Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00188 * 3 2 1 5 5 H 1.48502 * 109.47156 * 29.99930 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99524 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99482 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.34227 * 126.56783 * 114.68768 * 15 12 11 17 17 N 1.36917 * 109.91220 * 179.89718 * 16 15 12 18 18 H 0.97005 * 124.98423 * 180.14214 * 17 16 15 19 19 C 1.37422 * 110.02785 * 0.38308 * 17 16 15 20 20 N 1.32651 * 133.19523 * 179.75600 * 19 17 16 21 21 C 1.31589 * 121.66913 * 180.02562 * 20 19 17 22 22 C 1.38669 * 121.58590 * 0.02562 * 21 20 19 23 23 C 1.38198 * 119.40641 * 359.96584 * 22 21 20 24 24 C 1.39695 * 118.04306 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 27 27 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 28 28 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 29 29 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 30 30 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 31 31 H 1.07998 * 125.04389 * 0.03109 * 16 15 12 32 32 H 1.08004 * 119.20672 * 179.97438 * 21 20 19 33 33 H 1.07996 * 120.29382 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.97706 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9309 0.0012 12 16 2.2999 -6.3415 -0.3632 13 8 1.3392 -7.3810 -0.2378 14 8 3.0291 -6.0971 -1.5581 15 6 3.4954 -6.6136 0.9023 16 6 3.5051 -7.6203 1.7901 17 7 4.5903 -7.5027 2.6166 18 1 4.8102 -8.1147 3.3364 19 6 5.3194 -6.3875 2.2802 20 7 6.4277 -5.8460 2.7681 21 6 6.9412 -4.7463 2.2597 22 6 6.3490 -4.0965 1.1873 23 6 5.1920 -4.6132 0.6357 24 6 4.6646 -5.7815 1.1910 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.5677 -4.9451 0.2190 31 1 2.7676 -8.4075 1.8431 32 1 7.8452 -4.3395 2.6885 33 1 6.7881 -3.1948 0.7867 34 1 4.7099 -4.1281 -0.2001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343975639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = -10.540629 kcal Electronic energy + Delta-G solvation = -21353.266207 eV Core-core repulsion = 17992.576552 eV Total energy + Delta-G solvation = -3360.689655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71354 -38.03906 -36.89398 -35.55720 -35.40726 -33.13211 -32.72386 -30.36250 -29.51252 -29.12737 -24.54966 -23.89774 -22.78427 -22.24711 -21.08885 -18.85953 -18.66577 -17.33331 -16.99664 -16.25389 -16.24084 -15.81237 -15.57584 -15.14699 -14.76454 -14.54247 -14.04134 -13.78443 -13.49881 -13.00538 -12.60642 -12.50645 -12.28449 -11.87811 -11.80358 -11.68371 -11.31586 -11.25198 -11.08976 -10.70008 -10.61994 -10.45795 -9.61622 -9.51156 -9.27918 -8.97064 -8.68948 -8.56384 -8.40808 -6.08659 -4.12064 0.67970 0.83209 1.21701 2.00954 2.45026 3.28665 3.35003 3.36928 3.46223 3.77015 3.96590 4.27452 4.35461 4.40653 4.65927 4.74993 4.97527 5.10976 5.20639 5.28345 5.42337 5.68347 5.78223 6.06874 6.09344 6.19603 6.21763 6.46306 6.66838 6.72717 6.94831 7.43955 7.55551 7.64911 7.81414 7.89810 8.27243 8.93539 9.52511 11.02809 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.005442 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.315287 B = 5143.939660 C = 6526.014508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.018 3.982 10 C 0.117 3.883 11 N -1.110 6.110 12 S 2.719 3.281 13 O -0.978 6.978 14 O -0.959 6.959 15 C -0.743 4.743 16 C 0.201 3.799 17 N -0.571 5.571 18 H 0.424 0.576 19 C 0.276 3.724 20 N -0.497 5.497 21 C 0.134 3.866 22 C -0.182 4.182 23 C -0.034 4.034 24 C -0.083 4.083 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.417 0.583 31 H 0.199 0.801 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.559 -13.708 5.298 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.021 4.021 10 C -0.008 4.008 11 N -0.872 5.872 12 S 2.806 3.194 13 O -0.968 6.968 14 O -0.949 6.949 15 C -0.836 4.836 16 C 0.067 3.933 17 N -0.176 5.176 18 H 0.262 0.738 19 C 0.044 3.956 20 N -0.210 5.210 21 C -0.030 4.030 22 C -0.203 4.203 23 C -0.060 4.060 24 C -0.090 4.090 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.252 0.748 31 H 0.216 0.784 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.918 -14.649 5.377 18.489 hybrid contribution 0.087 1.238 0.551 1.358 sum 10.005 -13.410 5.928 17.750 Atomic orbital electron populations 1.69957 1.06092 1.26853 1.50213 1.24995 0.94863 0.99340 0.95042 0.86551 0.79795 0.83199 0.78213 1.20520 1.21248 1.19767 1.21070 0.93156 0.90470 1.51526 0.92251 1.19293 0.94068 0.90514 0.98245 1.21784 0.96230 0.82768 1.00000 1.55457 1.21364 1.22133 1.88224 1.00990 0.72626 0.72313 0.73466 1.93536 1.60085 1.55754 1.87429 1.93576 1.73796 1.85057 1.42447 1.32142 1.18797 1.07602 1.25100 1.21868 0.87862 0.96876 0.86732 1.41837 1.21907 1.22914 1.30917 0.73754 1.18405 0.92766 0.89939 0.94494 1.66481 1.10162 1.12919 1.31409 1.22519 0.98364 0.89239 0.92914 1.21992 0.97149 1.02383 0.98787 1.21401 0.94239 0.92113 0.98251 1.19000 0.95382 0.96687 0.97894 0.92835 0.95501 0.95793 0.92902 0.91443 0.74836 0.78385 0.81879 0.83641 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.42 5.12 -27.88 -0.14 0.28 16 10 C 0.12 2.26 4.98 -4.04 -0.02 2.24 16 11 N -1.11 -18.36 6.00 -10.61 -0.06 -18.43 16 12 S 2.72 42.63 5.91 -107.50 -0.64 41.99 16 13 O -0.98 -15.91 17.76 -57.17 -1.02 -16.93 16 14 O -0.96 -17.92 17.50 -57.17 -1.00 -18.92 16 15 C -0.74 -10.44 6.35 -37.72 -0.24 -10.68 16 16 C 0.20 2.14 11.47 -16.69 -0.19 1.95 16 17 N -0.57 -5.94 6.05 -12.15 -0.07 -6.01 16 18 H 0.42 2.86 8.96 -40.82 -0.37 2.50 16 19 C 0.28 3.84 8.43 -155.69 -1.31 2.53 16 20 N -0.50 -6.77 10.39 -12.27 -0.13 -6.90 16 21 C 0.13 1.57 11.14 -17.50 -0.19 1.38 16 22 C -0.18 -2.24 10.10 -39.44 -0.40 -2.63 16 23 C -0.03 -0.50 8.73 -39.05 -0.34 -0.84 16 24 C -0.08 -1.26 6.28 -105.11 -0.66 -1.92 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.98 6.72 -51.93 -0.35 0.63 16 29 H 0.07 1.30 6.88 -51.93 -0.36 0.94 16 30 H 0.42 6.32 8.65 -34.47 -0.30 6.02 16 31 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 2.22 6.07 -52.49 -0.32 1.91 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -35.31 308.70 -9.80 -45.12 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.34 Total: 5.08 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.91 Total: -20.39 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.47 Total: -56.38 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -2.02 Total: -35.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 42.63 SS G_CDS: -0.64 Total: 41.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.31 -9.80 -45.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343975639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.575 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds