.77233 * 17 16 14 33 33 H 1.09007 * 110.75453 * 80.37494 * 18 17 16 34 34 H 1.08998 * 110.75788 * 203.74013 * 18 17 16 35 35 H 1.09001 * 109.47258 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9847 0.0017 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0007 13 7 6.0456 -4.4947 0.0029 14 6 7.4906 -4.7359 0.0026 15 1 7.9975 -3.9692 0.5887 16 6 8.0248 -4.7355 -1.4404 17 6 8.6333 -6.1315 -1.6865 18 6 7.9147 -7.0451 -0.6628 19 6 7.7946 -6.1334 0.5836 20 1 8.7326 -6.1205 1.1386 21 8 6.7224 -6.5702 1.4213 22 6 7.1162 -7.5011 2.4314 23 9 7.6601 -8.6407 1.8290 24 9 8.0747 -6.9103 3.2619 25 1 -0.4850 0.8401 -0.0004 26 1 3.6432 -3.4325 -0.8876 27 1 3.6439 -3.4307 0.8923 28 1 5.4289 -5.2436 0.0036 29 1 8.7911 -3.9687 -1.5547 30 1 7.2091 -4.5551 -2.1404 31 1 8.4278 -6.4634 -2.7042 32 1 9.7074 -6.1177 -1.5004 33 1 6.9285 -7.3328 -1.0274 34 1 8.5176 -7.9256 -0.4408 35 1 6.2462 -7.7840 3.0240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337371328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:10 Heat of formation + Delta-G solvation = -204.174058 kcal Electronic energy + Delta-G solvation = -21691.409900 eV Core-core repulsion = 17871.634483 eV Total energy + Delta-G solvation = -3819.775417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.41719 -47.52126 -40.12054 -38.42948 -36.36795 -33.45019 -32.42667 -29.81905 -28.64509 -27.29119 -25.60143 -25.41830 -21.31506 -21.15149 -20.21882 -18.75497 -18.34906 -17.97973 -17.71216 -16.54586 -16.22403 -15.46925 -15.14814 -14.97191 -14.80421 -14.60280 -14.24084 -13.89103 -13.82824 -13.53512 -13.43783 -13.07534 -12.79027 -12.75463 -12.45711 -12.07578 -11.66880 -11.44291 -11.42775 -11.24682 -10.99778 -10.89742 -10.63015 -10.55246 -9.84502 -9.49279 -9.00308 -8.93227 -8.48229 -6.89990 -6.27804 -3.99197 2.49735 2.81896 2.99660 3.27081 3.33638 3.39580 3.51710 3.70382 3.99695 4.13896 4.28183 4.34388 4.49249 4.61425 4.76952 4.77755 5.05045 5.10717 5.11663 5.19250 5.34016 5.39077 5.54696 5.64854 5.70070 5.80208 5.90200 6.00829 6.06247 6.17701 6.64288 7.68695 7.95403 8.43049 8.53488 9.18563 10.81514 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025365 B = 0.003447 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.621660 B = 8120.021265 C = 8623.652516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.522 6.522 13 N -0.720 5.720 14 C 0.153 3.847 15 H 0.097 0.903 16 C -0.136 4.136 17 C -0.122 4.122 18 C -0.143 4.143 19 C 0.065 3.935 20 H 0.090 0.910 21 O -0.371 6.371 22 C 0.405 3.595 23 F -0.209 7.209 24 F -0.208 7.208 25 H 0.270 0.730 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.404 0.596 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.809 -18.449 1.306 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.396 6.396 13 N -0.375 5.375 14 C 0.047 3.953 15 H 0.115 0.885 16 C -0.174 4.174 17 C -0.160 4.160 18 C -0.181 4.181 19 C 0.007 3.993 20 H 0.108 0.892 21 O -0.292 6.292 22 C 0.313 3.687 23 F -0.191 7.191 24 F -0.190 7.190 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 17.770 -16.720 1.295 24.434 hybrid contribution -0.786 -0.857 0.078 1.166 sum 16.984 -17.577 1.374 24.480 Atomic orbital electron populations 1.69938 1.05930 1.27744 1.48163 1.24707 0.94434 0.98944 0.93183 0.86736 0.81916 0.83290 0.79923 1.19220 1.19960 1.15913 1.22327 0.88321 0.97531 1.58692 0.89398 1.84774 1.09219 1.00178 1.97429 1.23262 0.94019 1.04225 1.05812 1.20285 0.90576 0.82278 0.75032 1.90692 1.58716 1.42209 1.48010 1.45817 1.06544 1.08127 1.76975 1.21567 0.82967 0.94319 0.96440 0.88532 1.22628 1.01498 0.97361 0.95946 1.22279 0.99731 0.94623 0.99354 1.23059 1.02207 0.98054 0.94789 1.23592 0.90121 0.94598 0.90946 0.89163 1.88411 1.35416 1.60440 1.44898 1.23200 0.87490 0.75791 0.82179 1.93072 1.88567 1.52682 1.84766 1.93070 1.68825 1.84481 1.72607 0.91959 0.88553 0.88446 0.76106 0.90479 0.90294 0.90795 0.91190 0.89961 0.90586 0.81516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.85 27.74 -169.99 -4.72 17.13 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 11 C 0.53 9.46 7.84 -10.99 -0.09 9.38 16 12 O -0.52 -11.16 15.54 5.56 0.09 -11.07 16 13 N -0.72 -9.43 4.60 -52.67 -0.24 -9.67 16 14 C 0.15 1.74 3.18 -66.76 -0.21 1.53 16 15 H 0.10 1.27 7.61 -51.93 -0.40 0.87 16 16 C -0.14 -1.36 6.58 -25.61 -0.17 -1.53 16 17 C -0.12 -0.91 6.83 -25.08 -0.17 -1.09 16 18 C -0.14 -1.10 6.06 -24.74 -0.15 -1.25 16 19 C 0.06 0.59 2.96 -25.02 -0.07 0.51 16 20 H 0.09 0.78 7.29 -51.93 -0.38 0.40 16 21 O -0.37 -3.39 9.04 -35.23 -0.32 -3.71 16 22 C 0.41 2.95 6.27 101.05 0.63 3.58 16 23 F -0.21 -1.69 16.25 2.25 0.04 -1.65 16 24 F -0.21 -1.93 16.67 2.25 0.04 -1.89 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 27 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 28 H 0.40 4.49 7.83 -40.82 -0.32 4.18 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.54 7.73 -51.93 -0.40 0.14 16 35 H 0.17 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -34.00 316.42 -5.80 -39.80 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.44 Total: 0.85 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 0.21 Total: -3.06 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.53 Total: -35.55 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.23 Total: -14.78 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.07 Total: -3.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.00 -5.80 -39.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337371328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.374 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds