Wall clock time and date at job start Tue Mar 31 2020 07:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 120.00007 * 2 1 4 4 H 1.48504 * 109.46960 * 269.99911 * 3 2 1 5 5 H 1.48495 * 109.47154 * 30.00074 * 3 2 1 6 6 H 1.48506 * 109.47144 * 150.00250 * 3 2 1 7 7 C 1.38952 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99832 * 198.21093 * 7 2 1 9 9 N 1.37099 * 120.00387 * 18.20329 * 7 2 1 10 10 C 1.34775 * 119.99657 * 44.28911 * 9 7 2 11 11 O 1.21300 * 120.00176 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00016 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47484 * 180.02562 * 12 10 9 14 14 C 1.38264 * 119.95182 * 264.73003 * 13 12 10 15 15 C 1.38127 * 120.07426 * 179.72380 * 14 13 12 16 16 C 1.38761 * 119.96556 * 0.54254 * 15 14 13 17 17 O 1.35899 * 120.04912 * 179.70591 * 16 15 14 18 18 C 1.38695 * 119.90489 * 359.72703 * 16 15 14 19 19 C 1.38280 * 119.92944 * 0.02562 * 18 16 15 20 20 Cl 1.73597 * 119.98860 * 179.97438 * 19 18 16 21 21 C 1.46497 * 120.00247 * 224.28835 * 9 7 2 22 22 C 1.53003 * 117.49888 * 3.22722 * 21 9 7 23 23 C 1.52995 * 117.49931 * 294.60483 * 21 9 7 24 24 H 0.96994 * 119.99554 * 354.93502 * 1 2 3 25 25 H 1.09005 * 109.46933 * 300.00250 * 12 10 9 26 26 H 1.08996 * 109.47399 * 60.00219 * 12 10 9 27 27 H 1.08009 * 119.96156 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.01806 * 180.25417 * 15 14 13 29 29 H 0.96704 * 114.00291 * 270.02201 * 17 16 15 30 30 H 1.07997 * 120.03767 * 180.02562 * 18 16 15 31 31 H 1.09000 * 115.55059 * 148.93523 * 21 9 7 32 32 H 1.09005 * 117.49629 * 359.97438 * 22 21 9 33 33 H 1.08995 * 117.49856 * 145.01526 * 22 21 9 34 34 H 1.09007 * 117.50115 * 214.97573 * 23 21 9 35 35 H 1.08995 * 117.50205 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0483 -1.2270 0.2918 9 7 1.3748 -2.3608 -0.3719 10 6 0.5782 -2.3738 -1.4590 11 8 0.4226 -1.3615 -2.1090 12 6 -0.1183 -3.6461 -1.8677 13 6 -0.9405 -3.3937 -3.1051 14 6 -2.2846 -3.0901 -2.9907 15 6 -3.0393 -2.8526 -4.1230 16 6 -2.4506 -2.9298 -5.3771 17 8 -3.1930 -2.7024 -6.4925 18 6 -1.1036 -3.2399 -5.4908 19 6 -0.3507 -3.4719 -4.3543 20 17 1.3353 -3.8608 -4.4949 21 6 1.5632 -3.5835 0.4127 22 6 2.4184 -3.4864 1.6777 23 6 2.9641 -4.1979 0.4381 24 1 -0.4849 0.8368 0.0742 25 1 0.6246 -4.4161 -2.0763 26 1 -0.7698 -3.9793 -1.0599 27 1 -2.7439 -3.0346 -2.0148 28 1 -4.0881 -2.6115 -4.0324 29 1 -3.6091 -3.4957 -6.8566 30 1 -0.6431 -3.3002 -6.4658 31 1 0.7138 -4.2664 0.4303 32 1 2.8412 -2.5128 1.9258 33 1 2.1316 -4.1052 2.5279 34 1 3.0365 -5.2850 0.4727 35 1 3.7456 -3.6926 -0.1294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357343296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:48 Heat of formation + Delta-G solvation = -40.502379 kcal Electronic energy + Delta-G solvation = -21566.092370 eV Core-core repulsion = 18169.767018 eV Total energy + Delta-G solvation = -3396.325352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03822 -40.11214 -38.27431 -37.59069 -37.03796 -34.77055 -33.18719 -32.43895 -31.79196 -28.49462 -26.36565 -23.90550 -23.30269 -22.94882 -22.59151 -20.95736 -19.48987 -18.27064 -17.77659 -17.26899 -17.01559 -16.68456 -16.34568 -15.81161 -15.59273 -15.17240 -15.00442 -14.64879 -14.55536 -13.92284 -13.71653 -13.49969 -13.04179 -12.92771 -12.77305 -12.67660 -12.36746 -12.26055 -12.16220 -12.03688 -11.81941 -11.60986 -11.57976 -11.18115 -10.70587 -9.99035 -9.82636 -9.41727 -8.90746 -8.16872 -5.93224 0.10343 0.20745 1.15149 1.34497 1.43500 1.46993 2.27884 2.46505 2.49862 3.14283 3.17803 3.26776 3.40587 3.77821 3.83521 4.06439 4.15571 4.21534 4.31827 4.34010 4.46532 4.56366 4.66593 4.75941 4.87067 4.92426 5.05375 5.12614 5.28808 5.32409 5.44903 5.49648 5.53367 5.69814 6.24570 6.83891 7.08738 7.26988 7.76760 8.44244 8.91501 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.005821 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.533967 B = 4809.133548 C = 5557.147877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.296 1.296 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.351 4.351 8 H 0.073 0.927 9 N -0.447 5.447 10 C 0.483 3.517 11 O -0.575 6.575 12 C -0.091 4.091 13 C -0.066 4.066 14 C -0.088 4.088 15 C -0.140 4.140 16 C 0.113 3.887 17 O -0.499 6.499 18 C -0.147 4.147 19 C -0.020 4.020 20 Cl -0.070 7.070 21 C 0.044 3.956 22 C -0.170 4.170 23 C -0.183 4.183 24 H 0.257 0.743 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.156 0.844 29 H 0.413 0.587 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 -13.142 -5.586 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.180 4.180 3 Si 0.787 3.213 4 H -0.223 1.223 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.479 4.479 8 H 0.090 0.910 9 N -0.168 5.168 10 C 0.272 3.728 11 O -0.456 6.456 12 C -0.131 4.131 13 C -0.067 4.067 14 C -0.107 4.107 15 C -0.158 4.158 16 C 0.068 3.932 17 O -0.313 6.313 18 C -0.167 4.167 19 C -0.047 4.047 20 Cl -0.041 7.041 21 C -0.061 4.061 22 C -0.207 4.207 23 C -0.222 4.222 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.158 0.842 28 H 0.174 0.826 29 H 0.273 0.727 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.260 -11.961 -5.903 14.002 hybrid contribution 0.477 0.747 0.004 0.887 sum -3.782 -11.214 -5.899 13.223 Atomic orbital electron populations 1.69910 1.07662 1.27287 1.45400 1.25921 0.95492 1.02096 0.94524 0.85445 0.79224 0.79317 0.77282 1.22272 1.20605 1.17923 1.18995 0.94484 0.85269 1.49137 0.90969 1.42960 1.44108 1.07645 1.22090 1.20298 0.82386 0.89357 0.80763 1.90518 1.63862 1.36625 1.54559 1.20646 0.99361 0.97254 0.95886 1.19481 0.94639 0.99691 0.92924 1.21049 0.92400 0.97421 0.99792 1.21668 1.01942 1.00946 0.91248 1.18198 0.89375 0.98822 0.86784 1.84798 1.66970 1.38659 1.40858 1.21360 0.94404 1.02597 0.98294 1.20678 0.85373 1.04078 0.94527 1.98342 1.15332 1.92232 1.98158 1.22041 0.94963 0.90603 0.98457 1.23094 1.03615 1.02013 0.91991 1.23308 0.97015 1.00421 1.01408 0.93351 0.87669 0.87633 0.84182 0.82608 0.72699 0.83327 0.85450 0.90255 0.86413 0.85787 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.58 11.74 21.66 0.25 -52.32 16 2 C 0.03 1.49 4.39 84.93 0.37 1.87 16 3 Si 0.96 46.70 29.59 68.60 2.03 48.73 16 4 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.35 -19.47 7.92 84.04 0.67 -18.80 16 8 H 0.07 3.93 7.26 -2.91 -0.02 3.90 16 9 N -0.45 -22.21 2.83 -613.13 -1.74 -23.95 16 10 C 0.48 24.24 6.96 87.66 0.61 24.85 16 11 O -0.58 -34.49 13.80 -3.09 -0.04 -34.53 16 12 C -0.09 -3.43 3.96 29.10 0.12 -3.32 16 13 C -0.07 -2.40 4.38 -19.83 -0.09 -2.48 16 14 C -0.09 -2.86 9.67 22.25 0.22 -2.65 16 15 C -0.14 -3.88 9.99 22.37 0.22 -3.66 16 16 C 0.11 3.11 6.70 22.50 0.15 3.26 16 17 O -0.50 -10.93 13.50 -92.41 -1.25 -12.18 16 18 C -0.15 -4.43 9.77 22.39 0.22 -4.22 16 19 C -0.02 -0.69 6.31 22.31 0.14 -0.55 16 20 Cl -0.07 -2.38 27.39 -2.72 -0.07 -2.45 16 21 C 0.04 1.68 5.87 44.99 0.26 1.94 16 22 C -0.17 -5.72 9.80 30.60 0.30 -5.42 16 23 C -0.18 -5.76 10.36 30.59 0.32 -5.44 16 24 H 0.26 15.15 8.32 -92.71 -0.77 14.38 16 25 H 0.11 3.54 7.08 -2.38 -0.02 3.53 16 26 H 0.11 3.47 7.47 -2.39 -0.02 3.45 16 27 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 28 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.41 4.10 9.06 -74.05 -0.67 3.43 16 30 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.13 4.07 6.96 -2.39 -0.02 4.06 16 32 H 0.08 3.13 6.72 -2.38 -0.02 3.12 16 33 H 0.12 3.13 8.14 -2.39 -0.02 3.12 16 34 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -76.20 317.72 3.15 -73.05 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.46 Total: 18.28 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 3.51 Total: -14.62 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.48 Total: -76.27 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -1.29 Total: -46.71 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.07 Total: -2.45 kcal Total: -76.20 3.15 -73.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357343296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.543 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds