Wall clock time and date at job start Tue Mar 31 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48498 * 109.47311 * 270.00682 * 3 2 1 5 5 H 1.48505 * 109.46655 * 30.00074 * 3 2 1 6 6 H 1.48497 * 109.47553 * 150.00140 * 3 2 1 7 7 C 1.37878 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00411 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46954 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00283 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99967 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99919 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.83226 * 328.70215 * 14 13 11 16 16 C 1.54706 * 110.94115 * 92.45882 * 14 13 11 17 17 O 1.43782 * 102.78022 * 92.87792 * 16 14 13 18 18 C 1.36139 * 109.23703 * 27.75387 * 17 16 14 19 19 C 1.39298 * 129.88266 * 161.57507 * 18 17 16 20 20 C 1.37930 * 120.27000 * 179.07173 * 19 18 17 21 21 C 1.38265 * 120.36771 * 359.97438 * 20 19 18 22 22 C 1.38474 * 119.75166 * 0.13939 * 21 20 19 23 23 Cl 1.73599 * 120.02595 * 179.97438 * 22 21 20 24 24 C 1.37862 * 119.94972 * 0.02562 * 22 21 20 25 25 H 0.96996 * 120.00225 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46870 * 59.99645 * 9 7 2 27 27 H 1.09004 * 109.47014 * 300.00014 * 9 7 2 28 28 H 1.09006 * 109.46813 * 60.00352 * 10 9 7 29 29 H 1.08991 * 109.47235 * 299.99862 * 10 9 7 30 30 H 0.97003 * 120.00145 * 0.02562 * 13 11 10 31 31 H 1.09002 * 110.75096 * 211.19556 * 16 14 13 32 32 H 1.08990 * 110.75299 * 334.55585 * 16 14 13 33 33 H 1.08003 * 119.86035 * 359.08874 * 19 18 17 34 34 H 1.08006 * 119.81906 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.12708 * 179.86828 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5286 -2.6363 -0.0022 12 8 6.1350 -1.5860 -0.0026 13 7 6.2026 -3.8035 -0.0028 14 6 7.6676 -3.8034 -0.0035 15 1 8.0550 -2.9327 -0.5326 16 6 8.2211 -3.8658 1.4398 17 8 8.4008 -5.2766 1.6509 18 6 8.6299 -5.8836 0.4541 19 6 9.1870 -7.1299 0.1768 20 6 9.3107 -7.5615 -1.1274 21 6 8.8830 -6.7626 -2.1717 22 6 8.3302 -5.5212 -1.9054 23 17 7.7915 -4.5120 -3.2111 24 6 8.2090 -5.0870 -0.6026 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6799 -0.8912 28 1 3.6580 -3.1504 -0.8908 29 1 3.6587 -3.1500 0.8892 30 1 5.7176 -4.6436 -0.0029 31 1 9.1735 -3.3404 1.5112 32 1 7.4999 -3.4582 2.1480 33 1 9.5231 -7.7608 0.9864 34 1 9.7433 -8.5293 -1.3340 35 1 8.9837 -7.1035 -3.1915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360623401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:38 Heat of formation + Delta-G solvation = -75.932989 kcal Electronic energy + Delta-G solvation = -20760.579218 eV Core-core repulsion = 17362.717480 eV Total energy + Delta-G solvation = -3397.861738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.51197 -40.50867 -38.76854 -37.35788 -35.97078 -35.51324 -33.44397 -32.27202 -31.08225 -29.95239 -27.93253 -24.77185 -23.64006 -23.28354 -22.39022 -21.31238 -19.29746 -18.77093 -18.12382 -17.73547 -17.44669 -16.64222 -16.54422 -16.32565 -16.17956 -15.61902 -14.92149 -14.82302 -14.64205 -14.59650 -14.31121 -13.86927 -13.42538 -13.24881 -13.08241 -12.89268 -12.85211 -12.31473 -12.11973 -11.99765 -11.98418 -11.90222 -11.77877 -11.41621 -10.96057 -10.79075 -10.29713 -9.91204 -9.35548 -8.32158 -6.35319 -0.05463 0.13970 1.04938 1.33028 1.34748 1.49571 1.57842 2.05600 2.10698 2.34324 2.59959 3.03537 3.15053 3.36192 3.74382 3.92759 4.08171 4.11615 4.24665 4.32094 4.37779 4.38060 4.45972 4.57173 4.63749 4.96463 5.08963 5.13309 5.23238 5.28374 5.36257 5.42244 5.42946 5.59906 5.96103 6.22250 6.43625 6.71014 7.17776 7.30005 8.83607 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024492 B = 0.003592 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.939060 B = 7792.956533 C = 8249.126040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.006 3.994 10 C -0.117 4.117 11 C 0.523 3.477 12 O -0.576 6.576 13 N -0.708 5.708 14 C 0.159 3.841 15 H 0.100 0.900 16 C 0.044 3.956 17 O -0.304 6.304 18 C 0.119 3.881 19 C -0.137 4.137 20 C -0.048 4.048 21 C -0.144 4.144 22 C 0.016 3.984 23 Cl -0.074 7.074 24 C -0.204 4.204 25 H 0.267 0.733 26 H 0.013 0.987 27 H 0.009 0.991 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.413 0.587 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.827 -18.698 -1.886 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.032 4.032 10 C -0.156 4.156 11 C 0.312 3.688 12 O -0.454 6.454 13 N -0.361 5.361 14 C 0.054 3.946 15 H 0.118 0.882 16 C -0.032 4.032 17 O -0.218 6.218 18 C 0.072 3.928 19 C -0.156 4.156 20 C -0.066 4.066 21 C -0.162 4.162 22 C -0.012 4.012 23 Cl -0.045 7.045 24 C -0.206 4.206 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.027 0.973 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.250 0.750 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.176 0.824 34 H 0.199 0.801 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 24.034 -17.811 -1.767 29.967 hybrid contribution -0.603 1.051 -0.271 1.242 sum 23.431 -16.760 -2.039 28.880 Atomic orbital electron populations 1.70022 1.07821 1.28122 1.52475 1.25815 0.95504 1.02902 0.94239 0.85817 0.79312 0.79408 0.79112 1.19488 1.20334 1.18329 1.21424 0.91274 0.93689 1.50390 0.93299 1.19216 0.93908 0.93522 0.96508 1.21503 0.88979 1.00137 1.05016 1.21187 0.90942 0.83022 0.73672 1.90644 1.71138 1.32833 1.50831 1.45936 1.05587 1.08950 1.75579 1.20861 0.81422 0.96608 0.95723 0.88167 1.24375 1.03101 0.79437 0.96310 1.86879 1.86397 1.21475 1.27049 1.19774 0.94728 0.94547 0.83727 1.20787 1.01876 0.93808 0.99112 1.21349 0.95243 1.00361 0.89668 1.21356 1.00980 0.91632 1.02278 1.20434 1.00280 0.93603 0.86843 1.98415 1.88647 1.69038 1.48422 1.20464 1.08007 0.98887 0.93246 0.92365 0.96832 0.97304 0.88241 0.87816 0.75041 0.87443 0.86991 0.82418 0.80064 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 46.91 27.47 68.60 1.88 48.79 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.26 -12.77 6.54 99.48 0.65 -12.12 16 7 C -0.53 -30.76 9.66 25.60 0.25 -30.51 16 8 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 9 C 0.01 0.32 3.33 29.85 0.10 0.42 16 10 C -0.12 -4.44 5.64 29.85 0.17 -4.27 16 11 C 0.52 18.36 7.83 87.66 0.69 19.04 16 12 O -0.58 -24.54 15.62 -3.02 -0.05 -24.59 16 13 N -0.71 -18.73 5.15 -441.88 -2.28 -21.01 16 14 C 0.16 3.85 3.32 45.13 0.15 4.00 16 15 H 0.10 2.80 7.54 -2.39 -0.02 2.78 16 16 C 0.04 0.91 7.73 72.56 0.56 1.47 16 17 O -0.30 -6.43 11.10 -95.13 -1.06 -7.48 16 18 C 0.12 2.23 7.04 22.67 0.16 2.38 16 19 C -0.14 -1.72 10.06 22.45 0.23 -1.50 16 20 C -0.05 -0.44 10.01 22.20 0.22 -0.21 16 21 C -0.14 -1.86 9.85 22.33 0.22 -1.64 16 22 C 0.02 0.30 6.31 22.24 0.14 0.44 16 23 Cl -0.07 -1.67 28.81 -2.72 -0.08 -1.75 16 24 C -0.20 -4.25 5.69 -19.50 -0.11 -4.36 16 25 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 26 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 27 H 0.01 0.44 7.53 -2.38 -0.02 0.43 16 28 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 29 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.41 9.21 8.65 -92.71 -0.80 8.41 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 2.44 8.09 -2.39 -0.02 2.42 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 35 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -73.60 318.67 2.23 -71.37 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.27 Total: 7.31 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 3.23 Total: -13.47 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -1.98 Total: -80.18 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.10 Total: -32.07 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.88 Total: 48.79 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -73.60 2.23 -71.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360623401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.563 kcal (2) G-P(sol) polarization free energy of solvation -73.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds