Wall clock time and date at job start Tue Mar 31 2020 07:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99595 * 2 1 4 4 H 1.48505 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47587 * 299.99935 * 3 2 1 6 6 H 1.48505 * 109.47116 * 60.00382 * 3 2 1 7 7 C 1.38799 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99926 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99754 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46812 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00319 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.47020 * 125.64125 * 359.95894 * 13 11 10 15 15 C 1.54327 * 107.26841 * 178.97597 * 14 13 11 16 16 C 1.55165 * 102.94185 * 337.80752 * 15 14 13 17 17 H 1.08997 * 111.03383 * 277.41315 * 16 15 14 18 18 C 1.52999 * 111.00175 * 153.57748 * 16 15 14 19 19 O 1.42905 * 109.46728 * 181.35198 * 18 16 15 20 20 C 1.42899 * 113.99778 * 179.97438 * 19 18 16 21 21 F 1.39904 * 109.47253 * 299.99531 * 20 19 18 22 22 F 1.39902 * 109.47010 * 59.99881 * 20 19 18 23 23 C 1.47417 * 125.65265 * 179.97438 * 13 11 10 24 24 H 0.97001 * 120.00494 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46770 * 60.00352 * 10 9 7 26 26 H 1.09001 * 109.46948 * 299.99905 * 10 9 7 27 27 H 1.08997 * 109.88520 * 298.38894 * 14 13 11 28 28 H 1.09001 * 109.88381 * 59.56430 * 14 13 11 29 29 H 1.09002 * 110.72033 * 219.44936 * 15 14 13 30 30 H 1.09000 * 110.72487 * 96.17052 * 15 14 13 31 31 H 1.09000 * 109.47486 * 61.35137 * 18 16 15 32 32 H 1.09001 * 109.47362 * 301.34414 * 18 16 15 33 33 H 1.08999 * 109.46926 * 179.97438 * 20 19 18 34 34 H 1.09000 * 110.36850 * 85.25472 * 23 13 11 35 35 H 1.09006 * 110.46134 * 322.97943 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0019 10 6 2.5160 -3.8914 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7913 -5.5023 -0.0038 13 7 2.8443 -6.3431 -0.0049 14 6 4.3112 -6.2450 -0.0067 15 6 4.8667 -7.6845 0.0185 16 6 3.6855 -8.5026 0.6043 17 1 3.6718 -8.4456 1.6927 18 6 3.7403 -9.9578 0.1349 19 8 2.6227 -10.6721 0.6668 20 6 2.5783 -12.0488 0.2862 21 9 2.5043 -12.1451 -1.1076 22 9 3.7341 -12.6949 0.7376 23 6 2.4658 -7.7679 -0.0051 24 1 -0.4851 0.8400 0.0004 25 1 3.1245 -3.7321 0.8872 26 1 3.1246 -3.7305 -0.8928 27 1 4.6475 -5.7337 -0.9087 28 1 4.6476 -5.7023 0.8768 29 1 5.7401 -7.7496 0.6675 30 1 5.1078 -8.0227 -0.9892 31 1 4.6649 -10.4176 0.4839 32 1 3.7069 -9.9899 -0.9541 33 1 1.7018 -12.5205 0.7303 34 1 2.2856 -8.1124 -1.0234 35 1 1.5805 -7.9271 0.6107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343037122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:35 Heat of formation + Delta-G solvation = -196.872868 kcal Electronic energy + Delta-G solvation = -21012.153555 eV Core-core repulsion = 17192.694741 eV Total energy + Delta-G solvation = -3819.458814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.46725 -47.58024 -39.95576 -38.34150 -36.96536 -32.62551 -32.42316 -29.71795 -29.32542 -26.62442 -25.50677 -24.90569 -23.00460 -20.90310 -19.39908 -18.68031 -18.25397 -18.12905 -17.67885 -16.65736 -16.48045 -15.53750 -15.01290 -14.84778 -14.79578 -14.39183 -14.19070 -13.96256 -13.92672 -13.63150 -13.50629 -12.99251 -12.64111 -12.60784 -12.56414 -12.21064 -11.81402 -11.57406 -11.46234 -11.07522 -11.04190 -11.00899 -10.80896 -10.73398 -9.80280 -9.40448 -9.07126 -8.50605 -8.22408 -6.49883 -6.21409 -3.92014 2.52635 2.91736 3.07170 3.21711 3.24982 3.26969 3.31459 3.62117 4.08025 4.14941 4.20834 4.26771 4.37607 4.49689 4.81106 4.86328 4.94286 5.06276 5.13742 5.18752 5.26044 5.46053 5.51553 5.62135 5.70593 5.81971 5.88919 5.94169 6.10224 6.14304 6.41522 7.60010 7.67197 8.35735 8.56455 9.23867 10.86108 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.046225 B = 0.002599 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.592827 B =10769.607312 C =11187.887712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.515 6.515 13 N -0.628 5.628 14 C 0.103 3.897 15 C -0.123 4.123 16 C -0.100 4.100 17 H 0.097 0.903 18 C 0.060 3.940 19 O -0.381 6.381 20 C 0.405 3.595 21 F -0.209 7.209 22 F -0.211 7.211 23 C 0.116 3.884 24 H 0.268 0.732 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.065 0.935 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 -23.276 0.763 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.388 6.388 13 N -0.366 5.366 14 C -0.021 4.021 15 C -0.161 4.161 16 C -0.119 4.119 17 H 0.116 0.884 18 C -0.016 4.016 19 O -0.302 6.302 20 C 0.314 3.686 21 F -0.191 7.191 22 F -0.193 7.193 23 C -0.007 4.007 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.185 0.815 34 H 0.083 0.917 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.315 -23.301 0.848 25.108 hybrid contribution 2.307 1.070 -0.237 2.554 sum 11.622 -22.231 0.611 25.093 Atomic orbital electron populations 1.70031 1.05953 1.27348 1.46946 1.25002 0.95036 0.99048 0.94561 0.86107 0.79563 0.81859 0.77898 1.19623 1.20563 1.20567 1.22896 0.94915 0.91577 1.58818 0.90885 1.85418 1.05002 0.96379 1.96705 1.23506 1.06437 0.94952 1.04797 1.20034 0.85684 0.85454 0.75152 1.90712 1.14926 1.85118 1.48086 1.48513 1.06464 1.05754 1.75882 1.21977 0.80654 0.96993 1.02441 1.22649 0.97346 0.93898 1.02158 1.22356 0.96168 0.91383 1.01988 0.88426 1.22671 0.88345 0.91770 0.98768 1.88455 1.48531 1.20265 1.72992 1.23192 0.87516 0.82092 0.75822 1.93074 1.96666 1.95917 1.33420 1.93061 1.55181 1.82190 1.88869 1.22119 0.97460 0.80277 1.00797 0.92231 0.89286 0.89292 0.90990 0.91024 0.89451 0.90154 0.91178 0.91271 0.81516 0.91665 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.04 5.35 36.00 0.19 -2.85 16 11 C 0.55 10.85 7.87 -10.99 -0.09 10.76 16 12 O -0.51 -12.25 16.12 5.56 0.09 -12.16 16 13 N -0.63 -9.25 3.33 -170.54 -0.57 -9.82 16 14 C 0.10 1.07 6.49 -3.06 -0.02 1.05 16 15 C -0.12 -0.89 6.42 -24.89 -0.16 -1.04 16 16 C -0.10 -0.86 3.33 -88.48 -0.29 -1.16 16 17 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 18 C 0.06 0.46 5.10 37.16 0.19 0.65 16 19 O -0.38 -3.26 10.49 -35.23 -0.37 -3.63 16 20 C 0.41 2.63 6.30 101.05 0.64 3.27 16 21 F -0.21 -1.74 16.88 2.25 0.04 -1.70 16 22 F -0.21 -1.62 16.88 2.25 0.04 -1.59 16 23 C 0.12 1.45 6.23 -2.55 -0.02 1.43 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 26 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 31 H 0.07 0.45 7.73 -51.93 -0.40 0.05 16 32 H 0.07 0.52 7.69 -51.93 -0.40 0.12 16 33 H 0.17 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 35 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -35.61 323.05 -6.32 -41.93 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.55 Total: -3.96 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 0.64 Total: -0.89 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.17 Total: -35.38 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.28 Total: -15.79 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.29 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.61 -6.32 -41.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343037122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.945 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds