Wall clock time and date at job start Tue Mar 31 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00241 * 2 1 4 4 H 1.48500 * 109.46706 * 270.00230 * 3 2 1 5 5 H 1.48497 * 109.46961 * 29.99649 * 3 2 1 6 6 H 1.48497 * 109.47220 * 150.00133 * 3 2 1 7 7 C 1.38799 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00570 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99921 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00131 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46768 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00434 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99486 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00216 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.04860 * 34.96089 * 14 13 11 16 16 C 1.53876 * 110.03266 * 273.54880 * 14 13 11 17 17 C 1.54263 * 106.63651 * 240.73777 * 16 14 13 18 18 C 1.54884 * 104.19983 * 23.58277 * 17 16 14 19 19 C 1.54367 * 110.07261 * 156.42002 * 14 13 11 20 20 H 1.09000 * 110.51365 * 214.32073 * 19 14 13 21 21 O 1.42906 * 110.46238 * 336.96356 * 19 14 13 22 22 C 1.42898 * 113.99719 * 206.21714 * 21 19 14 23 23 F 1.39903 * 109.47244 * 299.99869 * 22 21 19 24 24 F 1.39900 * 109.47368 * 59.99644 * 22 21 19 25 25 H 0.97002 * 119.99810 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46377 * 60.00028 * 10 9 7 27 27 H 1.08993 * 109.46945 * 300.00427 * 10 9 7 28 28 H 0.97007 * 119.99939 * 359.97438 * 13 11 10 29 29 H 1.09002 * 110.03428 * 121.42669 * 16 14 13 30 30 H 1.08995 * 110.02995 * 0.04516 * 16 14 13 31 31 H 1.09005 * 110.48852 * 142.26705 * 17 16 14 32 32 H 1.09010 * 110.48513 * 264.77233 * 17 16 14 33 33 H 1.09007 * 110.75453 * 80.37494 * 18 17 16 34 34 H 1.08998 * 110.75788 * 203.74013 * 18 17 16 35 35 H 1.09001 * 109.47258 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9847 0.0017 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0007 13 7 6.0456 -4.4947 0.0029 14 6 7.4906 -4.7359 0.0026 15 1 7.9975 -3.9692 0.5887 16 6 8.0248 -4.7355 -1.4404 17 6 8.6333 -6.1315 -1.6865 18 6 7.9147 -7.0451 -0.6628 19 6 7.7946 -6.1334 0.5836 20 1 8.7326 -6.1205 1.1386 21 8 6.7224 -6.5702 1.4213 22 6 7.1162 -7.5011 2.4314 23 9 7.6601 -8.6407 1.8290 24 9 8.0747 -6.9103 3.2619 25 1 -0.4850 0.8401 -0.0004 26 1 3.6432 -3.4325 -0.8876 27 1 3.6439 -3.4307 0.8923 28 1 5.4289 -5.2436 0.0036 29 1 8.7911 -3.9687 -1.5547 30 1 7.2091 -4.5551 -2.1404 31 1 8.4278 -6.4634 -2.7042 32 1 9.7074 -6.1177 -1.5004 33 1 6.9285 -7.3328 -1.0274 34 1 8.5176 -7.9256 -0.4408 35 1 6.2462 -7.7840 3.0240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337371328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:09 Heat of formation + Delta-G solvation = -228.020575 kcal Electronic energy + Delta-G solvation = -21692.443962 eV Core-core repulsion = 17871.634483 eV Total energy + Delta-G solvation = -3820.809480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.02623 -48.13862 -41.18435 -39.52779 -37.15738 -34.69588 -34.60299 -31.21240 -29.34891 -28.33517 -27.78589 -26.04478 -22.41604 -21.87790 -21.23513 -19.99486 -19.41491 -18.88259 -18.59142 -17.91159 -17.24426 -17.04308 -16.55161 -16.18562 -16.03626 -15.49069 -15.27594 -14.95133 -14.89252 -14.76889 -14.51039 -14.20952 -13.96411 -13.68983 -13.45368 -13.34080 -13.03354 -12.99154 -12.69311 -12.41033 -12.24475 -12.10598 -11.85460 -11.58219 -11.31187 -11.16656 -10.99018 -10.53217 -10.12619 -8.99002 -8.51171 -6.21861 0.98886 1.31754 1.46805 1.54872 1.56941 1.88205 2.24847 2.32242 2.71742 2.76063 2.87251 3.28844 3.45666 3.76372 3.86785 3.90637 3.92793 4.09538 4.23060 4.31869 4.36890 4.45620 4.47757 4.63052 4.84008 4.96031 5.07994 5.15029 5.20873 5.44251 5.63602 5.71284 6.11955 6.48119 6.94153 7.20247 8.61365 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025365 B = 0.003447 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.621660 B = 8120.021265 C = 8623.652516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.110 4.110 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.697 5.697 14 C 0.147 3.853 15 H 0.077 0.923 16 C -0.134 4.134 17 C -0.113 4.113 18 C -0.136 4.136 19 C 0.069 3.931 20 H 0.095 0.905 21 O -0.383 6.383 22 C 0.402 3.598 23 F -0.213 7.213 24 F -0.221 7.221 25 H 0.277 0.723 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.416 0.584 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.060 -19.805 1.268 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.261 4.261 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.350 5.350 14 C 0.041 3.959 15 H 0.095 0.905 16 C -0.173 4.173 17 C -0.151 4.151 18 C -0.173 4.173 19 C 0.011 3.989 20 H 0.113 0.887 21 O -0.304 6.304 22 C 0.311 3.689 23 F -0.195 7.195 24 F -0.203 7.203 25 H 0.086 0.914 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.254 0.746 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 19.023 -18.134 1.258 26.311 hybrid contribution -1.147 -0.608 0.104 1.302 sum 17.876 -18.742 1.362 25.936 Atomic orbital electron populations 1.70014 1.07318 1.29026 1.49184 1.25547 0.95244 1.02209 0.92849 0.85874 0.80680 0.79623 0.80239 1.18650 1.18315 1.16106 1.22471 0.90287 0.96708 1.58258 0.91973 1.84690 1.06385 1.06101 1.97582 1.23249 0.95851 0.99611 1.07362 1.19940 0.89397 0.83281 0.75103 1.90682 1.59216 1.43713 1.50436 1.45595 1.07874 1.06803 1.74768 1.21741 0.81200 0.95462 0.97474 0.90507 1.22575 1.01056 0.99176 0.94478 1.22263 1.00309 0.92567 0.99974 1.23025 1.02503 0.98005 0.93812 1.23541 0.90317 0.93296 0.91707 0.88689 1.88384 1.35592 1.61063 1.45388 1.23803 0.88251 0.75075 0.81777 1.93063 1.88772 1.52766 1.84893 1.93047 1.69583 1.84768 1.72925 0.91357 0.86926 0.86987 0.74617 0.90880 0.91540 0.89692 0.89868 0.89884 0.89485 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.98 13.97 21.65 0.30 -55.67 16 2 C 0.05 2.76 5.50 84.86 0.47 3.23 16 3 Si 0.91 45.10 27.74 68.60 1.90 47.01 16 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 7 C -0.53 -30.95 10.04 67.95 0.68 -30.27 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 9 S -0.17 -8.84 18.55 -56.49 -1.05 -9.89 16 10 C -0.11 -4.17 6.16 71.23 0.44 -3.74 16 11 C 0.54 18.66 7.84 87.66 0.69 19.34 16 12 O -0.56 -24.00 15.54 -3.03 -0.05 -24.05 16 13 N -0.70 -17.26 4.60 -438.93 -2.02 -19.28 16 14 C 0.15 3.17 3.18 45.75 0.15 3.31 16 15 H 0.08 2.00 7.61 -2.39 -0.02 1.98 16 16 C -0.13 -2.53 6.58 31.32 0.21 -2.32 16 17 C -0.11 -1.41 6.83 31.67 0.22 -1.20 16 18 C -0.14 -1.71 6.06 31.88 0.19 -1.52 16 19 C 0.07 1.11 2.96 31.70 0.09 1.21 16 20 H 0.10 1.47 7.29 -2.39 -0.02 1.45 16 21 O -0.38 -6.12 9.04 -148.98 -1.35 -7.47 16 22 C 0.40 4.85 6.27 113.37 0.71 5.56 16 23 F -0.21 -2.91 16.25 44.97 0.73 -2.18 16 24 F -0.22 -3.71 16.67 44.97 0.75 -2.96 16 25 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 27 H 0.11 3.94 8.14 -2.40 -0.02 3.93 16 28 H 0.42 8.37 7.83 -92.70 -0.73 7.65 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.43 7.92 -2.39 -0.02 1.41 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 34 H 0.09 0.96 7.73 -2.39 -0.02 0.95 16 35 H 0.21 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -73.58 316.42 3.42 -70.16 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.36 Total: 10.74 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 3.84 Total: -6.39 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.71 Total: -74.95 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.39 Total: -31.52 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 1.48 Total: -5.14 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -73.58 3.42 -70.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337371328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.865 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds