Wall clock time and date at job start Tue Mar 31 2020 07:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48507 * 109.46682 * 239.99743 * 3 2 1 5 5 H 1.48492 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47404 * 119.99711 * 3 2 1 7 7 C 1.38803 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99879 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99950 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47274 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99805 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00113 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00102 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.05693 * 325.03889 * 14 13 11 16 16 C 1.53876 * 110.03133 * 86.45163 * 14 13 11 17 17 C 1.54263 * 106.63651 * 119.31200 * 16 14 13 18 18 C 1.54884 * 104.19983 * 23.58277 * 17 16 14 19 19 C 1.54367 * 110.04633 * 203.56393 * 14 13 11 20 20 H 1.09000 * 110.51365 * 335.78226 * 19 14 13 21 21 O 1.42901 * 110.57624 * 98.36858 * 19 14 13 22 22 C 1.42902 * 114.00016 * 206.28066 * 21 19 14 23 23 F 1.39894 * 109.47068 * 299.99882 * 22 21 19 24 24 F 1.39898 * 109.46960 * 59.99851 * 22 21 19 25 25 H 0.96996 * 119.99972 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47057 * 59.99888 * 10 9 7 27 27 H 1.09004 * 109.47144 * 300.00536 * 10 9 7 28 28 H 0.96997 * 119.99837 * 359.97438 * 13 11 10 29 29 H 1.09002 * 110.03428 * 0.02562 * 16 14 13 30 30 H 1.08995 * 110.02995 * 238.61939 * 16 14 13 31 31 H 1.09005 * 110.48852 * 142.26705 * 17 16 14 32 32 H 1.09010 * 110.48513 * 264.77233 * 17 16 14 33 33 H 1.09007 * 110.75453 * 80.37494 * 18 17 16 34 34 H 1.08998 * 110.75788 * 203.74013 * 18 17 16 35 35 H 1.09004 * 109.46903 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3432 0.0003 14 6 2.3303 -7.7152 0.0003 15 1 1.4132 -7.7709 0.5867 16 6 2.0622 -8.1775 -1.4427 17 6 2.9658 -9.4033 -1.6888 18 6 3.2424 -9.9622 -0.2710 19 6 3.3894 -8.6768 0.5805 20 1 4.3890 -8.2569 0.4680 21 8 3.1165 -8.9538 1.9556 22 6 4.2724 -9.3082 2.7175 23 9 4.8556 -10.4572 2.1728 24 9 5.1940 -8.2563 2.6833 25 1 -0.4850 0.8400 -0.0004 26 1 3.1244 -3.7314 0.8906 27 1 3.1245 -3.7313 -0.8894 28 1 3.8008 -6.1835 0.0006 29 1 2.3148 -7.3813 -2.1430 30 1 1.0149 -8.4568 -1.5567 31 1 2.4464 -10.1444 -2.2964 32 1 3.8961 -9.1011 -2.1700 33 1 2.4023 -10.5629 0.0781 34 1 4.1652 -10.5422 -0.2576 35 1 3.9814 -9.5025 3.7499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337371329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:11 Heat of formation + Delta-G solvation = -230.685015 kcal Electronic energy + Delta-G solvation = -21544.029748 eV Core-core repulsion = 17723.104729 eV Total energy + Delta-G solvation = -3820.925018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.04085 -48.15048 -41.14856 -39.56216 -37.22692 -34.74877 -34.57910 -31.19600 -29.36155 -28.27075 -27.58580 -26.01279 -22.43565 -22.09019 -21.15246 -19.92236 -19.50128 -18.85228 -18.60880 -17.75118 -17.47758 -16.87948 -16.67683 -16.15317 -16.05257 -15.35301 -15.23347 -14.93481 -14.65010 -14.52860 -14.43905 -14.29683 -14.11140 -13.65175 -13.57432 -13.17439 -12.90217 -12.84308 -12.82611 -12.60670 -12.11745 -11.89343 -11.76732 -11.69325 -11.45735 -11.13039 -10.95091 -10.29098 -10.16476 -8.67324 -8.34688 -6.13142 1.25142 1.44070 1.45580 1.55419 1.57351 1.91327 2.26463 2.30095 2.71854 2.99401 3.24080 3.32511 3.52191 3.72682 3.77575 3.89774 3.95630 4.08611 4.26557 4.28419 4.36160 4.45695 4.48848 4.57364 4.82683 4.93078 5.11212 5.12166 5.23373 5.41307 5.44240 5.61137 6.19382 6.42121 7.06398 7.19279 8.74363 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.003249 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.390294 B = 8615.202000 C = 9267.769437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.710 5.710 14 C 0.145 3.855 15 H 0.076 0.924 16 C -0.132 4.132 17 C -0.112 4.112 18 C -0.133 4.133 19 C 0.069 3.931 20 H 0.094 0.906 21 O -0.389 6.389 22 C 0.400 3.600 23 F -0.212 7.212 24 F -0.219 7.219 25 H 0.271 0.729 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.414 0.586 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.288 -22.420 1.656 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.438 6.438 13 N -0.364 5.364 14 C 0.040 3.960 15 H 0.094 0.906 16 C -0.171 4.171 17 C -0.150 4.150 18 C -0.171 4.171 19 C 0.011 3.989 20 H 0.112 0.888 21 O -0.311 6.311 22 C 0.309 3.691 23 F -0.194 7.194 24 F -0.201 7.201 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.251 0.749 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 11.005 -22.658 1.720 25.248 hybrid contribution 2.070 1.460 -0.034 2.533 sum 13.075 -21.199 1.686 24.964 Atomic orbital electron populations 1.70173 1.07986 1.28710 1.47888 1.26124 0.95954 1.03297 0.93656 0.85005 0.77815 0.75675 0.79512 1.18616 1.20355 1.18676 1.23186 0.95370 0.92045 1.59093 0.89923 1.85563 1.10385 0.99135 1.97058 1.23376 1.03657 0.94287 1.06781 1.20057 0.86244 0.86581 0.74798 1.90691 1.17270 1.86007 1.49868 1.45900 1.10140 1.04649 1.75695 1.21611 0.97224 0.79797 0.97407 0.90572 1.22498 1.01224 0.99143 0.94199 1.22284 1.00057 0.96267 0.96352 1.22955 1.03879 0.95522 0.94701 1.23490 0.98869 0.96549 0.79957 0.88780 1.88482 1.32167 1.87531 1.22877 1.23804 0.75884 0.72028 0.97366 1.93057 1.85815 1.51743 1.88794 1.93049 1.69676 1.60022 1.97358 0.91956 0.87393 0.87080 0.74921 0.91394 0.91191 0.89324 0.89907 0.89839 0.89050 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.55 -31.55 9.50 67.96 0.65 -30.90 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.31 20.57 -56.49 -1.16 -9.48 16 10 C -0.13 -5.20 6.16 71.23 0.44 -4.77 16 11 C 0.54 20.16 7.84 87.66 0.69 20.85 16 12 O -0.56 -26.27 15.54 -3.02 -0.05 -26.32 16 13 N -0.71 -18.71 4.99 -438.93 -2.19 -20.90 16 14 C 0.14 3.46 2.99 45.75 0.14 3.60 16 15 H 0.08 2.30 7.54 -2.39 -0.02 2.29 16 16 C -0.13 -2.73 6.58 31.32 0.21 -2.53 16 17 C -0.11 -1.51 6.83 31.67 0.22 -1.30 16 18 C -0.13 -1.84 6.06 31.88 0.19 -1.65 16 19 C 0.07 1.23 2.76 31.70 0.09 1.32 16 20 H 0.09 1.50 6.87 -2.39 -0.02 1.49 16 21 O -0.39 -7.36 10.36 -148.98 -1.54 -8.91 16 22 C 0.40 5.38 6.27 113.37 0.71 6.09 16 23 F -0.21 -3.08 16.25 44.97 0.73 -2.35 16 24 F -0.22 -3.82 16.66 44.97 0.75 -3.07 16 25 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 27 H 0.11 3.97 8.14 -2.39 -0.02 3.96 16 28 H 0.41 8.21 8.34 -92.71 -0.77 7.43 16 29 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.09 1.07 7.72 -2.39 -0.02 1.05 16 35 H 0.21 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -77.22 320.46 2.98 -74.23 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.35 Total: 15.04 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 3.79 Total: -7.99 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.91 Total: -76.84 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.59 Total: -35.22 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 1.48 Total: -5.42 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.48 kcal Total: -77.22 2.98 -74.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337371329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.453 kcal (2) G-P(sol) polarization free energy of solvation -77.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds