Wall clock time and date at job start Tue Mar 31 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48498 * 109.47311 * 270.00682 * 3 2 1 5 5 H 1.48505 * 109.46655 * 30.00074 * 3 2 1 6 6 H 1.48497 * 109.47553 * 150.00140 * 3 2 1 7 7 C 1.37878 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00411 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46954 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00283 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99967 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99919 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.83226 * 328.70215 * 14 13 11 16 16 C 1.54706 * 110.94115 * 92.45882 * 14 13 11 17 17 O 1.43782 * 102.78022 * 92.87792 * 16 14 13 18 18 C 1.36139 * 109.23703 * 27.75387 * 17 16 14 19 19 C 1.39298 * 129.88266 * 161.57507 * 18 17 16 20 20 C 1.37930 * 120.27000 * 179.07173 * 19 18 17 21 21 C 1.38265 * 120.36771 * 359.97438 * 20 19 18 22 22 C 1.38474 * 119.75166 * 0.13939 * 21 20 19 23 23 Cl 1.73599 * 120.02595 * 179.97438 * 22 21 20 24 24 C 1.37862 * 119.94972 * 0.02562 * 22 21 20 25 25 H 0.96996 * 120.00225 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46870 * 59.99645 * 9 7 2 27 27 H 1.09004 * 109.47014 * 300.00014 * 9 7 2 28 28 H 1.09006 * 109.46813 * 60.00352 * 10 9 7 29 29 H 1.08991 * 109.47235 * 299.99862 * 10 9 7 30 30 H 0.97003 * 120.00145 * 0.02562 * 13 11 10 31 31 H 1.09002 * 110.75096 * 211.19556 * 16 14 13 32 32 H 1.08990 * 110.75299 * 334.55585 * 16 14 13 33 33 H 1.08003 * 119.86035 * 359.08874 * 19 18 17 34 34 H 1.08006 * 119.81906 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.12708 * 179.86828 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5286 -2.6363 -0.0022 12 8 6.1350 -1.5860 -0.0026 13 7 6.2026 -3.8035 -0.0028 14 6 7.6676 -3.8034 -0.0035 15 1 8.0550 -2.9327 -0.5326 16 6 8.2211 -3.8658 1.4398 17 8 8.4008 -5.2766 1.6509 18 6 8.6299 -5.8836 0.4541 19 6 9.1870 -7.1299 0.1768 20 6 9.3107 -7.5615 -1.1274 21 6 8.8830 -6.7626 -2.1717 22 6 8.3302 -5.5212 -1.9054 23 17 7.7915 -4.5120 -3.2111 24 6 8.2090 -5.0870 -0.6026 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6799 -0.8912 28 1 3.6580 -3.1504 -0.8908 29 1 3.6587 -3.1500 0.8892 30 1 5.7176 -4.6436 -0.0029 31 1 9.1735 -3.3404 1.5112 32 1 7.4999 -3.4582 2.1480 33 1 9.5231 -7.7608 0.9864 34 1 9.7433 -8.5293 -1.3340 35 1 8.9837 -7.1035 -3.1915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360623401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:39 Heat of formation + Delta-G solvation = -53.321901 kcal Electronic energy + Delta-G solvation = -20759.598728 eV Core-core repulsion = 17362.717480 eV Total energy + Delta-G solvation = -3396.881248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68438 -39.14902 -38.02921 -36.57325 -34.77263 -33.50206 -31.75107 -31.04539 -30.38704 -29.01131 -26.11279 -23.84687 -22.78844 -22.14417 -21.06236 -19.81354 -17.99017 -17.48340 -16.95986 -16.84293 -16.15915 -15.77588 -15.38598 -14.95478 -14.82924 -14.12641 -14.07519 -13.75997 -13.38530 -13.07091 -12.86864 -12.57633 -12.39670 -12.11277 -11.98387 -11.59465 -11.43278 -11.18676 -11.14705 -10.97296 -10.19100 -10.07139 -9.81817 -9.54723 -9.20337 -9.15454 -9.02036 -8.62238 -8.51366 -6.03452 -4.02357 0.64235 0.81883 1.81965 2.83031 3.00238 3.02261 3.37381 3.43883 3.48368 3.54239 3.97586 4.23066 4.50110 4.50224 4.65122 4.88270 4.90151 4.94572 5.14238 5.24187 5.31926 5.42008 5.58027 5.72913 5.78322 5.88352 6.02562 6.05128 6.07034 6.42250 6.65984 6.69180 7.34246 7.41377 7.64567 7.77842 8.46629 8.56138 8.99534 9.59379 11.09390 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024492 B = 0.003592 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.939060 B = 7792.956533 C = 8249.126040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.121 4.121 11 C 0.515 3.485 12 O -0.537 6.537 13 N -0.727 5.727 14 C 0.163 3.837 15 H 0.118 0.882 16 C 0.039 3.961 17 O -0.296 6.296 18 C 0.135 3.865 19 C -0.141 4.141 20 C -0.063 4.063 21 C -0.148 4.148 22 C 0.031 3.969 23 Cl -0.054 7.054 24 C -0.190 4.190 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.402 0.598 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.650 -16.827 -1.853 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.304 3.696 12 O -0.412 6.412 13 N -0.381 5.381 14 C 0.057 3.943 15 H 0.136 0.864 16 C -0.037 4.037 17 O -0.209 6.209 18 C 0.088 3.912 19 C -0.160 4.160 20 C -0.082 4.082 21 C -0.166 4.166 22 C 0.004 3.996 23 Cl -0.025 7.025 24 C -0.192 4.192 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.237 0.763 31 H 0.109 0.891 32 H 0.135 0.865 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.841 -15.884 -1.734 27.062 hybrid contribution 0.040 0.657 -0.260 0.708 sum 21.881 -15.226 -1.994 26.732 Atomic orbital electron populations 1.69908 1.06297 1.26981 1.51014 1.24972 0.94708 0.99224 0.94328 0.86796 0.80597 0.83407 0.78745 1.20247 1.21433 1.18545 1.21104 0.89241 0.94582 1.51387 0.90923 1.19372 0.96467 0.90065 0.97671 1.21686 0.87472 1.03426 1.03541 1.21653 0.91682 0.82519 0.73760 1.90657 1.70687 1.31297 1.48565 1.46194 1.04614 1.09826 1.77434 1.20806 0.82831 0.96186 0.94480 0.86420 1.24427 1.02477 0.79038 0.97728 1.86903 1.85974 1.21574 1.26424 1.19502 0.93598 0.93612 0.84457 1.20377 1.03180 0.94744 0.97714 1.20880 0.97030 0.99390 0.90867 1.21007 1.02269 0.92694 1.00677 1.20213 0.99015 0.92763 0.87627 1.98423 1.88283 1.68202 1.47613 1.20587 1.06640 0.99348 0.92618 0.92703 0.95803 0.96253 0.89456 0.89416 0.76298 0.89115 0.86471 0.84616 0.84013 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.33 5.64 -27.89 -0.16 -2.49 16 11 C 0.51 9.09 7.83 -10.98 -0.09 9.00 16 12 O -0.54 -11.35 15.62 5.56 0.09 -11.27 16 13 N -0.73 -9.83 5.15 -53.60 -0.28 -10.10 16 14 C 0.16 2.00 3.32 -67.72 -0.22 1.78 16 15 H 0.12 1.61 7.54 -51.93 -0.39 1.22 16 16 C 0.04 0.43 7.73 38.05 0.29 0.72 16 17 O -0.30 -3.34 11.10 -20.18 -0.22 -3.57 16 18 C 0.14 1.41 7.04 -38.96 -0.27 1.13 16 19 C -0.14 -1.14 10.06 -39.30 -0.40 -1.53 16 20 C -0.06 -0.42 10.01 -39.68 -0.40 -0.82 16 21 C -0.15 -1.18 9.85 -39.48 -0.39 -1.57 16 22 C 0.03 0.32 6.31 -39.63 -0.25 0.07 16 23 Cl -0.05 -0.63 28.81 -51.86 -1.49 -2.12 16 24 C -0.19 -2.09 5.69 -104.06 -0.59 -2.69 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 27 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.40 4.70 8.65 -40.82 -0.35 4.35 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.12 1.30 8.09 -51.93 -0.42 0.88 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -33.69 318.67 -8.05 -41.74 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.05 Total: -0.29 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.99 Total: -9.83 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.50 Total: -37.38 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.14 Total: -14.83 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.49 Total: -2.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.69 -8.05 -41.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360623401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.583 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds