Wall clock time and date at job start Tue Mar 31 2020 07:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99595 * 2 1 4 4 H 1.48505 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47587 * 299.99935 * 3 2 1 6 6 H 1.48505 * 109.47116 * 60.00382 * 3 2 1 7 7 C 1.38799 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99926 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99754 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46812 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00319 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.47020 * 125.64125 * 359.95894 * 13 11 10 15 15 C 1.54327 * 107.26841 * 178.97597 * 14 13 11 16 16 C 1.55165 * 102.94185 * 337.80752 * 15 14 13 17 17 H 1.08997 * 111.03383 * 277.41315 * 16 15 14 18 18 C 1.52999 * 111.00175 * 153.57748 * 16 15 14 19 19 O 1.42905 * 109.46728 * 181.35198 * 18 16 15 20 20 C 1.42899 * 113.99778 * 179.97438 * 19 18 16 21 21 F 1.39904 * 109.47253 * 299.99531 * 20 19 18 22 22 F 1.39902 * 109.47010 * 59.99881 * 20 19 18 23 23 C 1.47417 * 125.65265 * 179.97438 * 13 11 10 24 24 H 0.97001 * 120.00494 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46770 * 60.00352 * 10 9 7 26 26 H 1.09001 * 109.46948 * 299.99905 * 10 9 7 27 27 H 1.08997 * 109.88520 * 298.38894 * 14 13 11 28 28 H 1.09001 * 109.88381 * 59.56430 * 14 13 11 29 29 H 1.09002 * 110.72033 * 219.44936 * 15 14 13 30 30 H 1.09000 * 110.72487 * 96.17052 * 15 14 13 31 31 H 1.09000 * 109.47486 * 61.35137 * 18 16 15 32 32 H 1.09001 * 109.47362 * 301.34414 * 18 16 15 33 33 H 1.08999 * 109.46926 * 179.97438 * 20 19 18 34 34 H 1.09000 * 110.36850 * 85.25472 * 23 13 11 35 35 H 1.09006 * 110.46134 * 322.97943 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0019 10 6 2.5160 -3.8914 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7913 -5.5023 -0.0038 13 7 2.8443 -6.3431 -0.0049 14 6 4.3112 -6.2450 -0.0067 15 6 4.8667 -7.6845 0.0185 16 6 3.6855 -8.5026 0.6043 17 1 3.6718 -8.4456 1.6927 18 6 3.7403 -9.9578 0.1349 19 8 2.6227 -10.6721 0.6668 20 6 2.5783 -12.0488 0.2862 21 9 2.5043 -12.1451 -1.1076 22 9 3.7341 -12.6949 0.7376 23 6 2.4658 -7.7679 -0.0051 24 1 -0.4851 0.8400 0.0004 25 1 3.1245 -3.7321 0.8872 26 1 3.1246 -3.7305 -0.8928 27 1 4.6475 -5.7337 -0.9087 28 1 4.6476 -5.7023 0.8768 29 1 5.7401 -7.7496 0.6675 30 1 5.1078 -8.0227 -0.9892 31 1 4.6649 -10.4176 0.4839 32 1 3.7069 -9.9899 -0.9541 33 1 1.7018 -12.5205 0.7303 34 1 2.2856 -8.1124 -1.0234 35 1 1.5805 -7.9271 0.6107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343037122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:35 Heat of formation + Delta-G solvation = -221.940468 kcal Electronic energy + Delta-G solvation = -21013.240568 eV Core-core repulsion = 17192.694741 eV Total energy + Delta-G solvation = -3820.545826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.01607 -48.13900 -41.12514 -39.27147 -37.98969 -34.59539 -33.71256 -30.92709 -30.42216 -27.79605 -27.30235 -25.67750 -23.90743 -21.64677 -20.76339 -19.66183 -19.21259 -18.79577 -18.67713 -18.04694 -17.51692 -16.89386 -16.69137 -16.19365 -15.74474 -15.63820 -15.27383 -14.91277 -14.63300 -14.51041 -14.41972 -14.25359 -14.02704 -13.76183 -13.40754 -13.16646 -13.12154 -13.00621 -12.91508 -12.60901 -12.23322 -12.16531 -11.76191 -11.70628 -11.41890 -11.16488 -11.00064 -10.29324 -9.73279 -8.69712 -8.35467 -6.14603 1.22951 1.41763 1.44581 1.53031 1.57044 1.99393 2.11171 2.26412 2.75925 2.98755 3.21935 3.43103 3.49374 3.69188 3.78389 3.88549 3.91484 4.18128 4.23794 4.24776 4.30976 4.39939 4.43624 4.56371 4.69063 4.81128 4.89705 5.00281 5.21114 5.34047 5.41178 5.52278 6.19328 6.35907 7.05535 7.07996 8.74223 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.046225 B = 0.002599 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.592827 B =10769.607312 C =11187.887712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.544 3.456 12 O -0.569 6.569 13 N -0.620 5.620 14 C 0.088 3.912 15 C -0.109 4.109 16 C -0.087 4.087 17 H 0.098 0.902 18 C 0.060 3.940 19 O -0.399 6.399 20 C 0.402 3.598 21 F -0.221 7.221 22 F -0.218 7.218 23 C 0.110 3.890 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.206 0.794 34 H 0.067 0.933 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.590 -23.912 0.879 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.691 4.691 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.269 4.269 11 C 0.332 3.668 12 O -0.448 6.448 13 N -0.354 5.354 14 C -0.033 4.033 15 C -0.146 4.146 16 C -0.107 4.107 17 H 0.116 0.884 18 C -0.016 4.016 19 O -0.321 6.321 20 C 0.312 3.688 21 F -0.203 7.203 22 F -0.200 7.200 23 C -0.013 4.013 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.222 0.778 34 H 0.086 0.914 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.538 -23.985 0.962 27.081 hybrid contribution 1.369 1.113 -0.276 1.786 sum 13.907 -22.872 0.687 26.777 Atomic orbital electron populations 1.70198 1.08040 1.28603 1.48030 1.26172 0.95998 1.03426 0.93693 0.84864 0.78616 0.76112 0.78083 1.17890 1.19912 1.19909 1.23214 0.95329 0.91741 1.58853 0.89816 1.85629 1.10643 0.99419 1.97042 1.23295 1.03372 0.93775 1.06485 1.19839 0.85462 0.86113 0.75383 1.90687 1.17197 1.85812 1.51085 1.48481 1.08156 1.05593 1.73217 1.22404 0.77639 0.99827 1.03460 1.22682 0.97257 0.90858 1.03815 1.22282 0.94673 0.91897 1.01806 0.88394 1.22710 0.88955 0.91011 0.98934 1.88444 1.49004 1.21401 1.73281 1.23781 0.88385 0.81383 0.75295 1.93049 1.96720 1.95915 1.34623 1.93045 1.55868 1.82205 1.88865 1.22299 0.98705 0.79341 1.00924 0.91961 0.87406 0.87416 0.89955 0.90029 0.86398 0.88517 0.89349 0.91055 0.77817 0.91427 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.30 9.50 67.95 0.65 -30.65 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.79 20.57 -56.49 -1.16 -9.96 16 10 C -0.12 -4.89 5.35 71.23 0.38 -4.51 16 11 C 0.54 21.77 7.87 87.65 0.69 22.46 16 12 O -0.57 -28.34 16.12 -3.04 -0.05 -28.39 16 13 N -0.62 -17.65 3.33 -811.86 -2.70 -20.36 16 14 C 0.09 1.58 6.49 86.73 0.56 2.15 16 15 C -0.11 -1.14 6.42 31.79 0.20 -0.94 16 16 C -0.09 -1.31 3.33 -9.41 -0.03 -1.34 16 17 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 18 C 0.06 0.77 5.10 71.98 0.37 1.14 16 19 O -0.40 -6.19 10.49 -148.98 -1.56 -7.75 16 20 C 0.40 4.49 6.30 113.37 0.71 5.21 16 21 F -0.22 -3.38 16.88 44.97 0.76 -2.62 16 22 F -0.22 -2.93 16.88 44.97 0.76 -2.17 16 23 C 0.11 2.67 6.23 86.85 0.54 3.21 16 24 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 26 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.77 8.04 -2.39 -0.02 0.75 16 31 H 0.09 0.85 7.73 -2.39 -0.02 0.83 16 32 H 0.07 0.90 7.69 -2.39 -0.02 0.88 16 33 H 0.21 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 1.62 8.00 -2.39 -0.02 1.60 16 35 H 0.06 1.71 8.04 -2.38 -0.02 1.69 16 Total: -1.00 -80.94 323.05 4.00 -76.95 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.10 Total: 6.97 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 4.54 Total: -2.14 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -2.41 Total: -76.60 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.61 Total: -36.14 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.52 Total: -4.79 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.96 kcal Total: -80.94 4.00 -76.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343037122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.992 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds