Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.83429 * 297.73618 * 14 12 11 16 16 C 1.54705 * 110.94227 * 61.45353 * 14 12 11 17 17 O 1.43770 * 102.79233 * 92.78500 * 16 14 12 18 18 C 1.36153 * 109.28497 * 27.55369 * 17 16 14 19 19 C 1.39284 * 129.86188 * 161.45707 * 18 17 16 20 20 C 1.37927 * 120.25687 * 179.60053 * 19 18 17 21 21 C 1.38386 * 120.34468 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.13581 * 180.15830 * 21 20 19 23 23 C 1.38453 * 119.73324 * 0.18309 * 21 20 19 24 24 C 1.37742 * 119.96660 * 359.97438 * 23 21 20 25 25 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 31 31 H 1.09004 * 110.74665 * 211.10768 * 16 14 12 32 32 H 1.08997 * 110.75116 * 334.45592 * 16 14 12 33 33 H 1.08000 * 119.87119 * 359.55941 * 19 18 17 34 34 H 1.08005 * 119.82978 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01468 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0022 12 6 6.1603 -3.8038 -0.0028 13 8 5.5539 -4.8541 -0.0019 14 6 7.6673 -3.8039 -0.0034 15 1 8.0546 -3.3295 -0.9052 16 6 8.2208 -3.1138 1.2657 17 8 8.3986 -4.2138 2.1743 18 6 8.6226 -5.3529 1.4629 19 6 9.1784 -6.5639 1.8686 20 6 9.3066 -7.6045 0.9724 21 6 8.8842 -7.4556 -0.3369 22 17 9.0444 -8.7703 -1.4593 23 6 8.3338 -6.2537 -0.7484 24 6 8.2082 -5.2128 0.1449 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6584 -3.1503 0.8892 29 1 3.6578 -3.1506 -0.8907 30 1 5.9715 -1.7966 -0.0025 31 1 9.1739 -2.6279 1.0566 32 1 7.5002 -2.3984 1.6618 33 1 9.5108 -6.6884 2.8886 34 1 9.7389 -8.5405 1.2943 35 1 8.0022 -6.1327 -1.7691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362634996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = -75.519919 kcal Electronic energy + Delta-G solvation = -20549.898401 eV Core-core repulsion = 17152.054575 eV Total energy + Delta-G solvation = -3397.843826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.59827 -40.29033 -38.79414 -37.16656 -36.68991 -34.85855 -34.03715 -32.12353 -30.98417 -30.32719 -27.03167 -25.12476 -23.80928 -23.20577 -22.59158 -21.39886 -19.06231 -18.87297 -18.12723 -17.89598 -17.33848 -16.88566 -16.50328 -16.22018 -16.21387 -15.22952 -15.08927 -14.81746 -14.77088 -14.50256 -14.39620 -13.98039 -13.39862 -13.36056 -13.10554 -12.92351 -12.73579 -12.39025 -12.21539 -12.16355 -11.86503 -11.75636 -11.68744 -11.51911 -10.95747 -10.79195 -10.12608 -10.08192 -9.16588 -8.30310 -6.38287 0.03033 0.14836 1.10328 1.39686 1.42938 1.48379 1.53982 2.07379 2.18779 2.37210 2.57788 3.05003 3.05064 3.43295 3.68934 3.77048 4.00835 4.14229 4.26569 4.34987 4.37961 4.40625 4.49150 4.58341 4.73015 4.81308 4.88741 5.11153 5.13955 5.20172 5.34745 5.38781 5.40072 5.62424 5.97607 6.21147 6.53073 6.70226 7.19833 7.26557 8.86733 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.003040 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.420766 B = 9206.812695 C = 9788.603655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.232 1.232 7 C -0.542 4.542 8 H 0.025 0.975 9 C -0.011 4.011 10 C 0.145 3.855 11 N -0.710 5.710 12 C 0.513 3.487 13 O -0.580 6.580 14 C -0.094 4.094 15 H 0.164 0.836 16 C 0.061 3.939 17 O -0.314 6.314 18 C 0.103 3.897 19 C -0.133 4.133 20 C -0.067 4.067 21 C -0.076 4.076 22 Cl -0.065 7.065 23 C -0.054 4.054 24 C -0.156 4.156 25 H 0.268 0.732 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.417 0.583 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.478 -8.173 0.753 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.154 1.154 7 C -0.580 4.580 8 H 0.044 0.956 9 C -0.049 4.049 10 C 0.021 3.979 11 N -0.362 5.362 12 C 0.299 3.701 13 O -0.459 6.459 14 C -0.115 4.115 15 H 0.181 0.819 16 C -0.014 4.014 17 O -0.228 6.228 18 C 0.057 3.943 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.103 4.103 22 Cl -0.036 7.036 23 C -0.073 4.073 24 C -0.157 4.157 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.254 0.746 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 26.880 -8.873 0.896 28.321 hybrid contribution -0.740 0.732 -0.432 1.126 sum 26.141 -8.141 0.464 27.383 Atomic orbital electron populations 1.70086 1.08746 1.28484 1.51955 1.26137 0.95702 1.04067 0.93595 0.85507 0.79788 0.76996 0.79380 1.18924 1.21497 1.15436 1.21274 0.91789 0.93264 1.51685 0.95649 1.19647 0.94236 0.92695 0.98338 1.21028 0.78451 0.98590 0.99801 1.45986 1.07324 1.08879 1.74040 1.20825 0.90228 0.83459 0.75540 1.90713 1.71202 1.33095 1.50921 1.21683 0.90622 0.94437 1.04773 0.81852 1.24238 1.04381 0.87881 0.84886 1.86837 1.86631 1.15839 1.33535 1.19919 0.94962 0.89439 0.89948 1.20484 1.02565 0.89911 1.02172 1.21063 0.97579 0.99742 0.90122 1.20753 1.07056 0.90149 0.92355 1.98362 1.96677 1.46961 1.61624 1.20231 0.96377 0.90361 1.00334 1.20238 1.03946 0.96579 0.94957 0.92336 0.94171 0.94258 0.94151 0.93897 0.74568 0.84859 0.86006 0.82226 0.81463 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 2 C 0.00 0.11 5.47 84.65 0.46 0.57 16 3 Si 0.96 41.14 27.47 68.60 1.88 43.03 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.23 -8.57 6.54 99.48 0.65 -7.92 16 7 C -0.54 -30.56 9.66 25.60 0.25 -30.31 16 8 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.36 16 10 C 0.15 5.73 5.61 86.38 0.48 6.22 16 11 N -0.71 -20.26 5.29 -463.05 -2.45 -22.71 16 12 C 0.51 15.30 7.15 87.66 0.63 15.92 16 13 O -0.58 -23.59 16.15 -3.02 -0.05 -23.64 16 14 C -0.09 -1.83 3.52 -11.40 -0.04 -1.87 16 15 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 16 C 0.06 0.91 7.53 72.56 0.55 1.45 16 17 O -0.31 -7.07 11.10 -95.30 -1.06 -8.13 16 18 C 0.10 2.36 7.04 22.67 0.16 2.52 16 19 C -0.13 -2.49 10.06 22.45 0.23 -2.26 16 20 C -0.07 -1.16 9.81 22.23 0.22 -0.95 16 21 C -0.08 -1.59 6.33 22.36 0.14 -1.45 16 22 Cl -0.07 -1.25 28.97 -2.72 -0.08 -1.33 16 23 C -0.05 -1.25 9.82 22.20 0.22 -1.03 16 24 C -0.16 -3.62 4.93 -19.53 -0.10 -3.71 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 27 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.42 8.32 8.30 -92.71 -0.77 7.55 16 31 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 1.63 7.53 -2.39 -0.02 1.61 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -76.90 318.42 2.17 -74.73 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.30 Total: 12.20 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 3.32 Total: -15.25 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.15 Total: -81.60 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.11 Total: -31.77 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.03 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -76.90 2.17 -74.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362634996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.792 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds