Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48493 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46867 * 299.99773 * 3 2 1 6 6 H 1.48496 * 109.47241 * 59.99523 * 3 2 1 7 7 C 1.37871 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47004 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47204 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99878 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00337 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00346 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.83232 * 31.27843 * 14 13 11 16 16 C 1.54717 * 110.97452 * 267.53995 * 14 13 11 17 17 O 1.43768 * 102.78736 * 216.48374 * 16 14 13 18 18 C 1.36132 * 109.28515 * 27.57364 * 17 16 14 19 19 C 1.39294 * 129.87040 * 161.64218 * 18 17 16 20 20 C 1.37940 * 120.26826 * 179.61584 * 19 18 17 21 21 C 1.38259 * 120.36813 * 359.82274 * 20 19 18 22 22 C 1.38471 * 119.75176 * 0.21876 * 21 20 19 23 23 Cl 1.73601 * 120.03009 * 180.02562 * 22 21 20 24 24 C 1.37858 * 119.94989 * 359.97438 * 22 21 20 25 25 H 0.96996 * 119.99614 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47187 * 60.00019 * 9 7 2 27 27 H 1.08996 * 109.47126 * 300.00026 * 9 7 2 28 28 H 1.09007 * 109.47293 * 60.00222 * 10 9 7 29 29 H 1.08997 * 109.47391 * 300.00546 * 10 9 7 30 30 H 0.97002 * 119.99825 * 0.02562 * 13 11 10 31 31 H 1.09001 * 110.74694 * 334.80754 * 16 14 13 32 32 H 1.08992 * 110.74958 * 97.97454 * 16 14 13 33 33 H 1.07996 * 119.87049 * 359.42223 * 19 18 17 34 34 H 1.08000 * 119.81544 * 179.89034 * 20 19 18 35 35 H 1.08005 * 120.12710 * 180.22818 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1344 0.0008 14 6 1.4331 -7.4031 0.0008 15 1 0.4851 -7.3034 -0.5278 16 6 1.2104 -7.9139 1.4441 17 8 1.3445 -9.3383 1.3018 18 6 2.1622 -9.6098 0.2479 19 6 2.8522 -10.7775 -0.0693 20 6 3.6299 -10.8384 -1.2070 21 6 3.7294 -9.7432 -2.0450 22 6 3.0477 -8.5780 -1.7370 23 17 3.1670 -7.1988 -2.7845 24 6 2.2732 -8.5143 -0.5983 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 3.1356 -6.1344 0.0004 31 1 1.9732 -7.5194 2.1154 32 1 0.2136 -7.6505 1.7975 33 1 2.7805 -11.6378 0.5797 34 1 4.1631 -11.7469 -1.4450 35 1 4.3365 -9.7964 -2.9367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360623402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -55.980627 kcal Electronic energy + Delta-G solvation = -20721.270642 eV Core-core repulsion = 17324.274103 eV Total energy + Delta-G solvation = -3396.996539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.60227 -39.04662 -37.98873 -36.50964 -34.78635 -33.47282 -31.60496 -30.76626 -30.33844 -28.85811 -25.72803 -23.82131 -22.79270 -22.27650 -21.10404 -19.83742 -17.94988 -17.29111 -17.01437 -16.39100 -16.21841 -15.60884 -15.05002 -14.95339 -14.67037 -14.38842 -13.91789 -13.69223 -13.43758 -13.19925 -12.82367 -12.35798 -12.18744 -12.08138 -11.90281 -11.46248 -11.18879 -11.12128 -11.01729 -10.95398 -10.59013 -9.98666 -9.71450 -9.39444 -9.16445 -9.04946 -8.93675 -8.53125 -8.33420 -5.97344 -4.01668 0.70989 0.86085 1.88476 2.86203 3.09964 3.11516 3.31959 3.39077 3.42244 3.53056 4.02186 4.28248 4.46674 4.57578 4.72945 4.89796 4.94499 4.99679 5.18625 5.36555 5.37854 5.48952 5.72491 5.77879 5.80066 5.92299 6.05835 6.18858 6.21342 6.50861 6.73820 6.85505 7.72706 7.75631 7.83935 8.05322 8.36595 8.66441 9.06777 9.62070 11.13610 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026764 B = 0.003430 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.945709 B = 8161.423661 C = 8849.846734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.515 3.485 12 O -0.530 6.530 13 N -0.729 5.729 14 C 0.165 3.835 15 H 0.119 0.881 16 C 0.040 3.960 17 O -0.296 6.296 18 C 0.132 3.868 19 C -0.140 4.140 20 C -0.067 4.067 21 C -0.145 4.145 22 C 0.024 3.976 23 Cl -0.051 7.051 24 C -0.186 4.186 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.401 0.599 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -23.547 -1.538 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.304 3.696 12 O -0.405 6.405 13 N -0.383 5.383 14 C 0.059 3.941 15 H 0.136 0.864 16 C -0.036 4.036 17 O -0.209 6.209 18 C 0.085 3.915 19 C -0.158 4.158 20 C -0.086 4.086 21 C -0.164 4.164 22 C -0.003 4.003 23 Cl -0.022 7.022 24 C -0.188 4.188 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.236 0.764 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.952 -23.401 -1.466 24.759 hybrid contribution 0.913 1.162 -0.171 1.488 sum 8.865 -22.239 -1.637 23.997 Atomic orbital electron populations 1.70009 1.06044 1.26483 1.50265 1.25025 0.94829 0.99245 0.95300 0.86536 0.80016 0.83832 0.77590 1.19743 1.21016 1.21015 1.21249 0.92971 0.90969 1.51290 0.92546 1.18908 0.93143 0.89343 0.98650 1.21879 1.00771 0.91561 1.02658 1.21669 0.88690 0.85471 0.73796 1.90678 1.14371 1.87419 1.48009 1.46135 1.10064 1.04223 1.77903 1.20875 0.96254 0.82494 0.94466 0.86356 1.24454 1.04914 0.76859 0.97374 1.86889 1.61612 1.25500 1.46929 1.19417 0.90519 0.94341 0.87205 1.20365 0.98936 0.96852 0.99697 1.20861 0.96791 0.98246 0.92672 1.21004 1.02131 0.91512 1.01771 1.20191 0.98277 0.90144 0.91668 1.98429 1.96928 1.41743 1.65121 1.20667 1.03353 0.97951 0.96811 0.93000 0.95796 0.95777 0.90102 0.90090 0.76433 0.89565 0.86342 0.84656 0.84080 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.57 5.64 -27.88 -0.16 -2.73 16 11 C 0.51 9.54 7.83 -10.99 -0.09 9.46 16 12 O -0.53 -11.97 15.62 5.55 0.09 -11.89 16 13 N -0.73 -10.12 4.44 -53.60 -0.24 -10.36 16 14 C 0.17 2.15 3.36 -67.72 -0.23 1.92 16 15 H 0.12 1.76 7.54 -51.93 -0.39 1.37 16 16 C 0.04 0.46 7.73 38.06 0.29 0.76 16 17 O -0.30 -3.50 11.10 -20.16 -0.22 -3.73 16 18 C 0.13 1.45 7.04 -38.96 -0.27 1.17 16 19 C -0.14 -1.18 10.06 -39.30 -0.40 -1.58 16 20 C -0.07 -0.47 10.01 -39.68 -0.40 -0.87 16 21 C -0.15 -1.22 9.85 -39.49 -0.39 -1.61 16 22 C 0.02 0.26 6.31 -39.63 -0.25 0.01 16 23 Cl -0.05 -0.61 28.14 -51.86 -1.46 -2.07 16 24 C -0.19 -2.16 5.71 -104.07 -0.59 -2.75 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.40 4.74 8.65 -40.82 -0.35 4.38 16 31 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -33.48 320.96 -8.37 -41.85 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.08 Total: 0.28 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.01 Total: -8.95 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.50 Total: -36.96 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.14 Total: -15.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.46 Total: -2.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.48 -8.37 -41.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360623402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.126 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds