Wall clock time and date at job start Tue Mar 31 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48493 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46867 * 299.99773 * 3 2 1 6 6 H 1.48496 * 109.47241 * 59.99523 * 3 2 1 7 7 C 1.37871 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47004 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47204 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99878 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00337 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00346 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.83232 * 31.27843 * 14 13 11 16 16 C 1.54717 * 110.97452 * 267.53995 * 14 13 11 17 17 O 1.43768 * 102.78736 * 216.48374 * 16 14 13 18 18 C 1.36132 * 109.28515 * 27.57364 * 17 16 14 19 19 C 1.39294 * 129.87040 * 161.64218 * 18 17 16 20 20 C 1.37940 * 120.26826 * 179.61584 * 19 18 17 21 21 C 1.38259 * 120.36813 * 359.82274 * 20 19 18 22 22 C 1.38471 * 119.75176 * 0.21876 * 21 20 19 23 23 Cl 1.73601 * 120.03009 * 180.02562 * 22 21 20 24 24 C 1.37858 * 119.94989 * 359.97438 * 22 21 20 25 25 H 0.96996 * 119.99614 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47187 * 60.00019 * 9 7 2 27 27 H 1.08996 * 109.47126 * 300.00026 * 9 7 2 28 28 H 1.09007 * 109.47293 * 60.00222 * 10 9 7 29 29 H 1.08997 * 109.47391 * 300.00546 * 10 9 7 30 30 H 0.97002 * 119.99825 * 0.02562 * 13 11 10 31 31 H 1.09001 * 110.74694 * 334.80754 * 16 14 13 32 32 H 1.08992 * 110.74958 * 97.97454 * 16 14 13 33 33 H 1.07996 * 119.87049 * 359.42223 * 19 18 17 34 34 H 1.08000 * 119.81544 * 179.89034 * 20 19 18 35 35 H 1.08005 * 120.12710 * 180.22818 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1344 0.0008 14 6 1.4331 -7.4031 0.0008 15 1 0.4851 -7.3034 -0.5278 16 6 1.2104 -7.9139 1.4441 17 8 1.3445 -9.3383 1.3018 18 6 2.1622 -9.6098 0.2479 19 6 2.8522 -10.7775 -0.0693 20 6 3.6299 -10.8384 -1.2070 21 6 3.7294 -9.7432 -2.0450 22 6 3.0477 -8.5780 -1.7370 23 17 3.1670 -7.1988 -2.7845 24 6 2.2732 -8.5143 -0.5983 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 3.1356 -6.1344 0.0004 31 1 1.9732 -7.5194 2.1154 32 1 0.2136 -7.6505 1.7975 33 1 2.7805 -11.6378 0.5797 34 1 4.1631 -11.7469 -1.4450 35 1 4.3365 -9.7964 -2.9367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360623402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:40 Heat of formation + Delta-G solvation = -78.143243 kcal Electronic energy + Delta-G solvation = -20722.231685 eV Core-core repulsion = 17324.274103 eV Total energy + Delta-G solvation = -3397.957582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.48500 -40.51525 -38.76999 -37.34229 -36.06700 -35.53751 -33.20614 -32.09622 -31.08520 -29.88092 -27.65222 -24.83504 -23.91537 -23.38741 -22.37405 -21.35866 -19.02503 -18.62481 -18.17358 -17.74855 -17.19595 -16.91408 -16.50291 -16.38346 -15.94045 -15.61786 -14.89005 -14.67460 -14.52582 -14.44638 -14.16360 -14.10543 -13.47809 -13.24512 -13.01581 -12.85457 -12.79925 -12.45944 -12.24653 -11.99229 -11.94660 -11.82345 -11.65325 -11.29678 -10.89075 -10.58620 -10.35183 -9.85062 -9.33639 -8.18565 -6.32254 -0.02821 0.13679 1.06759 1.41911 1.43040 1.56344 1.61376 1.93022 2.19166 2.42672 2.58864 3.13369 3.14697 3.34276 3.78271 3.94786 4.01263 4.12773 4.25989 4.36407 4.38378 4.45104 4.53257 4.56485 4.66436 5.04321 5.06870 5.13253 5.26144 5.28362 5.42968 5.50160 5.62644 5.84947 5.95223 6.17193 6.45743 6.86022 7.22542 7.37951 8.94198 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026764 B = 0.003430 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.945709 B = 8161.423661 C = 8849.846734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.119 4.119 11 C 0.521 3.479 12 O -0.580 6.580 13 N -0.704 5.704 14 C 0.162 3.838 15 H 0.092 0.908 16 C 0.045 3.955 17 O -0.304 6.304 18 C 0.112 3.888 19 C -0.134 4.134 20 C -0.051 4.051 21 C -0.140 4.140 22 C 0.010 3.990 23 Cl -0.070 7.070 24 C -0.202 4.202 25 H 0.263 0.737 26 H -0.018 1.018 27 H -0.014 1.014 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.415 0.585 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.293 -25.263 -1.615 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.158 4.158 11 C 0.310 3.690 12 O -0.458 6.458 13 N -0.357 5.357 14 C 0.057 3.943 15 H 0.110 0.890 16 C -0.031 4.031 17 O -0.218 6.218 18 C 0.066 3.934 19 C -0.153 4.153 20 C -0.069 4.069 21 C -0.159 4.159 22 C -0.017 4.017 23 Cl -0.041 7.041 24 C -0.204 4.204 25 H 0.071 0.929 26 H 0.000 1.000 27 H 0.004 0.996 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.252 0.748 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.177 0.823 34 H 0.200 0.800 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.177 -25.169 -1.545 27.582 hybrid contribution -0.048 1.530 -0.181 1.542 sum 11.129 -23.638 -1.725 26.184 Atomic orbital electron populations 1.70182 1.08247 1.27713 1.51542 1.26119 0.95726 1.03882 0.94687 0.85287 0.79313 0.78189 0.77546 1.17657 1.20713 1.20574 1.21732 0.93971 0.91612 1.50635 0.90691 1.18686 0.93645 0.92284 0.94848 1.21640 0.99397 0.89923 1.04859 1.21329 0.87829 0.86342 0.73532 1.90668 1.16372 1.88106 1.50684 1.45766 1.10596 1.03501 1.75873 1.20857 0.95497 0.82283 0.95707 0.89026 1.24355 1.05210 0.77177 0.96333 1.86866 1.62333 1.25067 1.47515 1.19731 0.91433 0.95227 0.86984 1.20793 0.97774 0.96446 1.00277 1.21354 0.95448 0.99020 0.91103 1.21370 1.01236 0.90728 1.02537 1.20400 0.99336 0.90568 0.91397 1.98421 1.97051 1.43011 1.65633 1.20529 1.04412 0.97557 0.97880 0.92873 0.99977 0.99562 0.87460 0.88122 0.74797 0.88398 0.86619 0.82320 0.79957 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 2 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 4 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 8 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.39 4.26 29.85 0.13 2.52 16 10 C -0.12 -4.75 5.64 29.85 0.17 -4.58 16 11 C 0.52 19.88 7.83 87.66 0.69 20.56 16 12 O -0.58 -27.80 15.62 -3.04 -0.05 -27.84 16 13 N -0.70 -19.60 4.44 -441.88 -1.96 -21.57 16 14 C 0.16 4.32 3.36 45.13 0.15 4.47 16 15 H 0.09 2.93 7.54 -2.39 -0.02 2.91 16 16 C 0.05 1.05 7.73 72.57 0.56 1.61 16 17 O -0.30 -6.99 11.10 -95.05 -1.06 -8.05 16 18 C 0.11 2.29 7.04 22.67 0.16 2.45 16 19 C -0.13 -1.81 10.06 22.45 0.23 -1.59 16 20 C -0.05 -0.50 10.01 22.20 0.22 -0.28 16 21 C -0.14 -1.89 9.85 22.33 0.22 -1.67 16 22 C 0.01 0.20 6.31 22.24 0.14 0.34 16 23 Cl -0.07 -1.62 28.14 -2.72 -0.08 -1.70 16 24 C -0.20 -4.53 5.71 -19.50 -0.11 -4.64 16 25 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 26 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 27 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 28 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 29 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.41 9.37 8.65 -92.71 -0.80 8.57 16 31 H 0.10 2.01 8.09 -2.39 -0.02 1.99 16 32 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -76.50 320.96 2.74 -73.77 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.32 Total: 9.48 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.25 Total: -11.35 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.68 Total: -80.79 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.10 Total: -35.89 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -76.50 2.74 -73.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360623402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.375 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds