Wall clock time and date at job start Tue Mar 31 2020 07:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 120.00007 * 2 1 4 4 H 1.48504 * 109.46960 * 269.99911 * 3 2 1 5 5 H 1.48495 * 109.47154 * 30.00074 * 3 2 1 6 6 H 1.48506 * 109.47144 * 150.00250 * 3 2 1 7 7 C 1.38952 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99832 * 198.21093 * 7 2 1 9 9 N 1.37099 * 120.00387 * 18.20329 * 7 2 1 10 10 C 1.34775 * 119.99657 * 44.28911 * 9 7 2 11 11 O 1.21300 * 120.00176 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00016 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47484 * 180.02562 * 12 10 9 14 14 C 1.38264 * 119.95182 * 264.73003 * 13 12 10 15 15 C 1.38127 * 120.07426 * 179.72380 * 14 13 12 16 16 C 1.38761 * 119.96556 * 0.54254 * 15 14 13 17 17 O 1.35899 * 120.04912 * 179.70591 * 16 15 14 18 18 C 1.38695 * 119.90489 * 359.72703 * 16 15 14 19 19 C 1.38280 * 119.92944 * 0.02562 * 18 16 15 20 20 Cl 1.73597 * 119.98860 * 179.97438 * 19 18 16 21 21 C 1.46497 * 120.00247 * 224.28835 * 9 7 2 22 22 C 1.53003 * 117.49888 * 3.22722 * 21 9 7 23 23 C 1.52995 * 117.49931 * 294.60483 * 21 9 7 24 24 H 0.96994 * 119.99554 * 354.93502 * 1 2 3 25 25 H 1.09005 * 109.46933 * 300.00250 * 12 10 9 26 26 H 1.08996 * 109.47399 * 60.00219 * 12 10 9 27 27 H 1.08009 * 119.96156 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.01806 * 180.25417 * 15 14 13 29 29 H 0.96704 * 114.00291 * 270.02201 * 17 16 15 30 30 H 1.07997 * 120.03767 * 180.02562 * 18 16 15 31 31 H 1.09000 * 115.55059 * 148.93523 * 21 9 7 32 32 H 1.09005 * 117.49629 * 359.97438 * 22 21 9 33 33 H 1.08995 * 117.49856 * 145.01526 * 22 21 9 34 34 H 1.09007 * 117.50115 * 214.97573 * 23 21 9 35 35 H 1.08995 * 117.50205 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0483 -1.2270 0.2918 9 7 1.3748 -2.3608 -0.3719 10 6 0.5782 -2.3738 -1.4590 11 8 0.4226 -1.3615 -2.1090 12 6 -0.1183 -3.6461 -1.8677 13 6 -0.9405 -3.3937 -3.1051 14 6 -2.2846 -3.0901 -2.9907 15 6 -3.0393 -2.8526 -4.1230 16 6 -2.4506 -2.9298 -5.3771 17 8 -3.1930 -2.7024 -6.4925 18 6 -1.1036 -3.2399 -5.4908 19 6 -0.3507 -3.4719 -4.3543 20 17 1.3353 -3.8608 -4.4949 21 6 1.5632 -3.5835 0.4127 22 6 2.4184 -3.4864 1.6777 23 6 2.9641 -4.1979 0.4381 24 1 -0.4849 0.8368 0.0742 25 1 0.6246 -4.4161 -2.0763 26 1 -0.7698 -3.9793 -1.0599 27 1 -2.7439 -3.0346 -2.0148 28 1 -4.0881 -2.6115 -4.0324 29 1 -3.6091 -3.4957 -6.8566 30 1 -0.6431 -3.3002 -6.4658 31 1 0.7138 -4.2664 0.4303 32 1 2.8412 -2.5128 1.9258 33 1 2.1316 -4.1052 2.5279 34 1 3.0365 -5.2850 0.4727 35 1 3.7456 -3.6926 -0.1294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357343296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:48 Heat of formation + Delta-G solvation = -17.978377 kcal Electronic energy + Delta-G solvation = -21565.115656 eV Core-core repulsion = 18169.767018 eV Total energy + Delta-G solvation = -3395.348638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.74766 -38.48550 -37.04825 -36.04079 -35.69603 -32.84686 -31.61915 -30.70595 -30.55297 -26.95173 -24.53370 -22.68421 -21.85643 -21.58877 -21.04091 -19.17717 -18.40517 -16.44827 -16.06345 -15.99568 -15.71269 -15.23120 -14.64698 -14.27171 -14.07813 -13.70086 -13.42445 -13.36141 -13.01088 -12.47188 -12.29469 -11.79817 -11.47970 -11.28417 -11.09992 -10.95265 -10.88327 -10.81654 -10.52819 -10.50508 -10.39645 -10.13909 -9.94074 -9.71936 -8.71510 -8.62166 -8.28068 -7.89910 -6.98182 -6.07810 -3.82451 1.32967 1.42695 2.44483 3.33019 3.39843 3.44211 3.69266 4.16697 4.25472 4.32417 4.78595 4.88832 5.00961 5.15754 5.20860 5.33045 5.56454 5.60010 5.72065 5.72964 5.78780 5.95344 6.02128 6.13293 6.17190 6.24222 6.31496 6.46140 6.51082 6.72498 6.76616 6.85347 6.95287 7.65580 7.66538 8.31297 9.10448 9.20794 9.70667 10.34385 11.01428 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.005821 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.533967 B = 4809.133548 C = 5557.147877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.346 4.346 8 H 0.076 0.924 9 N -0.429 5.429 10 C 0.493 3.507 11 O -0.521 6.521 12 C -0.107 4.107 13 C -0.037 4.037 14 C -0.079 4.079 15 C -0.139 4.139 16 C 0.101 3.899 17 O -0.496 6.496 18 C -0.139 4.139 19 C -0.005 4.005 20 Cl -0.063 7.063 21 C 0.075 3.925 22 C -0.173 4.173 23 C -0.208 4.208 24 H 0.263 0.737 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.385 0.615 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 -11.546 -5.470 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.473 4.473 8 H 0.094 0.906 9 N -0.151 5.151 10 C 0.280 3.720 11 O -0.398 6.398 12 C -0.147 4.147 13 C -0.039 4.039 14 C -0.097 4.097 15 C -0.158 4.158 16 C 0.056 3.944 17 O -0.305 6.305 18 C -0.159 4.159 19 C -0.032 4.032 20 Cl -0.034 7.034 21 C -0.032 4.032 22 C -0.211 4.211 23 C -0.247 4.247 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.240 0.760 30 H 0.152 0.848 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.848 -10.310 -5.813 12.446 hybrid contribution 0.352 0.327 0.049 0.483 sum -3.496 -9.983 -5.764 12.046 Atomic orbital electron populations 1.69811 1.06482 1.27280 1.43155 1.25205 0.94811 0.99248 0.94292 0.86248 0.79298 0.82364 0.78321 1.20362 1.21355 1.19940 1.18811 0.94397 0.83828 1.50256 0.90637 1.42715 1.44360 1.06736 1.21273 1.19415 0.82922 0.88168 0.81503 1.90566 1.62062 1.34212 1.52920 1.20819 0.99064 1.00086 0.94760 1.19405 0.93849 0.97574 0.93043 1.20864 0.92681 0.97445 0.98719 1.21387 1.00788 1.01835 0.91771 1.18154 0.89525 1.00626 0.86050 1.84864 1.67207 1.36661 1.41773 1.21130 0.93877 1.02692 0.98155 1.20501 0.85460 1.03298 0.93973 1.98356 1.14758 1.92142 1.98156 1.21694 0.92499 0.91641 0.97336 1.23053 1.04544 1.02467 0.91043 1.23307 0.99870 0.98435 1.03080 0.92697 0.89144 0.89505 0.84764 0.85195 0.75962 0.84849 0.88122 0.87511 0.89866 0.89855 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.62 11.74 55.50 0.65 -23.97 16 2 C 0.07 2.11 4.39 -17.47 -0.08 2.04 16 3 Si 0.91 22.28 29.59 -169.99 -5.03 17.25 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.35 -9.44 7.92 -14.93 -0.12 -9.56 16 8 H 0.08 2.01 7.26 -52.48 -0.38 1.63 16 9 N -0.43 -10.63 2.83 -107.73 -0.31 -10.93 16 10 C 0.49 12.26 6.96 -10.99 -0.08 12.18 16 11 O -0.52 -15.22 13.80 5.54 0.08 -15.14 16 12 C -0.11 -2.04 3.96 -29.04 -0.11 -2.15 16 13 C -0.04 -0.69 4.38 -104.56 -0.46 -1.15 16 14 C -0.08 -1.31 9.67 -39.61 -0.38 -1.69 16 15 C -0.14 -2.07 9.99 -39.43 -0.39 -2.46 16 16 C 0.10 1.49 6.70 -39.22 -0.26 1.23 16 17 O -0.50 -6.16 13.50 -19.42 -0.26 -6.42 16 18 C -0.14 -2.18 9.77 -39.40 -0.38 -2.57 16 19 C -0.01 -0.10 6.31 -39.52 -0.25 -0.35 16 20 Cl -0.06 -1.09 27.39 -51.86 -1.42 -2.51 16 21 C 0.07 1.47 5.87 -67.93 -0.40 1.07 16 22 C -0.17 -3.09 9.80 -26.73 -0.26 -3.36 16 23 C -0.21 -3.53 10.36 -26.73 -0.28 -3.81 16 24 H 0.26 7.50 8.32 -40.82 -0.34 7.16 16 25 H 0.09 1.57 7.08 -51.93 -0.37 1.20 16 26 H 0.09 1.48 7.47 -51.93 -0.39 1.09 16 27 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 28 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.39 2.58 9.06 45.56 0.41 3.00 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.10 1.74 6.96 -51.93 -0.36 1.38 16 32 H 0.11 2.13 6.72 -51.93 -0.35 1.78 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -34.28 317.72 -8.06 -42.34 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.11 Total: 5.16 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.46 Total: -10.57 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.35 Total: -34.90 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.19 Total: -21.56 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.42 Total: -2.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.28 -8.06 -42.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357343296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.363 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds