Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.83429 * 297.73618 * 14 12 11 16 16 C 1.54705 * 110.94227 * 61.45353 * 14 12 11 17 17 O 1.43770 * 102.79233 * 92.78500 * 16 14 12 18 18 C 1.36153 * 109.28497 * 27.55369 * 17 16 14 19 19 C 1.39284 * 129.86188 * 161.45707 * 18 17 16 20 20 C 1.37927 * 120.25687 * 179.60053 * 19 18 17 21 21 C 1.38386 * 120.34468 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.13581 * 180.15830 * 21 20 19 23 23 C 1.38453 * 119.73324 * 0.18309 * 21 20 19 24 24 C 1.37742 * 119.96660 * 359.97438 * 23 21 20 25 25 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 31 31 H 1.09004 * 110.74665 * 211.10768 * 16 14 12 32 32 H 1.08997 * 110.75116 * 334.45592 * 16 14 12 33 33 H 1.08000 * 119.87119 * 359.55941 * 19 18 17 34 34 H 1.08005 * 119.82978 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01468 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0022 12 6 6.1603 -3.8038 -0.0028 13 8 5.5539 -4.8541 -0.0019 14 6 7.6673 -3.8039 -0.0034 15 1 8.0546 -3.3295 -0.9052 16 6 8.2208 -3.1138 1.2657 17 8 8.3986 -4.2138 2.1743 18 6 8.6226 -5.3529 1.4629 19 6 9.1784 -6.5639 1.8686 20 6 9.3066 -7.6045 0.9724 21 6 8.8842 -7.4556 -0.3369 22 17 9.0444 -8.7703 -1.4593 23 6 8.3338 -6.2537 -0.7484 24 6 8.2082 -5.2128 0.1449 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6584 -3.1503 0.8892 29 1 3.6578 -3.1506 -0.8907 30 1 5.9715 -1.7966 -0.0025 31 1 9.1739 -2.6279 1.0566 32 1 7.5002 -2.3984 1.6618 33 1 9.5108 -6.6884 2.8886 34 1 9.7389 -8.5405 1.2943 35 1 8.0022 -6.1327 -1.7691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362634996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = -52.330366 kcal Electronic energy + Delta-G solvation = -20548.892826 eV Core-core repulsion = 17152.054575 eV Total energy + Delta-G solvation = -3396.838252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73573 -39.05334 -37.98644 -36.36609 -35.11754 -33.26613 -32.75851 -30.60392 -30.07674 -29.34916 -25.38690 -24.14900 -22.84190 -22.29890 -20.89390 -20.20572 -17.93742 -17.33997 -17.03810 -16.91100 -16.41636 -15.86144 -15.19264 -14.90550 -14.36121 -14.24056 -14.16022 -13.63612 -13.45343 -13.42624 -13.11555 -12.65004 -12.59248 -12.18843 -11.96457 -11.57932 -11.55377 -11.25042 -11.04832 -10.89763 -10.46439 -10.33748 -10.02443 -9.71259 -9.38951 -9.22713 -8.72728 -8.63017 -8.33876 -6.15234 -4.15919 0.84999 0.96951 1.90818 2.62835 2.97517 3.13319 3.21164 3.28327 3.29986 3.55610 3.88952 4.20881 4.33184 4.46756 4.66379 4.76767 4.85793 5.03721 5.07325 5.17388 5.21341 5.28360 5.57528 5.68651 5.92302 6.01199 6.03008 6.11000 6.12506 6.47977 6.60501 6.76787 7.04942 7.15716 7.60842 7.72869 8.35417 8.42115 8.88983 9.44369 10.97831 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.003040 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.420766 B = 9206.812695 C = 9788.603655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.130 3.870 11 N -0.724 5.724 12 C 0.515 3.485 13 O -0.527 6.527 14 C -0.104 4.104 15 H 0.127 0.873 16 C 0.061 3.939 17 O -0.295 6.295 18 C 0.120 3.880 19 C -0.130 4.130 20 C -0.071 4.071 21 C -0.066 4.066 22 Cl -0.068 7.068 23 C -0.040 4.040 24 C -0.136 4.136 25 H 0.265 0.735 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.017 -9.754 0.495 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.008 3.992 11 N -0.374 5.374 12 C 0.299 3.701 13 O -0.403 6.403 14 C -0.126 4.126 15 H 0.145 0.855 16 C -0.014 4.014 17 O -0.208 6.208 18 C 0.074 3.926 19 C -0.148 4.148 20 C -0.090 4.090 21 C -0.093 4.093 22 Cl -0.040 7.040 23 C -0.058 4.058 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 23.367 -10.464 0.639 25.611 hybrid contribution 0.404 1.369 -0.351 1.470 sum 23.771 -9.095 0.288 25.453 Atomic orbital electron populations 1.69902 1.06312 1.27110 1.50229 1.25007 0.94773 0.99167 0.94331 0.86744 0.80239 0.83534 0.78492 1.20212 1.21235 1.19093 1.20907 0.88597 0.94934 1.51854 0.90617 1.19793 0.98092 0.91172 0.96842 1.21558 0.75509 1.00313 1.01807 1.46303 1.09374 1.07497 1.74260 1.19975 0.88165 0.84596 0.77384 1.90733 1.69598 1.31233 1.48761 1.21645 0.94783 0.94153 1.01971 0.85548 1.23922 1.02218 0.88689 0.86564 1.86875 1.86454 1.15143 1.32367 1.19619 0.94301 0.88797 0.89863 1.20131 1.03217 0.90453 1.01039 1.20737 0.98531 0.98895 0.90830 1.20573 1.06870 0.90202 0.91634 1.98364 1.96697 1.47268 1.61629 1.20083 0.95858 0.89810 1.00088 1.20039 1.03245 0.95823 0.94626 0.92491 0.95969 0.96396 0.91788 0.91812 0.77087 0.88920 0.86700 0.84337 0.84045 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -5.79 6.54 56.52 0.37 -5.43 16 7 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.47 4.16 -27.88 -0.12 -0.58 16 10 C 0.13 2.56 5.61 -4.04 -0.02 2.53 16 11 N -0.72 -10.98 5.29 -60.29 -0.32 -11.30 16 12 C 0.51 7.96 7.15 -10.98 -0.08 7.89 16 13 O -0.53 -10.55 16.15 5.56 0.09 -10.46 16 14 C -0.10 -1.14 3.52 -91.56 -0.32 -1.46 16 15 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.06 0.56 7.53 38.05 0.29 0.85 16 17 O -0.30 -3.63 11.10 -20.23 -0.22 -3.86 16 18 C 0.12 1.47 7.04 -38.96 -0.27 1.19 16 19 C -0.13 -1.33 10.06 -39.31 -0.40 -1.73 16 20 C -0.07 -0.68 9.81 -39.64 -0.39 -1.07 16 21 C -0.07 -0.72 6.33 -39.45 -0.25 -0.97 16 22 Cl -0.07 -0.69 28.97 -51.86 -1.50 -2.19 16 23 C -0.04 -0.47 9.82 -39.68 -0.39 -0.86 16 24 C -0.14 -1.67 4.93 -104.10 -0.51 -2.19 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.40 4.67 8.30 -40.82 -0.34 4.33 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 0.98 7.53 -51.93 -0.39 0.58 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -33.52 318.42 -7.99 -41.51 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.04 Total: 1.20 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.89 Total: -9.32 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.45 Total: -37.58 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.13 Total: -14.32 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.52 -7.99 -41.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362634996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.825 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds