Wall clock time and date at job start Tue Mar 31 2020 06:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99917 * 2 1 4 4 H 1.48500 * 109.47083 * 239.99684 * 3 2 1 5 5 H 1.48506 * 109.46585 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47209 * 119.99134 * 3 2 1 7 7 C 1.38802 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00333 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46853 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00072 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09002 * 115.54708 * 350.72784 * 14 13 11 16 16 C 1.52999 * 117.50077 * 136.39370 * 14 13 11 17 17 C 1.52990 * 117.50245 * 205.01646 * 14 13 11 18 18 H 1.09003 * 117.50106 * 145.01744 * 17 14 13 19 19 C 1.50700 * 117.49893 * 0.02562 * 17 14 13 20 20 C 1.38241 * 119.97400 * 299.72124 * 19 17 14 21 21 C 1.38203 * 120.02693 * 179.76495 * 20 19 17 22 22 C 1.38457 * 119.97176 * 0.51234 * 21 20 19 23 23 F 1.35098 * 120.02402 * 179.76380 * 22 21 20 24 24 C 1.38454 * 119.94982 * 359.74723 * 22 21 20 25 25 C 1.38196 * 119.97606 * 359.97438 * 24 22 21 26 26 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46793 * 60.00091 * 10 9 7 28 28 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 29 29 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 30 30 H 1.09001 * 117.50198 * 214.98735 * 16 14 13 31 31 H 1.09005 * 117.49690 * 359.97438 * 16 14 13 32 32 H 1.08004 * 119.98775 * 0.02562 * 20 19 17 33 33 H 1.08003 * 120.01350 * 180.25346 * 21 20 19 34 34 H 1.08001 * 120.01474 * 180.02562 * 24 22 21 35 35 H 1.08001 * 119.98894 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0030 12 8 0.7913 -5.5023 0.0030 13 7 2.8444 -6.3430 0.0037 14 6 2.3308 -7.7150 0.0051 15 1 1.2571 -7.8148 0.1640 16 6 3.0032 -8.7220 -0.9302 17 6 3.2349 -8.8073 0.5797 18 1 2.7562 -9.6259 1.1170 19 6 4.5855 -8.3894 1.1015 20 6 5.4979 -7.7891 0.2540 21 6 6.7350 -7.4010 0.7326 22 6 7.0644 -7.6234 2.0589 23 9 8.2752 -7.2488 2.5266 24 6 6.1519 -8.2296 2.9055 25 6 4.9133 -8.6115 2.4261 26 1 -0.4850 0.8400 -0.0004 27 1 3.1239 -3.7308 0.8925 28 1 3.1254 -3.7316 -0.8875 29 1 3.8012 -6.1834 0.0040 30 1 2.3719 -9.4846 -1.3864 31 1 3.8274 -8.3636 -1.5468 32 1 5.2423 -7.6194 -0.7815 33 1 7.4461 -6.9283 0.0712 34 1 6.4076 -8.4031 3.9403 35 1 4.2014 -9.0848 3.0862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345479340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:29 Heat of formation + Delta-G solvation = -54.931884 kcal Electronic energy + Delta-G solvation = -20073.180572 eV Core-core repulsion = 16690.646006 eV Total energy + Delta-G solvation = -3382.534566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90310 -41.24857 -40.03844 -37.84949 -34.59163 -34.15349 -32.14340 -31.25333 -30.36922 -27.67070 -24.83942 -24.04793 -23.21898 -21.80845 -21.31808 -19.86613 -18.74063 -18.08955 -17.66505 -17.23210 -16.87983 -16.60072 -16.41892 -16.26856 -15.73048 -15.43698 -15.10832 -14.71728 -14.51219 -14.42360 -14.13952 -13.87934 -13.49614 -13.17601 -13.00563 -12.87588 -12.63283 -12.51161 -12.32969 -11.94385 -11.77084 -11.46004 -11.13204 -11.00930 -10.29927 -10.10000 -9.95238 -9.32899 -8.67123 -8.34814 -6.13073 0.06847 0.23617 1.25058 1.43750 1.45557 1.51947 1.55594 2.17398 2.27249 2.47240 2.99324 3.08162 3.28198 3.30220 3.56465 3.73684 3.80002 3.88415 3.94142 3.98191 4.26241 4.26511 4.27921 4.46989 4.50339 4.79505 4.87969 4.96836 5.00737 5.12502 5.16549 5.27362 5.41332 5.48360 5.53546 5.89199 6.19305 6.40955 7.06464 7.18037 8.74175 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.003558 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.567770 B = 7866.689707 C = 9202.561865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.082 0.918 9 S -0.144 6.144 10 C -0.132 4.132 11 C 0.539 3.461 12 O -0.559 6.559 13 N -0.687 5.687 14 C 0.068 3.932 15 H 0.127 0.873 16 C -0.166 4.166 17 C -0.111 4.111 18 H 0.144 0.856 19 C -0.066 4.066 20 C -0.107 4.107 21 C -0.150 4.150 22 C 0.070 3.930 23 F -0.152 7.152 24 C -0.153 4.153 25 C -0.086 4.086 26 H 0.272 0.728 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.410 0.590 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.715 -20.735 1.535 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.697 4.697 8 H 0.100 0.900 9 S 0.083 5.917 10 C -0.283 4.283 11 C 0.325 3.675 12 O -0.437 6.437 13 N -0.340 5.340 14 C -0.038 4.038 15 H 0.144 0.856 16 C -0.204 4.204 17 C -0.130 4.130 18 H 0.162 0.838 19 C -0.066 4.066 20 C -0.125 4.125 21 C -0.169 4.169 22 C 0.051 3.949 23 F -0.130 7.130 24 C -0.171 4.171 25 C -0.104 4.104 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.248 0.752 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.627 -20.947 1.554 24.508 hybrid contribution 2.255 1.475 0.217 2.703 sum 14.882 -19.472 1.770 24.572 Atomic orbital electron populations 1.70164 1.07937 1.28721 1.47856 1.26095 0.95935 1.03210 0.93648 0.85031 0.77852 0.75805 0.79479 1.18628 1.20288 1.18780 1.23177 0.95342 0.92099 1.59127 0.90023 1.85527 1.10122 0.98986 1.97046 1.23379 1.03788 0.94505 1.06629 1.20003 0.86223 0.86457 0.74809 1.90682 1.17140 1.85938 1.49932 1.45217 1.09834 1.04199 1.74722 1.21793 0.97799 0.78299 1.05902 0.85570 1.23752 1.03542 1.01288 0.91854 1.21675 0.93231 1.00668 0.97450 0.83840 1.19337 0.94461 0.98799 0.94028 1.21178 0.92425 0.97945 1.00943 1.21354 0.98877 1.02509 0.94132 1.18046 0.81671 1.01284 0.93946 1.91476 1.42705 1.89636 1.89225 1.21383 0.94070 1.00606 1.01057 1.21101 0.95706 0.98460 0.95087 0.91933 0.87662 0.87172 0.75209 0.85523 0.87095 0.83337 0.83319 0.83346 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.84 13.22 21.65 0.29 -55.55 16 2 C 0.02 0.92 5.49 84.86 0.47 1.38 16 3 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -31.44 9.50 67.96 0.65 -30.79 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.14 -7.98 20.57 -56.49 -1.16 -9.15 16 10 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 11 C 0.54 19.78 7.85 87.66 0.69 20.47 16 12 O -0.56 -25.44 15.43 -3.03 -0.05 -25.48 16 13 N -0.69 -17.38 5.33 -442.55 -2.36 -19.74 16 14 C 0.07 1.40 6.38 44.99 0.29 1.68 16 15 H 0.13 3.09 7.40 -2.39 -0.02 3.07 16 16 C -0.17 -2.16 9.78 30.59 0.30 -1.86 16 17 C -0.11 -1.51 6.04 -11.55 -0.07 -1.58 16 18 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 19 C -0.07 -0.98 5.17 -19.86 -0.10 -1.08 16 20 C -0.11 -1.54 7.46 22.26 0.17 -1.37 16 21 C -0.15 -2.40 10.03 22.31 0.22 -2.18 16 22 C 0.07 1.29 7.30 22.37 0.16 1.46 16 23 F -0.15 -3.22 17.27 44.97 0.78 -2.45 16 24 C -0.15 -2.44 10.03 22.31 0.22 -2.22 16 25 C -0.09 -1.24 9.73 22.26 0.22 -1.02 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.41 8.43 6.21 -92.71 -0.58 7.86 16 30 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 1.25 6.17 -2.38 -0.01 1.24 16 32 H 0.15 1.65 5.83 -2.91 -0.02 1.63 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -75.42 322.09 3.72 -71.70 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.55 Total: 17.03 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 3.65 Total: -21.93 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -2.07 Total: -75.29 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.15 kcal Total: -75.42 3.72 -71.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345479340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.763 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds