Wall clock time and date at job start Tue Mar 31 2020 07:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30177 * 126.80212 * 2 1 4 4 O 1.20920 * 111.60298 * 180.02562 * 3 2 1 5 5 C 1.34031 * 111.56920 * 359.75817 * 4 3 2 6 6 C 1.50705 * 126.77660 * 180.28770 * 5 4 3 7 7 C 1.35450 * 106.44966 * 0.38025 * 5 4 3 8 8 C 1.50698 * 128.00950 * 179.90674 * 7 5 4 9 9 C 1.50697 * 109.47544 * 269.68346 * 8 7 5 10 10 N 1.29945 * 126.28567 * 270.02857 * 9 8 7 11 11 O 1.21304 * 110.24811 * 179.68452 * 10 9 8 12 12 C 1.33639 * 109.81079 * 0.46470 * 11 10 9 13 13 C 1.50706 * 126.55140 * 179.80665 * 12 11 10 14 14 S 1.81003 * 109.46853 * 269.68484 * 13 12 11 15 15 C 1.76196 * 99.99846 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00030 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99637 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00513 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99570 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47213 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46950 * 120.00258 * 19 17 15 22 22 H 1.48503 * 109.47177 * 240.00017 * 19 17 15 23 23 N 1.31134 * 106.89898 * 359.53961 * 12 11 10 24 24 H 1.08996 * 109.47007 * 269.97712 * 1 2 3 25 25 H 1.08995 * 109.47381 * 29.98149 * 1 2 3 26 26 H 1.09005 * 109.46844 * 149.97858 * 1 2 3 27 27 H 1.08993 * 109.47395 * 270.11315 * 6 5 4 28 28 H 1.09001 * 109.46754 * 30.11736 * 6 5 4 29 29 H 1.08999 * 109.46982 * 150.11335 * 6 5 4 30 30 H 1.09002 * 109.47107 * 149.68328 * 8 7 5 31 31 H 1.08999 * 109.47023 * 29.68717 * 8 7 5 32 32 H 1.09000 * 109.47318 * 29.68037 * 13 12 11 33 33 H 1.09000 * 109.47161 * 149.68668 * 13 12 11 34 34 H 0.96995 * 120.00407 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 4.9022 -1.3694 0.0114 7 6 2.3540 -1.1320 -0.0004 8 6 1.9592 -2.5864 0.0001 9 6 1.8263 -3.0714 -1.4205 10 7 0.7478 -3.0440 -2.1448 11 8 0.9700 -3.5015 -3.2461 12 6 2.2476 -3.8848 -3.3280 13 6 2.9234 -4.5062 -4.5232 14 16 2.7724 -6.3076 -4.4327 15 6 3.6227 -6.7604 -5.9080 16 1 4.0416 -5.9963 -6.5460 17 6 3.7530 -8.0991 -6.2509 18 7 3.2411 -9.0303 -5.4741 19 14 4.6538 -8.5790 -7.8154 20 1 5.1309 -7.3548 -8.5073 21 1 5.8156 -9.4387 -7.4738 22 1 3.7315 -9.3253 -8.7085 23 7 2.8024 -3.6116 -2.1717 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 5.2202 -1.5549 -1.0145 28 1 5.6636 -0.7849 0.5279 29 1 4.7628 -2.3201 0.5261 30 1 1.0055 -2.7038 0.5147 31 1 2.7233 -3.1701 0.5134 32 1 2.4486 -4.1473 -5.4364 33 1 3.9777 -4.2297 -4.5290 34 1 3.3325 -9.9658 -5.7135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350484414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:15 Heat of formation + Delta-G solvation = 94.136591 kcal Electronic energy + Delta-G solvation = -20456.592636 eV Core-core repulsion = 17100.442125 eV Total energy + Delta-G solvation = -3356.150510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.62098 -46.01224 -37.71235 -36.26265 -34.87326 -34.60292 -34.28558 -30.86677 -29.92792 -29.59271 -28.11681 -27.67510 -24.85661 -23.57522 -22.24547 -21.11043 -19.85218 -19.25219 -18.80705 -18.44040 -17.83663 -16.88287 -16.41575 -15.96084 -15.59240 -15.43524 -15.15881 -14.75965 -14.42005 -14.32981 -14.23793 -13.88011 -13.63873 -13.44478 -13.28317 -13.16784 -13.05879 -12.90000 -12.88323 -12.47104 -12.11927 -11.98470 -11.86054 -11.15979 -11.01122 -10.94562 -10.38031 -10.25148 -8.73774 -8.37834 -6.16618 -0.09546 0.36927 0.91091 1.13300 1.40760 1.44462 1.55750 1.63540 1.82930 2.10613 2.23661 2.61192 2.97092 2.99975 3.13061 3.26707 3.45037 3.69884 3.92183 3.95817 4.17236 4.31634 4.38189 4.51061 4.54475 4.58180 4.63893 4.67757 4.74721 4.80593 4.89636 4.90632 5.10955 5.22106 5.44421 6.20016 7.05781 7.06726 7.19944 8.71696 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031102 B = 0.003128 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.054150 B = 8949.221927 C = 9355.270772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 N -0.397 5.397 4 O 0.083 5.917 5 C -0.002 4.002 6 C -0.076 4.076 7 C -0.221 4.221 8 C 0.058 3.942 9 C 0.177 3.823 10 N -0.397 5.397 11 O 0.065 5.935 12 C 0.220 3.780 13 C -0.019 4.019 14 S -0.144 6.144 15 C -0.537 4.537 16 H 0.090 0.910 17 C 0.019 3.981 18 N -0.909 5.909 19 Si 0.997 3.003 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.276 1.276 23 N -0.482 5.482 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 14.427 10.755 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 N -0.107 5.107 4 O 0.022 5.978 5 C -0.065 4.065 6 C -0.133 4.133 7 C -0.227 4.227 8 C 0.019 3.981 9 C -0.096 4.096 10 N -0.108 5.108 11 O 0.010 5.990 12 C -0.001 4.001 13 C -0.168 4.168 14 S 0.082 5.918 15 C -0.685 4.685 16 H 0.108 0.892 17 C -0.186 4.186 18 N -0.545 5.545 19 Si 0.819 3.181 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.201 1.201 23 N -0.217 5.217 24 H 0.121 0.879 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.959 15.262 12.136 19.523 hybrid contribution 0.754 -0.579 -1.979 2.196 sum -0.205 14.683 10.157 17.855 Atomic orbital electron populations 1.20296 0.84402 1.04107 1.04705 1.23925 1.00121 0.88314 1.00940 1.73832 0.89737 1.24745 1.22385 1.84770 1.21458 1.23323 1.68226 1.24960 0.99448 0.83206 0.98919 1.20589 0.88640 0.99000 1.05040 1.20651 0.92265 0.96370 1.13367 1.18217 1.06379 0.88635 0.84820 1.26130 0.84385 0.98236 1.00896 1.74546 1.24379 1.18981 0.92909 1.85282 1.29641 1.56740 1.27293 1.28035 0.81663 0.94048 0.96329 1.21760 1.02937 0.99506 0.92632 1.85203 1.75534 0.95598 1.35420 1.23128 1.41413 0.95665 1.08282 0.89237 1.26041 0.96073 0.95212 1.01288 1.70134 1.44011 1.01333 1.38998 0.84924 0.77664 0.78660 0.76872 1.18031 1.20054 1.20113 1.71905 1.30413 1.17795 1.01625 0.87880 0.90440 0.89836 0.89152 0.87639 0.87280 0.85930 0.85148 0.86244 0.85863 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.39 71.24 0.74 -0.70 16 2 C 0.03 0.63 7.33 43.58 0.32 0.95 16 3 N -0.40 -10.74 12.07 -49.56 -0.60 -11.34 16 4 O 0.08 2.05 11.20 71.72 0.80 2.86 16 5 C 0.00 -0.03 7.49 25.04 0.19 0.15 16 6 C -0.08 -1.06 10.30 71.24 0.73 -0.33 16 7 C -0.22 -4.92 5.56 -19.74 -0.11 -5.03 16 8 C 0.06 1.20 6.17 29.10 0.18 1.38 16 9 C 0.18 5.16 7.45 138.46 1.03 6.20 16 10 N -0.40 -12.83 12.16 -60.33 -0.73 -13.56 16 11 O 0.07 2.27 11.31 74.87 0.85 3.11 16 12 C 0.22 7.66 7.77 88.38 0.69 8.35 16 13 C -0.02 -0.70 6.30 71.24 0.45 -0.25 16 14 S -0.14 -7.03 21.42 -56.49 -1.21 -8.24 16 15 C -0.54 -28.06 9.50 67.96 0.65 -27.42 16 16 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 17 C 0.02 1.02 5.49 84.86 0.47 1.49 16 18 N -0.91 -51.84 13.22 21.65 0.29 -51.56 16 19 Si 1.00 40.91 29.55 68.60 2.03 42.94 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 23 N -0.48 -15.87 11.55 -303.20 -3.50 -19.38 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 1.26 7.43 -2.39 -0.02 1.24 16 30 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.13 2.13 7.44 -2.39 -0.02 2.11 16 32 H 0.12 3.89 8.14 -2.40 -0.02 3.87 16 33 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -66.49 323.67 4.38 -62.11 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.14 Total: 8.27 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 5.33 Total: -15.22 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -4.55 Total: -95.84 kcal Atomic # 8 Polarization: 4.32 SS G_CDS: 1.65 Total: 5.97 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -1.21 Total: -8.24 kcal Total: -66.49 4.38 -62.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350484414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.246 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds