Wall clock time and date at job start Tue Mar 31 2020 07:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30177 * 126.80212 * 2 1 4 4 O 1.20920 * 111.60298 * 180.02562 * 3 2 1 5 5 C 1.34031 * 111.56920 * 359.75817 * 4 3 2 6 6 C 1.50705 * 126.77660 * 180.28770 * 5 4 3 7 7 C 1.35450 * 106.44966 * 0.38025 * 5 4 3 8 8 C 1.50698 * 128.00950 * 179.90674 * 7 5 4 9 9 C 1.50697 * 109.47544 * 269.68346 * 8 7 5 10 10 N 1.29945 * 126.28567 * 270.02857 * 9 8 7 11 11 O 1.21304 * 110.24811 * 179.68452 * 10 9 8 12 12 C 1.33639 * 109.81079 * 0.46470 * 11 10 9 13 13 C 1.50706 * 126.55140 * 179.80665 * 12 11 10 14 14 S 1.81003 * 109.46853 * 269.68484 * 13 12 11 15 15 C 1.76196 * 99.99846 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00030 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99637 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00513 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99570 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47213 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46950 * 120.00258 * 19 17 15 22 22 H 1.48503 * 109.47177 * 240.00017 * 19 17 15 23 23 N 1.31134 * 106.89898 * 359.53961 * 12 11 10 24 24 H 1.08996 * 109.47007 * 269.97712 * 1 2 3 25 25 H 1.08995 * 109.47381 * 29.98149 * 1 2 3 26 26 H 1.09005 * 109.46844 * 149.97858 * 1 2 3 27 27 H 1.08993 * 109.47395 * 270.11315 * 6 5 4 28 28 H 1.09001 * 109.46754 * 30.11736 * 6 5 4 29 29 H 1.08999 * 109.46982 * 150.11335 * 6 5 4 30 30 H 1.09002 * 109.47107 * 149.68328 * 8 7 5 31 31 H 1.08999 * 109.47023 * 29.68717 * 8 7 5 32 32 H 1.09000 * 109.47318 * 29.68037 * 13 12 11 33 33 H 1.09000 * 109.47161 * 149.68668 * 13 12 11 34 34 H 0.96995 * 120.00407 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 4.9022 -1.3694 0.0114 7 6 2.3540 -1.1320 -0.0004 8 6 1.9592 -2.5864 0.0001 9 6 1.8263 -3.0714 -1.4205 10 7 0.7478 -3.0440 -2.1448 11 8 0.9700 -3.5015 -3.2461 12 6 2.2476 -3.8848 -3.3280 13 6 2.9234 -4.5062 -4.5232 14 16 2.7724 -6.3076 -4.4327 15 6 3.6227 -6.7604 -5.9080 16 1 4.0416 -5.9963 -6.5460 17 6 3.7530 -8.0991 -6.2509 18 7 3.2411 -9.0303 -5.4741 19 14 4.6538 -8.5790 -7.8154 20 1 5.1309 -7.3548 -8.5073 21 1 5.8156 -9.4387 -7.4738 22 1 3.7315 -9.3253 -8.7085 23 7 2.8024 -3.6116 -2.1717 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 5.2202 -1.5549 -1.0145 28 1 5.6636 -0.7849 0.5279 29 1 4.7628 -2.3201 0.5261 30 1 1.0055 -2.7038 0.5147 31 1 2.7233 -3.1701 0.5134 32 1 2.4486 -4.1473 -5.4364 33 1 3.9777 -4.2297 -4.5290 34 1 3.3325 -9.9658 -5.7135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350484414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:15 Heat of formation + Delta-G solvation = 113.677049 kcal Electronic energy + Delta-G solvation = -20455.745298 eV Core-core repulsion = 17100.442125 eV Total energy + Delta-G solvation = -3355.303172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.31455 -45.06704 -36.61426 -35.12020 -33.88573 -33.12704 -32.59228 -29.87340 -28.85177 -28.42364 -27.28373 -25.66728 -23.59850 -22.40930 -21.13390 -20.19577 -18.07179 -17.90879 -17.78341 -17.21631 -16.76228 -14.95395 -14.89326 -14.67145 -14.51927 -14.34426 -14.06186 -13.62642 -13.33958 -13.27089 -13.08528 -12.84495 -12.80041 -12.57832 -12.38985 -11.88932 -11.40834 -11.17762 -11.16546 -11.14251 -10.91993 -10.75946 -10.26378 -10.04524 -9.47479 -9.34224 -9.22600 -8.58404 -6.77661 -6.39386 -4.14085 1.23111 1.35518 1.94603 2.36525 2.94231 3.01347 3.14034 3.19228 3.23812 3.38841 3.81228 3.98932 4.03809 4.14337 4.31305 4.62303 4.77398 4.98395 5.05497 5.10737 5.20628 5.25927 5.28290 5.34331 5.37645 5.49157 5.56605 5.61076 5.70807 5.82163 5.87291 5.99129 6.10758 6.22505 7.45594 8.11018 8.19772 8.40574 9.06970 10.68630 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031102 B = 0.003128 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.054150 B = 8949.221927 C = 9355.270772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.033 3.967 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.008 4.008 6 C -0.075 4.075 7 C -0.207 4.207 8 C 0.056 3.944 9 C 0.169 3.831 10 N -0.388 5.388 11 O 0.077 5.923 12 C 0.229 3.771 13 C -0.043 4.043 14 S -0.081 6.081 15 C -0.526 4.526 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.924 3.076 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.478 5.478 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 13.851 10.682 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 N -0.077 5.077 4 O 0.031 5.969 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.212 4.212 8 C 0.017 3.983 9 C -0.104 4.104 10 N -0.098 5.098 11 O 0.019 5.981 12 C 0.009 3.991 13 C -0.192 4.192 14 S 0.145 5.855 15 C -0.674 4.674 16 H 0.099 0.901 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.750 3.250 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.204 1.204 23 N -0.213 5.213 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.740 14.676 12.073 19.083 hybrid contribution 1.016 -0.503 -2.058 2.349 sum -0.724 14.173 10.015 17.370 Atomic orbital electron populations 1.20217 0.85846 1.04266 1.03327 1.23459 0.98990 0.88289 1.01867 1.73838 0.89250 1.23836 1.20787 1.84801 1.21669 1.22467 1.67934 1.24386 0.98371 0.83680 1.00699 1.20416 0.89506 0.98459 1.04874 1.20562 0.92032 0.96342 1.12265 1.17976 1.04490 0.88815 0.87000 1.25444 0.85384 0.99769 0.99803 1.74539 1.23804 1.18404 0.93032 1.85289 1.29755 1.56374 1.26633 1.28199 0.81362 0.93346 0.96197 1.21984 1.01774 1.04092 0.91360 1.85190 1.75225 0.89910 1.35198 1.22750 1.41676 0.95092 1.07894 0.90108 1.25027 0.95331 0.95217 0.97928 1.70000 1.42358 1.00919 1.36907 0.86021 0.79075 0.78727 0.81157 1.19375 1.20438 1.20438 1.71889 1.29810 1.17843 1.01749 0.90054 0.90531 0.89534 0.88728 0.89869 0.88609 0.87832 0.87252 0.87979 0.87118 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 36.01 0.37 -0.41 16 2 C 0.03 0.42 7.33 -82.10 -0.60 -0.18 16 3 N -0.37 -5.13 12.07 33.42 0.40 -4.73 16 4 O 0.09 1.21 11.20 17.20 0.19 1.40 16 5 C -0.01 -0.09 7.49 -35.30 -0.26 -0.35 16 6 C -0.08 -0.61 10.30 36.01 0.37 -0.24 16 7 C -0.21 -2.48 5.56 -104.42 -0.58 -3.06 16 8 C 0.06 0.64 6.17 -29.04 -0.18 0.46 16 9 C 0.17 2.61 7.45 -156.38 -1.17 1.44 16 10 N -0.39 -6.49 12.16 30.90 0.38 -6.11 16 11 O 0.08 1.37 11.31 18.11 0.20 1.57 16 12 C 0.23 4.10 7.77 -13.05 -0.10 4.00 16 13 C -0.04 -0.81 6.30 36.01 0.23 -0.58 16 14 S -0.08 -1.97 21.42 -107.50 -2.30 -4.27 16 15 C -0.53 -13.83 9.50 30.94 0.29 -13.54 16 16 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 17 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 18 N -0.87 -24.50 13.22 55.49 0.73 -23.76 16 19 Si 0.92 20.21 29.55 -169.99 -5.02 15.18 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 N -0.48 -8.21 11.55 -9.87 -0.11 -8.32 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.69 7.43 -51.93 -0.39 0.30 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 1.05 7.44 -51.93 -0.39 0.66 16 32 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 33 H 0.11 1.94 8.14 -51.92 -0.42 1.52 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -30.99 323.67 -6.07 -37.07 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -3.70 Total: -2.35 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.72 Total: -10.57 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.40 Total: -42.92 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.40 Total: 2.98 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.30 Total: -4.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.99 -6.07 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350484414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.744 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds